mRNA_M-pyrifera_M_contig115787.3266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115787.3266.1
Unique NamemRNA_M-pyrifera_M_contig115787.3266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.850e-20
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    4 MDAYCLVRFNYLCLRICTFASFWGMLVLTPVYAFTGSDG-DGIYYLTLANVSAGS 165
            MDAYCL+RFNYLCLRIC F+SFWGMLVLTPVYA  GSD  + IYYLTLANV +GS
Sbjct:  120 MDAYCLLRFNYLCLRICLFSSFWGMLVLTPVYALDGSDAVNTIYYLTLANVPSGS 174
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BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.250e-18
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 GMDAYCLVRFNYLCLRICTFASFWGMLVLTPVYAFTGSDG-DGIYYLTLANVSAGS 165
            GMDAYCL+RF YLCLRIC F+SFWGMLVLTPVY   GS+  + IYY+TLANV +GS
Sbjct:  117 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSEAVNTIYYVTLANVPSGS 172
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BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.400e-11
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:    1 GMDAYCLVRFNYLCLRICTFASFWGMLVLTPVYAFTGSDGDGIYYLTLANVSAG 162
            G DAY L+ F ++CL IC  +SFWGML+L P+YA  G+  +G Y LT+ NV  G
Sbjct:   80 GPDAYLLLSFEWMCLMICVVSSFWGMLLLAPLYASDGNQAEGFYQLTMINVPNG 133
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BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Match: A0A7S4D9P4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9P4_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 7.380e-10
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 GMDAYCLVRFNYLCLRICTFASFWGMLVLTPVYAFTGSDGDGIYYLTLANVSAGS 165
            GMDAY  +R+  LC RIC F+SFWG+LVL P+YA      D     +L NV+ GS
Sbjct:   68 GMDAYVFIRYLTLCFRICAFSSFWGLLVLLPIYASADIRNDNFSRFSLVNVTQGS 122
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BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Match: A0A7S0XE76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE76_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.750e-5
Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 GMDAYCLVRFNYLCLRICTFASFWGMLVLTPVY 99
            G+DAY L+R++ LCL++C F +FWG++VL P Y
Sbjct:  114 GLDAYMLLRYHVLCLKLCLFITFWGLVVLLPTY 146
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BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Match: A0A7S2W663_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W663_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.430e-5
Identity = 25/51 (49.02%), Postives = 31/51 (60.78%), Query Frame = 1 
Query:    1 GMDAYCLVRFNYLCLRICTFASFWGMLVLTPVYAFTGSDGDGIYYLTLANV 153
            G+DAY L+RF  LC+R+  F SF+G +VL PVY        G   LTL NV
Sbjct:  124 GLDAYMLLRFIRLCIRLTMFTSFFGGVVLIPVYYSGRGQASGFNKLTLNNV 174
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115787.3266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JF22_9PHAE3.850e-2080.00ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LGF9_ECTSI2.250e-1873.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAA7_9STRA6.400e-1151.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D9P4_HETAK7.380e-1050.91Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S0XE76_9STRA1.750e-554.55Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2W663_9STRA4.430e-549.02Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115787contigM-pyrifera_M_contig115787:185..349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue7e-14
Seed eggNOG ortholog2880.D8LGF9
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size165
Cds size162
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.941929-UTR-M-pyrifera_M_contig115787:184..1871622815673.941929-UTR-M-pyrifera_M_contig115787:184..187Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115787 185..187 +
1692277515.7391772-UTR-M-pyrifera_M_contig115787:184..1871692277515.7391772-UTR-M-pyrifera_M_contig115787:184..187Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115787 185..187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.9532278-CDS-M-pyrifera_M_contig115787:187..3491622815673.9532278-CDS-M-pyrifera_M_contig115787:187..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115787 188..349 +
1692277515.7536297-CDS-M-pyrifera_M_contig115787:187..3491692277515.7536297-CDS-M-pyrifera_M_contig115787:187..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115787 188..349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115787.3266.1prot_M-pyrifera_M_contig115787.3266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115787 188..349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115787.3266.1

>prot_M-pyrifera_M_contig115787.3266.1 ID=prot_M-pyrifera_M_contig115787.3266.1|Name=mRNA_M-pyrifera_M_contig115787.3266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MDAYCLVRFNYLCLRICTFASFWGMLVLTPVYAFTGSDGDGIYYLTLANV
SAGS
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mRNA from alignment at M-pyrifera_M_contig115787:185..349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115787.3266.1 ID=mRNA_M-pyrifera_M_contig115787.3266.1|Name=mRNA_M-pyrifera_M_contig115787.3266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig115787:185..349+ (Macrocystis pyrifera P11B4 male)
GGCATGGATGCCTACTGCCTCGTGCGGTTCAACTACCTCTGCCTCCGGAT
CTGCACCTTCGCTTCTTTTTGGGGCATGCTCGTGCTTACCCCGGTGTACG
CGTTCACTGGGTCGGACGGAGACGGAATTTACTACCTTACGTTGGCCAAC
GTTTCGGCGGGGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115787:185..349+

>mRNA_M-pyrifera_M_contig115787.3266.1 ID=mRNA_M-pyrifera_M_contig115787.3266.1|Name=mRNA_M-pyrifera_M_contig115787.3266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig115787:185..349+ (Macrocystis pyrifera P11B4 male)
ATGGATGCCTACTGCCTCGTGCGGTTCAACTACCTCTGCCTCCGGATCTG
CACCTTCGCTTCTTTTTGGGGCATGCTCGTGCTTACCCCGGTGTACGCGT
TCACTGGGTCGGACGGAGACGGAATTTACTACCTTACGTTGGCCAACGTT
TCGGCGGGGAGCATGGATGCCTACTGCCTCGTGCGGTTCAACTACCTCTG
CCTCCGGATCTGCACCTTCGCTTCTTTTTGGGGCATGCTCGTGCTTACCC
CGGTGTACGCGTTCACTGGGTCGGACGGAGACGGAATTTACTACCTTACG
TTGGCCAACGTTTCGGCGGGGAGC
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