mRNA_M-pyrifera_M_contig115827.3282.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115827.3282.1
Unique NamemRNA_M-pyrifera_M_contig115827.3282.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: UPI001458C44C (LOW QUALITY PROTEIN: adenosine 3'-phospho 5'-phosphosulfate transporter 2-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458C44C)

HSP 1 Score: 107 bits (267), Expect = 3.610e-25
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 FRMDGF-DFGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            FR++GF  FGW+LT VQF  YT+F  VE   K++    RR PLR Y ++  L V +MG +N +  Y+ +PT V+FK  KLIPVM+GGV I  + YS +++ + +C+  GL++ TL
Sbjct:  100 FRLEGFRPFGWYLTLVQFAFYTMFGVVELQFKED--KTRRIPLRXYAILAFLTVATMGLSNTSVGYLNYPTQVIFKCCKLIPVMLGGVIIQRKRYSCIDVAAVLCMCVGLILFTL 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: A0A210Q078_MIZYE (Adenosine 3'-phospho 5'-phosphosulfate transporter 2 n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q078_MIZYE)

HSP 1 Score: 106 bits (265), Expect = 4.900e-25
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 FRMDGF-DFGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            FR++GF  FGW+LT VQF  YT+F  VE   K++    RR PL+ Y+++  L V +MG +N +  Y+ +PT V+FK  KLIPVM+GGV I  + YS +++ + +C+  GL++ TL
Sbjct:   75 FRLEGFRPFGWYLTLVQFAFYTIFGLVELQFKED--KTRRIPLKMYLILAFLTVATMGLSNTSVGYLNYPTQVIFKCCKLIPVMLGGVIIQRKHYSCIDVAAVLCMCLGLILFTL 187
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: A0A2C9LTE5_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9LTE5_BIOGL)

HSP 1 Score: 105 bits (263), Expect = 1.060e-24
Identity = 50/115 (43.48%), Postives = 78/115 (67.83%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F+++GF+ FGW+LT VQF  YT F   E  VK++    R+ P+R Y+L+  L V +MG +N +  Y+ +PT V+FK  KLIPV+IGG+ I  + +S ++I + +C+S GL++ TL
Sbjct:   84 FKLEGFEPFGWYLTLVQFAYYTFFGVAELQVKED--KQRKIPIRMYLLLAFLTVATMGLSNTSVGYLNYPTQVIFKCCKLIPVLIGGILIQGKKFSAIDITACLCMSIGLILFTL 196
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: A0A2S2PH30_SCHGA (Adenosine 3'-phospho 5'-phosphosulfate transporter 2 n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2PH30_SCHGA)

HSP 1 Score: 103 bits (256), Expect = 1.360e-24
Identity = 51/115 (44.35%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F + GF  FGW+LT VQF  Y++F  +E    +   + RR PL  Y+L+GL+L+ SMGF+N +  Y+ +PT V+FK  KLIPVMIGG+ +  + Y  ++I +A C+  GL++ TL
Sbjct:   63 FAIKGFKPFGWYLTLVQFFNYSIFGLIESQFNR---TQRRIPLVLYLLLGLILLGSMGFSNASLGYLNYPTQVIFKCCKLIPVMIGGILVQQKVYKVIDIVAASCMCAGLILFTL 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: A0A1D1VQR4_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1VQR4_RAMVA)

HSP 1 Score: 105 bits (263), Expect = 1.500e-24
Identity = 55/117 (47.01%), Postives = 83/117 (70.94%), Query Frame = 1 
Query:    1 FRMDGF-DFGWFLTWVQFLMYTVFAAVERAVKKEAMSD--RRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            FR++G+ DFGW+LT +QFL YT+F+ +ER   K  MSD  R+ P+R Y++IG L + ++G +NV+ +Y+ +PT V+FK  KLIPV++GGV I  + Y  L+I +A C+S GL+   L
Sbjct:  108 FRIEGYKDFGWYLTLMQFLQYTLFSFMER---KATMSDMTRKIPVRYYLVIGFLAMATIGLSNVSLAYLNYPTQVVFKCCKLIPVLVGGVLIQGKKYGMLDILAACCMSIGLIFFVL 221
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: A0A0P4WFY8_SCYOL (Uncharacterized protein n=3 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WFY8_SCYOL)

HSP 1 Score: 103 bits (258), Expect = 1.650e-24
Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F +DG   +GW+LT VQF  YT+FA ++  +  E +S R+ PLR Y +I  L V +MGF+N +  Y+ +PT V+FKS KLIPVMIG V I+ + YS  E+ + IC+S GL+  TL
Sbjct:  102 FTLDGMQPYGWYLTLVQFAYYTLFALIQLLLSGEGIS-RKIPLRTYAVIAFLTVGTMGFSNSSVGYLNYPTQVIFKSCKLIPVMIGSVLILGKRYSFAEVLACICMSVGLIWFTL 215
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: A0A6G0YQX7_APHCR (Adenosine 3'-phospho 5'-phosphosulfate transporter 2 n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0YQX7_APHCR)

HSP 1 Score: 105 bits (263), Expect = 4.020e-24
Identity = 51/115 (44.35%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F + GF  FGW+LT VQF  Y++F  +E    +   + RR PL  Y+L+GL+L+ SMGF+N +  Y+ +PT V+FK  KLIPVMIGG+ +  + Y  ++I +A+C+  GL++ TL
Sbjct:   63 FAIKGFKPFGWYLTLVQFFNYSIFGLIESQFNR---TQRRIPLVLYLLLGLILLGSMGFSNASLGYLNYPTQVIFKCCKLIPVMIGGILVQQKVYKAIDIVAALCMCAGLILFTL 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: UPI000D0C8028 (adenosine 3'-phospho 5'-phosphosulfate transporter 2 n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI000D0C8028)

HSP 1 Score: 103 bits (258), Expect = 4.190e-24
Identity = 51/115 (44.35%), Postives = 80/115 (69.57%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F +DGF  +GW+LT VQF++Y+ F+ +E  V K   ++RR PL+ YI + +L + +MGF+N + +Y+ +PT V+FK  KLIPVMIG + I H+ Y+ ++  +AIC+  GL + TL
Sbjct:   63 FTLDGFKPYGWYLTLVQFILYSTFSFIECTVTK---TERRIPLKAYIFLAMLTLGTMGFSNSSLAYLNYPTQVIFKCCKLIPVMIGSIVIQHKRYNIIDFSAAICMCIGLSLFTL 174
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: UPI0014550709 (adenosine 3'-phospho 5'-phosphosulfate transporter 2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014550709)

HSP 1 Score: 103 bits (256), Expect = 7.840e-24
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F+++GF  FGW+LT VQF  YTVF   E  +K     +R+ PLR Y L+  L V +MG +N A  Y+ +PT V+FK  KLIPVMIGGV I  + Y  ++  +A+C+S GL+   L
Sbjct:   59 FKLEGFKPFGWYLTLVQFACYTVFGMTE--MKLTGSQERKIPLRTYALLAFLTVATMGLSNSAVGYLNYPTQVIFKCCKLIPVMIGGVLIQGKQYGPIDASAALCMSIGLIFFIL 171
[Close]
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Match: J9JT16_ACYPI (Uncharacterized protein n=9 Tax=Aphidinae TaxID=133076 RepID=J9JT16_ACYPI)

HSP 1 Score: 103 bits (256), Expect = 8.050e-24
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 1 
Query:    1 FRMDGFD-FGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLLVCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSAICISGGLVVLTL 342
            F + GF  FGW+LT VQFL Y++F  +E        + RR PL  Y+L+GL+L+ SMGF+N +  Y+ +PT V+FK  KLIPVMIGG+ +  + Y  ++I +A C+  GL++ TL
Sbjct:   63 FAIKGFKPFGWYLTLVQFLNYSIFGLIESQFNH---TQRRIPLVLYLLLGLILLGSMGFSNASLGYLNYPTQVIFKCCKLIPVMIGGILVQQKVYKVVDIVAASCMCAGLILFTL 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115827.3282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001458C44C3.610e-2545.22LOW QUALITY PROTEIN: adenosine 3'-phospho 5'-phosp... [more]
A0A210Q078_MIZYE4.900e-2544.35Adenosine 3'-phospho 5'-phosphosulfate transporter... [more]
A0A2C9LTE5_BIOGL1.060e-2443.48Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A2S2PH30_SCHGA1.360e-2444.35Adenosine 3'-phospho 5'-phosphosulfate transporter... [more]
A0A1D1VQR4_RAMVA1.500e-2447.01Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A0P4WFY8_SCYOL1.650e-2447.83Uncharacterized protein n=3 Tax=Scylla olivacea Ta... [more]
A0A6G0YQX7_APHCR4.020e-2444.35Adenosine 3'-phospho 5'-phosphosulfate transporter... [more]
UPI000D0C80284.190e-2444.35adenosine 3'-phospho 5'-phosphosulfate transporter... [more]
UPI00145507097.840e-2446.09adenosine 3'-phospho 5'-phosphosulfate transporter... [more]
J9JT16_ACYPI8.050e-2445.22Uncharacterized protein n=9 Tax=Aphidinae TaxID=13... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115827contigM-pyrifera_M_contig115827:3..524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score99.8
Seed ortholog evalue9.5e-19
Seed eggNOG ortholog7029.ACYPI003468-PA
Preferred namePapst2
KEGG koko:K15277
KEGG TC2.A.7.11.5
Hectar predicted targeting categorysignal peptide
GOsGO:0000137,GO:0000139,GO:0000295,GO:0003674,GO:0005215,GO:0005346,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006029,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015012,GO:0015075,GO:0015215,GO:0015216,GO:0015605,GO:0015711,GO:0015748,GO:0015865,GO:0015868,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0019538,GO:0022857,GO:0030166,GO:0030173,GO:0030176,GO:0030201,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0031985,GO:0034220,GO:0034645,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046963,GO:0046964,GO:0051179,GO:0051234,GO:0051503,GO:0055085,GO:0071702,GO:0071704,GO:0071705,GO:0072348,GO:0072530,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576,GO:1901679,GO:1901682,GO:1902559
EggNOG free text desc.UAA transporter family
EggNOG OGs38CNR@33154,3BA71@33208,3CY50@33213,3E865@33342,3SIGC@50557,41WSY@6656,COG0697@1,KOG1582@2759
COG Functional cat.P
Best tax levelParaneoptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons2
Model size366
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115827.3282.1prot_M-pyrifera_M_contig115827.3282.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115827 9..524 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.777927-UTR-M-pyrifera_M_contig115827:2..81622815674.777927-UTR-M-pyrifera_M_contig115827:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115827 3..8 +
1692277516.1346378-UTR-M-pyrifera_M_contig115827:2..81692277516.1346378-UTR-M-pyrifera_M_contig115827:2..8Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115827 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815674.7915885-CDS-M-pyrifera_M_contig115827:8..851622815674.7915885-CDS-M-pyrifera_M_contig115827:8..85Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115827 9..85 +
1692277516.145545-CDS-M-pyrifera_M_contig115827:8..851692277516.145545-CDS-M-pyrifera_M_contig115827:8..85Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115827 9..85 +
1622815674.8025048-CDS-M-pyrifera_M_contig115827:241..5241622815674.8025048-CDS-M-pyrifera_M_contig115827:241..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115827 242..524 +
1692277516.1539314-CDS-M-pyrifera_M_contig115827:241..5241692277516.1539314-CDS-M-pyrifera_M_contig115827:241..524Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115827 242..524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115827.3282.1

>prot_M-pyrifera_M_contig115827.3282.1 ID=prot_M-pyrifera_M_contig115827.3282.1|Name=mRNA_M-pyrifera_M_contig115827.3282.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MDGFDFGWFLTWVQFLMYTVFAAVERAVKKEAMSDRRAPLRNYILIGLLL
VCSMGFANVATSYVGFPTIVLFKSGKLIPVMIGGVFIMHRTYSGLEIGSA
ICISGGLVVLTLVCDCEFH*
back to top

mRNA from alignment at M-pyrifera_M_contig115827:3..524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115827.3282.1 ID=mRNA_M-pyrifera_M_contig115827.3282.1|Name=mRNA_M-pyrifera_M_contig115827.3282.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig115827:3..524+ (Macrocystis pyrifera P11B4 male)
TTCAGGATGGACGGATTCGACTTTGGCTGGTTCCTCACGTGGGTGCAGTT
TCTCATGTACACCGTATTTGCTGCTGTGGAACGGTACGCCGCCTGTCACT
CTCTCGCGTGACGCCTGTCTGCAAGAGAGAGGAGTGGGGGTAGGTAGACG
AGAGAGGAAGACAGAGACAGGTCACGCGCGAGACAAGGGGCAGACTAAGA
AAGGTATGGAGTCGATTCGAGATCCCTGACAGAGCCCAGGGCTGTGAAAA
AGGAGGCGATGAGCGACAGACGGGCGCCTCTTCGGAACTACATTCTGATC
GGCCTGCTTCTCGTCTGCTCCATGGGCTTTGCCAACGTTGCGACATCATA
CGTAGGCTTCCCTACGATCGTTCTTTTCAAGTCGGGCAAGCTCATTCCTG
TCATGATCGGAGGGGTGTTCATCATGCACCGCACCTACTCTGGGCTGGAG
ATTGGCTCGGCAATCTGCATCAGCGGAGGCCTTGTTGTACTCACTCTCGT
ATGTGACTGCGAGTTTCACTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115827:3..524+

>mRNA_M-pyrifera_M_contig115827.3282.1 ID=mRNA_M-pyrifera_M_contig115827.3282.1|Name=mRNA_M-pyrifera_M_contig115827.3282.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig115827:3..524+ (Macrocystis pyrifera P11B4 male)
ATGGACGGATTCGACTTTGGCTGGTTCCTCACGTGGGTGCAGTTTCTCAT
GTACACCGTATTTGCTGCTGTGGAACGATGGACGGATTCGACTTTGGCTG
GTTCCTCACGTGGGTGCAGTTTCTCATGTACACCGTATTTGCTGCTGTGG
AACGGGCTGTGAAAAAGGAGGCGATGAGCGACAGACGGGCGCCTCTTCGG
AACTACATTCTGATCGGCCTGCTTCTCGTCTGCTCCATGGGCTTTGCCAA
CGTTGCGACATCATACGTAGGCTTCCCTACGATCGTTCTTTTCAAGTCGG
GCAAGCTCATTCCTGTCATGATCGGAGGGGTGTTCATCATGCACCGCACC
TACTCTGGGCTGGAGATTGGCTCGGCAATCTGCATCAGCGGAGGCCTTGT
TGTACTCACTCTCGTATGTGACTGCGAGTTTCACTAGGGCTGTGAAAAAG
GAGGCGATGAGCGACAGACGGGCGCCTCTTCGGAACTACATTCTGATCGG
CCTGCTTCTCGTCTGCTCCATGGGCTTTGCCAACGTTGCGACATCATACG
TAGGCTTCCCTACGATCGTTCTTTTCAAGTCGGGCAAGCTCATTCCTGTC
ATGATCGGAGGGGTGTTCATCATGCACCGCACCTACTCTGGGCTGGAGAT
TGGCTCGGCAATCTGCATCAGCGGAGGCCTTGTTGTACTCACTCTCGTAT
GTGACTGCGAGTTTCACTAG
back to top