prot_M-pyrifera_M_contig116423.3416.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig116423.3416.1
Unique Nameprot_M-pyrifera_M_contig116423.3416.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length83
Homology
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BLAST of mRNA_M-pyrifera_M_contig116423.3416.1 vs. uniprot
Match: A0A0G4F874_VITBC (TLC domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F874_VITBC)

HSP 1 Score: 55.8 bits (133), Expect = 1.640e-7
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0 
Query:    1 PSGSKLLHDYGNLVIMALMLIMCVDGLIQWPTTMWQPVCLLVYFVVDSAWI-FLDPSIVRSPTQILIHHAAASGLVLAALPSE 82
            P+  + LH+  NLVI+  +LI+    L++W +  +  + +L+YFV+D+AWI  +   +V+ P  I++HH AA  LV  ++  E
Sbjct:   12 PTIWRTLHNRFNLVILPTILILAARDLLRWESDYYTQLFVLLYFVIDTAWIGLMGYRVVKDPQSIMVHHLAAIVLVAGSMLKE 94
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BLAST of mRNA_M-pyrifera_M_contig116423.3416.1 vs. uniprot
Match: A0A5A8C5Y6_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5Y6_CAFRO)

HSP 1 Score: 49.7 bits (117), Expect = 5.100e-5
Identity = 21/68 (30.88%), Postives = 37/68 (54.41%), Query Frame = 0 
Query:    1 PSGSKLLHDYGNLVIMALMLIMCVDGLIQWPTTMWQPVCLLVYFVVDSAWIFLDPSIVRSPTQILIHH 68
            P  +  LHD  N+ +  +M  +C+  +      +W  +  + YF +D  W+  DPSIV+ P +I++HH
Sbjct:  145 PGSTADLHDMMNMALFLIMGPLCIYSIFTGVMEVWPSLLGVTYFSLDMLWLVWDPSIVKQPGEIMMHH 212
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116423.3416.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4F874_VITBC1.640e-734.94TLC domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A5A8C5Y6_CAFRO5.100e-530.88Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 54..83
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..28
NoneNo IPR availableTMHMMTMhelixcoord: 13..30
NoneNo IPR availableTMHMMTMhelixcoord: 34..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116423contigM-pyrifera_M_contig116423:1..249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116423.3416.1mRNA_M-pyrifera_M_contig116423.3416.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig116423 1..249 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig116423.3416.1 ID=prot_M-pyrifera_M_contig116423.3416.1|Name=mRNA_M-pyrifera_M_contig116423.3416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
PSGSKLLHDYGNLVIMALMLIMCVDGLIQWPTTMWQPVCLLVYFVVDSAW
IFLDPSIVRSPTQILIHHAAASGLVLAALPSEA
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