mRNA_M-pyrifera_M_contig115658.3244.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115658.3244.1
Unique NamemRNA_M-pyrifera_M_contig115658.3244.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115658.3244.1 vs. uniprot
Match: A0A7S4MT69_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MT69_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 5.390e-20
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    1 QAPSRMVYPRDFVMSRGIRRKEDGTIISNHIACEHPKAGEVKGYVRGQLRASGYHIKPNDGGGCTVTYVVQVDPKG 228
            ++PS MV  RDFVM+R ++R +DGTI+SNH++     A + KG+VRG + ASGY +KPN  G  T  YVVQ+DPKG
Sbjct:  101 KSPSMMVTNRDFVMARAVKRCDDGTILSNHVSVVDDDAPDAKGFVRGDVFASGYWLKPNGDGTSTAAYVVQIDPKG 176
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BLAST of mRNA_M-pyrifera_M_contig115658.3244.1 vs. uniprot
Match: A0A7S1IDR3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IDR3_9EUGL)

HSP 1 Score: 60.8 bits (146), Expect = 2.180e-9
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1 
Query:   19 VYPRDFVMSRGIRRKEDGTIISNHIACEHPK----AGEVKGYVRGQLRASGYHIKPNDGGGCTVTYVVQVDPKG 228
            ++ RDFV +       DG+ +S   + EHPK    +G     VRG++  SGY++ PN+ G CTV+Y+VQ DPKG
Sbjct:  124 LWDRDFVWAELCTMLPDGSGLSCGCSVEHPKMPPESGGFFNAVRGEISCSGYYVSPNEDGTCTVSYLVQCDPKG 197
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BLAST of mRNA_M-pyrifera_M_contig115658.3244.1 vs. uniprot
Match: A0A0J9Y8S8_BRUMA (Bm1578 (Fragment) n=1 Tax=Brugia malayi TaxID=6279 RepID=A0A0J9Y8S8_BRUMA)

HSP 1 Score: 52.0 bits (123), Expect = 3.500e-7
Identity = 28/67 (41.79%), Postives = 34/67 (50.75%), Query Frame = 1 
Query:   28 RDFVMSRGIRRKEDGTIISNHIACEHPKAGEVKGYVRGQLRASGYHIKPNDGGGCTVTYVVQVDPKG 228
            RDFV+ R          I +H  C H K    KGY+RG +  + YHI+     GC VTYV   DPKG
Sbjct:    1 RDFVLQRSWLDTGKEKYICSHSVC-HKKYPPAKGYIRGVVHLTAYHIRDMGQNGCQVTYVNHSDPKG 66
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BLAST of mRNA_M-pyrifera_M_contig115658.3244.1 vs. uniprot
Match: A0A6B2LG69_9EUKA (START domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG69_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 2.310e-6
Identity = 32/72 (44.44%), Postives = 38/72 (52.78%), Query Frame = 1 
Query:   19 VYPRDFVMSRGIRRKEDGT--IISNHIACEHPKAGEVKGYVRGQLRASGYHIKPNDGGGCTVTYVVQVDPKG 228
            V  RDF   R   RKEDG+  II NH    H    E K YVR     +GY I+PN  G CT+ Y+ Q D +G
Sbjct:  100 VSGRDFCNQRSWWRKEDGSEYIIHNHSVI-HKDCPEKKQYVRAWSHMTGYMIRPNTDGTCTMVYLTQTDLRG 170
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BLAST of mRNA_M-pyrifera_M_contig115658.3244.1 vs. uniprot
Match: A0A0N4TU01_BRUPA (START domain-containing protein n=5 Tax=Onchocercidae TaxID=6296 RepID=A0A0N4TU01_BRUPA)

HSP 1 Score: 51.2 bits (121), Expect = 1.050e-5
Identity = 28/67 (41.79%), Postives = 34/67 (50.75%), Query Frame = 1 
Query:   28 RDFVMSRGIRRKEDGTIISNHIACEHPKAGEVKGYVRGQLRASGYHIKPNDGGGCTVTYVVQVDPKG 228
            RDFV+ R          I +H  C H K    KGY+RG +  + YHI+     GC VTYV   DPKG
Sbjct:  128 RDFVLQRSWLDIGKEKYICSHSVC-HKKYPPAKGYIRGVVHLTAYHIRDMGQNGCQVTYVNHSDPKG 193
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115658.3244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S4MT69_9EUKA5.390e-2053.95Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S1IDR3_9EUGL2.180e-941.89Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A0J9Y8S8_BRUMA3.500e-741.79Bm1578 (Fragment) n=1 Tax=Brugia malayi TaxID=6279... [more]
A0A6B2LG69_9EUKA2.310e-644.44START domain-containing protein n=1 Tax=Arcella in... [more]
A0A0N4TU01_BRUPA1.050e-541.79START domain-containing protein n=5 Tax=Onchocerci... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115658contigM-pyrifera_M_contig115658:127..354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size213
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.5003908-UTR-M-pyrifera_M_contig115658:126..1411622815672.5003908-UTR-M-pyrifera_M_contig115658:126..141Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115658 127..141 +
1692277515.0001369-UTR-M-pyrifera_M_contig115658:126..1411692277515.0001369-UTR-M-pyrifera_M_contig115658:126..141Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115658 127..141 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815672.5131245-CDS-M-pyrifera_M_contig115658:141..3541622815672.5131245-CDS-M-pyrifera_M_contig115658:141..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115658 142..354 +
1692277515.015551-CDS-M-pyrifera_M_contig115658:141..3541692277515.015551-CDS-M-pyrifera_M_contig115658:141..354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115658 142..354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115658.3244.1prot_M-pyrifera_M_contig115658.3244.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115658 142..354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115658.3244.1

>prot_M-pyrifera_M_contig115658.3244.1 ID=prot_M-pyrifera_M_contig115658.3244.1|Name=mRNA_M-pyrifera_M_contig115658.3244.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MVYPRDFVMSRGIRRKEDGTIISNHIACEHPKAGEVKGYVRGQLRASGYH
IKPNDGGGCTVTYVVQVDPKG
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mRNA from alignment at M-pyrifera_M_contig115658:127..354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115658.3244.1 ID=mRNA_M-pyrifera_M_contig115658.3244.1|Name=mRNA_M-pyrifera_M_contig115658.3244.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig115658:127..354+ (Macrocystis pyrifera P11B4 male)
CAGGCTCCCAGCCGTATGGTGTACCCCCGCGACTTCGTCATGAGCCGCGG
CATCCGCAGGAAGGAGGACGGCACCATCATCTCCAACCACATCGCCTGCG
AGCACCCGAAGGCTGGAGAGGTCAAGGGATACGTCCGTGGACAGCTGCGC
GCCAGCGGATACCACATCAAGCCCAACGACGGAGGCGGCTGCACCGTCAC
TTACGTCGTGCAGGTGGACCCCAAGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115658:127..354+

>mRNA_M-pyrifera_M_contig115658.3244.1 ID=mRNA_M-pyrifera_M_contig115658.3244.1|Name=mRNA_M-pyrifera_M_contig115658.3244.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig115658:127..354+ (Macrocystis pyrifera P11B4 male)
ATGGTGTACCCCCGCGACTTCGTCATGAGCCGCGGCATCCGCAGGAAGGA
GGACGGCACCATCATCTCCAACCACATCGCCTGCGAGCACCCGAAGGCTG
GAGAGGTCAAGGGATACGTCCGTGGACAGCTGCGCGCCAGCGGATACCAC
ATCAAGCCCAACGACGGAGGCGGCTGCACCGTCACTTACGTCGTGCAGGT
GGACCCCAAGGGCATGGTGTACCCCCGCGACTTCGTCATGAGCCGCGGCA
TCCGCAGGAAGGAGGACGGCACCATCATCTCCAACCACATCGCCTGCGAG
CACCCGAAGGCTGGAGAGGTCAAGGGATACGTCCGTGGACAGCTGCGCGC
CAGCGGATACCACATCAAGCCCAACGACGGAGGCGGCTGCACCGTCACTT
ACGTCGTGCAGGTGGACCCCAAGGGC
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