prot_M-pyrifera_M_contig115615.3232.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig115615.3232.1
Unique Nameprot_M-pyrifera_M_contig115615.3232.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length155
Homology
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BLAST of mRNA_M-pyrifera_M_contig115615.3232.1 vs. uniprot
Match: A0A0G4FGE1_9ALVE (EF-hand domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FGE1_9ALVE)

HSP 1 Score: 53.5 bits (127), Expect = 2.180e-5
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 0 
Query:   45 LVSVRVSRNPLGPLGVTALMEFLKDKAALRNVFIDSTDARDEGALAVAEAIGARK--NFKTVSMADNGISEEGFAALLKVAQENIFVTDLRL 134
            L+SV +S NPLGP GV AL + L   A L+++ +  TDAR EGA A+AE + A+K  + +T+ +A+N +   GF  L     E   V  LR+
Sbjct:  324 LLSVDLSDNPLGPFGVRALAKGLC--APLQSLRLGRTDARKEGAEALAEVLKAKKVSSLQTLDLAENEMWAGGFKPLAAALSELGAVPSLRV 413
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BLAST of mRNA_M-pyrifera_M_contig115615.3232.1 vs. uniprot
Match: UPI00190BC514 (hypothetical protein n=1 Tax=Noviherbaspirillum pedocola TaxID=2801341 RepID=UPI00190BC514)

HSP 1 Score: 52.0 bits (123), Expect = 7.420e-5
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0 
Query:    4 LCAFCDVLRGDTAMTELSLVDVG-LTEEAVDLLGPALADNTGLVSVRVSRNPLGPLGVTALMEFLK 68
            +C   D LR +T +T+L L D   L E+   +LG ALA NTG+V + +SR   GP G + L++ L+
Sbjct:  177 ICLIADALRSNTTVTKLVLYDCNTLNEDVAKMLGEALAKNTGIVGLELSRCDFGPRGWSFLLDALE 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115615.3232.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0G4FGE1_9ALVE2.180e-541.30EF-hand domain-containing protein n=1 Tax=Chromera... [more]
UPI00190BC5147.420e-540.91hypothetical protein n=1 Tax=Noviherbaspirillum pe... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 42..64
e-value: 0.43
score: 10.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..155
e-value: 6.7E-21
score: 76.2
NoneNo IPR availablePANTHERPTHR24107FAMILY NOT NAMEDcoord: 7..152
NoneNo IPR availablePROSITEPS51300NIRDcoord: 98..155
score: 8.544
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 6..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115615contigM-pyrifera_M_contig115615:34..498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115615.3232.1mRNA_M-pyrifera_M_contig115615.3232.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig115615 34..498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig115615.3232.1 ID=prot_M-pyrifera_M_contig115615.3232.1|Name=mRNA_M-pyrifera_M_contig115615.3232.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
PDVLCAFCDVLRGDTAMTELSLVDVGLTEEAVDLLGPALADNTGLVSVRV
SRNPLGPLGVTALMEFLKDKAALRNVFIDSTDARDEGALAVAEAIGARKN
FKTVSMADNGISEEGFAALLKVAQENIFVTDLRLGDNHGIDNERTKQIGN
VFKRN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf