mRNA_M-pyrifera_M_contig115874.3297.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115874.3297.1
Unique NamemRNA_M-pyrifera_M_contig115874.3297.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A3A9JBK8_9PROT (DNA-binding protein n=1 Tax=Roseomonas wenyumeiae TaxID=2478470 RepID=A0A3A9JBK8_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 9.490e-10
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   13 PTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRRG 186
            P+      T+   +A LAVS +++RRWI +++L  HRLGR +RIAE DL+AF  R+RG
Sbjct:    5 PSRSAPLLTLAAAAARLAVSTKTLRRWIAAEQLRVHRLGRQIRIAEEDLQAFLARQRG 62          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A7Z9KFP6_9PROT (DNA-binding protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Z9KFP6_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 8.960e-9
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = 1
Query:   37 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF-RKRRRG 186
            T+KQ +  L VS++++RRWI + +L+AHRLGR  RI+E+DL+ F R RR+G
Sbjct:   18 TIKQAAEHLQVSSKTLRRWIDTGDLIAHRLGRQWRISETDLQTFIRMRRQG 68          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI0018DF5014 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas sp. KE0001 TaxID=2479201 RepID=UPI0018DF5014)

HSP 1 Score: 53.1 bits (126), Expect = 6.370e-8
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   37 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 183
            T+ +++A LAVS +++RRWI  ++L  HRLGR +R+AE DL+ F   RR
Sbjct:   13 TLVEVAARLAVSTKTLRRWIALEQLRIHRLGRQIRVAEEDLQTFLASRR 61          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A1G7FYI4_9RHOB (DNA binding domain-containing protein, excisionase family n=1 Tax=Ruegeria marina TaxID=639004 RepID=A0A1G7FYI4_9RHOB)

HSP 1 Score: 51.6 bits (122), Expect = 3.120e-7
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    7 PMPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEA 165
            P P N  TF +VK+++A   V  ++VRRWIQS EL A RLGR  RIA ++L+A
Sbjct:    5 PFPAN-ATFLSVKEVAALFRVCPKTVRRWIQSGELPATRLGRDWRIARNNLKA 56          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI001A95AB19 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas haemaphysalidis TaxID=2768162 RepID=UPI001A95AB19)

HSP 1 Score: 50.1 bits (118), Expect = 9.590e-7
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   37 TVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 168
            TV Q++  LA+S ++VRRWI    L AH++GR +RI+E DL+ F
Sbjct:    9 TVDQVAEHLAISTKTVRRWIADGRLNAHQIGRQLRISERDLQVF 52          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A0M5IIH1_SPHS1 (DNA binding domain protein, excisionase family n=1 Tax=Sphingopyxis sp. (strain 113P3) TaxID=292913 RepID=A0A0M5IIH1_SPHS1)

HSP 1 Score: 50.4 bits (119), Expect = 1.150e-6
Identity = 22/58 (37.93%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    4 SPMPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKR 177
            +P+P+  + F+TV +++   ++S R +RR I + ELVAHR+GR+VR++ +++  F  R
Sbjct:   19 APLPSGRKAFYTVAELAVRWSLSERHIRRLIDNGELVAHRIGRAVRVSAANVALFEAR 76          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A4S4A967_9HYPH (Helix-turn-helix domain-containing protein n=2 Tax=Mesorhizobium composti TaxID=2675109 RepID=A0A4S4A967_9HYPH)

HSP 1 Score: 50.4 bits (119), Expect = 1.530e-6
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   25 ETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 183
            E FFT+KQ++    VS R V R++ S  LVAH+ GRS+RIAE ++  F  R R
Sbjct:   42 EQFFTIKQLAKRWQVSERQVHRFVHSGVLVAHKFGRSLRIAEDNVLLFELRSR 94          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: UPI001C49D900 (helix-turn-helix domain-containing protein n=1 Tax=Sinirhodobacter sp. B57 TaxID=2851012 RepID=UPI001C49D900)

HSP 1 Score: 47.0 bits (110), Expect = 1.810e-5
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:   16 TNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 168
            T PE   T+ + +  L VS +S+RRWI+S EL A +LG   RI   DL+ F
Sbjct:    7 TTPEQLLTIPEAAELLRVSIKSIRRWIESGELSAAKLGNQWRIRPQDLDRF 57          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: E3I1L0_RHOVT (DNA binding domain protein, excisionase family n=4 Tax=Rhodomicrobium TaxID=1068 RepID=E3I1L0_RHOVT)

HSP 1 Score: 47.0 bits (110), Expect = 1.930e-5
Identity = 24/51 (47.06%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   31 FFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAFRKRRR 183
            FFTV +++A   +SAR VRR I+S  L AHR G+S+RIA   +  +   RR
Sbjct:   16 FFTVNELAARWGMSARHVRREIESGALQAHRFGKSIRIAAESVAIYEATRR 66          
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Match: A0A7V9N1E8_9CHLR (Helix-turn-helix domain-containing protein n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7V9N1E8_9CHLR)

HSP 1 Score: 47.4 bits (111), Expect = 9.770e-5
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1
Query:   34 FTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDLEAF 168
            FTVK+ +  L VS  +VRR+I S EL AHR+GR +R+   D+E F
Sbjct:   10 FTVKETAQMLRVSPITVRRYIASGELSAHRVGRGIRVKRQDVEDF 54          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115874.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A3A9JBK8_9PROT9.490e-1048.28DNA-binding protein n=1 Tax=Roseomonas wenyumeiae ... [more]
A0A7Z9KFP6_9PROT8.960e-952.94DNA-binding protein n=1 Tax=Alphaproteobacteria ba... [more]
UPI0018DF50146.370e-848.98helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A1G7FYI4_9RHOB3.120e-752.83DNA binding domain-containing protein, excisionase... [more]
UPI001A95AB199.590e-750.00helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A0M5IIH1_SPHS11.150e-637.93DNA binding domain protein, excisionase family n=1... [more]
A0A4S4A967_9HYPH1.530e-649.06Helix-turn-helix domain-containing protein n=2 Tax... [more]
UPI001C49D9001.810e-545.10helix-turn-helix domain-containing protein n=1 Tax... [more]
E3I1L0_RHOVT1.930e-547.06DNA binding domain protein, excisionase family n=4... [more]
A0A7V9N1E8_9CHLR9.770e-551.11Helix-turn-helix domain-containing protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115874contigM-pyrifera_M_contig115874:10..198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size180
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.3744428-UTR-M-pyrifera_M_contig115874:9..181622815675.3744428-UTR-M-pyrifera_M_contig115874:9..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115874 10..18 +
1692277516.3450322-UTR-M-pyrifera_M_contig115874:9..181692277516.3450322-UTR-M-pyrifera_M_contig115874:9..18Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115874 10..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.3832455-CDS-M-pyrifera_M_contig115874:18..1981622815675.3832455-CDS-M-pyrifera_M_contig115874:18..198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115874 19..198 +
1692277516.3566463-CDS-M-pyrifera_M_contig115874:18..1981692277516.3566463-CDS-M-pyrifera_M_contig115874:18..198Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115874 19..198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115874.3297.1prot_M-pyrifera_M_contig115874.3297.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115874 19..198 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115874.3297.1

>prot_M-pyrifera_M_contig115874.3297.1 ID=prot_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MPTNPETFFTVKQISAALAVSARSVRRWIQSKELVAHRLGRSVRIAESDL
EAFRKRRRG*
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mRNA from alignment at M-pyrifera_M_contig115874:10..198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115874.3297.1 ID=mRNA_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig115874:10..198+ (Macrocystis pyrifera P11B4 male)
AGCAGTCCCATGCCGACCAACCCCGAGACTTTCTTCACCGTCAAACAGAT CAGCGCCGCGCTCGCCGTCTCGGCCCGTAGCGTCCGTCGCTGGATCCAGA GCAAGGAGCTGGTGGCACACCGCCTGGGCCGGTCCGTTCGCATCGCGGAA AGCGACCTTGAAGCCTTCCGCAAGAGGCGTCGGGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115874:10..198+

>mRNA_M-pyrifera_M_contig115874.3297.1 ID=mRNA_M-pyrifera_M_contig115874.3297.1|Name=mRNA_M-pyrifera_M_contig115874.3297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig115874:10..198+ (Macrocystis pyrifera P11B4 male)
ATGCCGACCAACCCCGAGACTTTCTTCACCGTCAAACAGATCAGCGCCGC
GCTCGCCGTCTCGGCCCGTAGCGTCCGTCGCTGGATCCAGAGCAAGGAGC
TGGTGGCACACCGCCTGGGCCGGTCCGTTCGCATCGCGGAAAGCGACCTT
GAAGCCTTCCGCAAGAGGCGTCGGGGATGAATGCCGACCAACCCCGAGAC
TTTCTTCACCGTCAAACAGATCAGCGCCGCGCTCGCCGTCTCGGCCCGTA
GCGTCCGTCGCTGGATCCAGAGCAAGGAGCTGGTGGCACACCGCCTGGGC
CGGTCCGTTCGCATCGCGGAAAGCGACCTTGAAGCCTTCCGCAAGAGGCG
TCGGGGATGA
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