mRNA_M-pyrifera_M_contig115694.3253.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115694.3253.1
Unique NamemRNA_M-pyrifera_M_contig115694.3253.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115694.3253.1 vs. uniprot
Match: A0A2G9PC83_9ARCH (Uncharacterized protein n=1 Tax=archaeon CG10_big_fil_rev_8_21_14_0_10_43_11 TaxID=1975556 RepID=A0A2G9PC83_9ARCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.560e-5
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   61 TECRFIARERAREEWEYSHAPDGEREEMVQILELRGFGVEDATTIIATMTKEESYTDFFIDFMCAHEL 264
            +E  +   ER REEWE  H P+GER EM+ + + +G+  +DA TI+ T+ K+      F+D M   EL
Sbjct:   95 SEREYQQSERTREEWEMRHYPEGERNEMIDLYQQKGYEKKDAITIVDTLLKKPRA---FVDTMMVDEL 159
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115694.3253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2G9PC83_9ARCH1.560e-539.71Uncharacterized protein n=1 Tax=archaeon CG10_big_... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115694contigM-pyrifera_M_contig115694:215..481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue8e-09
Seed eggNOG ortholog112098.XP_008610998.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.VIT family
EggNOG OGs2D0QF@1,2SEZP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.0475364-CDS-M-pyrifera_M_contig115694:214..4631622815673.0475364-CDS-M-pyrifera_M_contig115694:214..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115694 215..463 -
1692277515.2499123-CDS-M-pyrifera_M_contig115694:214..4631692277515.2499123-CDS-M-pyrifera_M_contig115694:214..463Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115694 215..463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815673.062826-UTR-M-pyrifera_M_contig115694:463..4811622815673.062826-UTR-M-pyrifera_M_contig115694:463..481Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115694 464..481 -
1692277515.2647023-UTR-M-pyrifera_M_contig115694:463..4811692277515.2647023-UTR-M-pyrifera_M_contig115694:463..481Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115694 464..481 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115694.3253.1prot_M-pyrifera_M_contig115694.3253.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115694 215..463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115694.3253.1

>prot_M-pyrifera_M_contig115694.3253.1 ID=prot_M-pyrifera_M_contig115694.3253.1|Name=mRNA_M-pyrifera_M_contig115694.3253.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MAAAFAGVRLLFRVTECRFIARERAREEWEYSHAPDGEREEMVQILELRG
FGVEDATTIIATMTKEESYTDFFIDFMCAHELS
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mRNA from alignment at M-pyrifera_M_contig115694:215..481-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115694.3253.1 ID=mRNA_M-pyrifera_M_contig115694.3253.1|Name=mRNA_M-pyrifera_M_contig115694.3253.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=267bp|location=Sequence derived from alignment at M-pyrifera_M_contig115694:215..481- (Macrocystis pyrifera P11B4 male)
GCAATTGCTCTGCCTACGATGGCTGCTGCATTTGCGGGGGTTCGATTGCT
TTTCCGCGTGACTGAGTGTCGTTTTATTGCGCGTGAGAGGGCGCGGGAGG
AGTGGGAGTACAGCCATGCGCCGGATGGGGAGAGGGAGGAAATGGTTCAG
ATTTTGGAATTGCGGGGCTTTGGGGTGGAAGATGCGACGACCATCATCGC
CACCATGACGAAAGAAGAGAGCTATACGGACTTCTTCATCGACTTTATGT
GCGCCCACGAACTGTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115694:215..481-

>mRNA_M-pyrifera_M_contig115694.3253.1 ID=mRNA_M-pyrifera_M_contig115694.3253.1|Name=mRNA_M-pyrifera_M_contig115694.3253.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig115694:215..481- (Macrocystis pyrifera P11B4 male)
ATGGCTGCTGCATTTGCGGGGGTTCGATTGCTTTTCCGCGTGACTGAGTG
TCGTTTTATTGCGCGTGAGAGGGCGCGGGAGGAGTGGGAGTACAGCCATG
CGCCGGATGGGGAGAGGGAGGAAATGGTTCAGATTTTGGAATTGCGGGGC
TTTGGGGTGGAAGATGCGACGACCATCATCGCCACCATGACGAAAGAAGA
GAGCTATACGGACTTCTTCATCGACTTTATGTGCGCCCACGAACTGTCCA
TGGCTGCTGCATTTGCGGGGGTTCGATTGCTTTTCCGCGTGACTGAGTGT
CGTTTTATTGCGCGTGAGAGGGCGCGGGAGGAGTGGGAGTACAGCCATGC
GCCGGATGGGGAGAGGGAGGAAATGGTTCAGATTTTGGAATTGCGGGGCT
TTGGGGTGGAAGATGCGACGACCATCATCGCCACCATGACGAAAGAAGAG
AGCTATACGGACTTCTTCATCGACTTTATGTGCGCCCACGAACTGTCC
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