mRNA_M-pyrifera_M_contig115474.3208.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115474.3208.1
Unique NamemRNA_M-pyrifera_M_contig115474.3208.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A0A5C3LHW5_9AGAR (LsmAD domain-containing protein n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3LHW5_9AGAR)

HSP 1 Score: 100 bits (248), Expect = 2.480e-22
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 1 
Query:   13 GGPRRLQRWVP--DGDTAATALDE---GLGSGTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERG 288
            G  R LQ WVP  DG+  AT  DE   G  +G+GAWDQF AN TLFGV+ASFDE  YTT +DR+ PD++ RE+ A RIA EI    + N HVAEERG
Sbjct:  168 GRERELQAWVPSGDGNAGATLGDEDTFGPNTGSGAWDQFTANETLFGVKASFDEDVYTTRIDRNAPDFKERERNAQRIANEIMGTTTNNPHVAEERG 264
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A0A197JHC0_9FUNG (LsmAD domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JHC0_9FUNG)

HSP 1 Score: 96.7 bits (239), Expect = 4.070e-21
Identity = 52/106 (49.06%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:   22 RRLQRWVPDGDTAATALDEGLGS----GTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERGRRSD---LSEEQL 318
            R L++W P+G+ +   +++ LG     G+ +WDQF AN  LFGV   FDE  YTT LDR+G DY+ REQ+A +IAQEI++  S+NVH+ EERG   D   L EE L
Sbjct:  184 RDLKKWAPEGNLSYGGIEDDLGDTNHHGSASWDQFAANERLFGVRTDFDEEIYTTKLDRTGADYKAREQQAMQIAQEIQQSVSSNVHMREERGLAVDDSGLDEEDL 289
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: G8BU30_TETPH (LsmAD domain-containing protein n=1 Tax=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) TaxID=1071381 RepID=G8BU30_TETPH)

HSP 1 Score: 96.3 bits (238), Expect = 5.500e-21
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:   22 RRLQRWVPDGDTAATALDEGLGSGTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERG 288
            R LQ+W P+ D ++ AL++GL  G+  WDQF  N   FGV +S+DE  YTT +D+S P+YR+R QEA ++A+EI+ Q S+N+HVAE+RG
Sbjct:  181 RELQKWAPEADDSS-ALNQGLDDGSSNWDQFAVNEKKFGVTSSYDEHFYTTKIDKSHPEYRKRLQEAEKLAKEIESQGSSNIHVAEDRG 268
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A0A4Q2E0Y1_9AGAR (LsmAD domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2E0Y1_9AGAR)

HSP 1 Score: 92.4 bits (228), Expect = 1.240e-19
Identity = 52/97 (53.61%), Postives = 62/97 (63.92%), Query Frame = 1 
Query:   13 GGPRRLQRWVPDGD--TAATALDE---GLGSGTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERG 288
            G  R LQ WVP  D   A++  DE   G  + T +WDQF  N  LFGV+ASFDE  YTT LDR+ PD++ RE+EA RIA EI    + N HVAEERG
Sbjct:  133 GRERELQAWVPSNDIPVASSNTDEDTFGTSNATTSWDQFSVNEQLFGVKASFDEEVYTTKLDRNAPDFKEREREAQRIANEILGATTNNPHVAEERG 229
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: W2S9F8_9EURO (LsmAD domain-containing protein n=1 Tax=Cyphellophora europaea CBS 101466 TaxID=1220924 RepID=W2S9F8_9EURO)

HSP 1 Score: 92.0 bits (227), Expect = 1.710e-19
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:   16 GPRRLQRWVPDGDTAATALDEGLGSG-TGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERG 288
            G R LQ+WVPD   A+ A D  L SG TG+WDQF AN+ LFG ++++DE+ YTT LDRS   YR RE +A ++A+EI+   S N HV EERG
Sbjct:  133 GERMLQKWVPD---ASDATDFSLESGNTGSWDQFAANKQLFGAQSTYDESYYTTHLDRSSESYRAREAKATKLAKEIEGSQSTNQHVREERG 221
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: PBP1_CRYNH (PAB1-binding protein 1 n=11 Tax=Cryptococcus TaxID=5206 RepID=PBP1_CRYNH)

HSP 1 Score: 91.7 bits (226), Expect = 2.300e-19
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 1 
Query:    7 RGGGP--RRLQRWVPDGDTAATALDEGLGS------GTG---AWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERGRRSDLSEEQ 315
            R  GP  R LQ WVPDG +     + G G+      GT     WDQFE N  LFG +  F E  YTT L++SGPD+ +RE+EA R+A++I  Q S N H+AEERG+ +D+ +E+
Sbjct:   84 RAAGPVERELQPWVPDGPSPPPQSNGGSGNADFETFGTTNNITWDQFETNERLFGAKTDFKEELYTTKLNKSGPDFHKREKEAERLAKQIMGQTSKNAHIAEERGQATDIRDEE 197
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A0A2B7XTH0_9EURO (LsmAD domain-containing protein n=1 Tax=Helicocarpus griseus UAMH5409 TaxID=1447875 RepID=A0A2B7XTH0_9EURO)

HSP 1 Score: 91.7 bits (226), Expect = 2.350e-19
Identity = 49/89 (55.06%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   22 RRLQRWVPDGDTAATALDEGLGSGTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERG 288
            R LQRW P  D       E  GSG   WDQFEAN  LFG   S+DE  YTT +DRS P Y+R+E EAARIA+EI+   + NVH+ EERG
Sbjct:  244 RELQRWEPGADAPVDMSLESSGSGN--WDQFEANERLFGATTSYDENLYTTKIDRSDPSYKRKEAEAARIAREIETSDTDNVHLREERG 330
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A0A1Y2GAT5_9FUNG (LsmAD domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GAT5_9FUNG)

HSP 1 Score: 90.9 bits (224), Expect = 4.320e-19
Identity = 52/106 (49.06%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   22 RRLQRWVPDGDTAATALDEGLGSG----TGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERGRRSD---LSEEQL 318
            R L++W P+   A T +++ LG         WDQF AN  LFGV+  FDE  YTT LDRSG DY+ REQ A +IA EI++  S NVH+ EERG   D   L EE L
Sbjct:  178 RDLKKWAPEEHVAFTGIEDELGDSHHHSRSGWDQFAANEKLFGVKTDFDEEIYTTKLDRSGADYKAREQHAIQIANEIQQSVSNNVHMREERGLAVDDSGLDEEDL 283
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A0A074WUT0_9PEZI (LsmAD domain-containing protein n=1 Tax=Aureobasidium namibiae CBS 147.97 TaxID=1043004 RepID=A0A074WUT0_9PEZI)

HSP 1 Score: 89.7 bits (221), Expect = 1.110e-18
Identity = 51/90 (56.67%), Postives = 56/90 (62.22%), Query Frame = 1 
Query:   22 RRLQRWVPDGDTAATALDEGL--GSGTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEER 285
            R LQRW P  DTA   +D  L   S  G WDQF AN  L+ V + +DE  YTT +DRS PDYRRR  EA RIA EI R A  N HVAEER
Sbjct:  225 RELQRWQPSADTA---IDMSLEDNSRPGEWDQFAANEALYNVRSDYDENIYTTTIDRSDPDYRRRAAEADRIADEINRSAPVNSHVAEER 311
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BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Match: A5DIA9_PICGU (LsmAD domain-containing protein n=3 Tax=Meyerozyma TaxID=766728 RepID=A5DIA9_PICGU)

HSP 1 Score: 88.6 bits (218), Expect = 2.750e-18
Identity = 46/95 (48.42%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:   22 RRLQRWVPDGDTAATALDEGLGSGTGAWDQFEANRTLFGVEASFDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERGRRSDLS 306
            R LQRWVPD D+   +L++   SG G WDQF+ N   FGV +++DE+ YTT ++ SG DY++R +EA  IA+EI+ Q+S + H+ EERG + D S
Sbjct:  178 RELQRWVPDDDSKMVSLED---SGKGHWDQFKVNEEKFGVGSTYDESLYTTKINTSGADYKKRLKEATIIAREIESQSSTDRHILEERGIQVDDS 269
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115474.3208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5C3LHW5_9AGAR2.480e-2257.73LsmAD domain-containing protein n=1 Tax=Coprinopsi... [more]
A0A197JHC0_9FUNG4.070e-2149.06LsmAD domain-containing protein n=1 Tax=Linnemanni... [more]
G8BU30_TETPH5.500e-2151.69LsmAD domain-containing protein n=1 Tax=Tetrapisis... [more]
A0A4Q2E0Y1_9AGAR1.240e-1953.61LsmAD domain-containing protein n=1 Tax=Candolleom... [more]
W2S9F8_9EURO1.710e-1954.35LsmAD domain-containing protein n=1 Tax=Cyphelloph... [more]
PBP1_CRYNH2.300e-1945.61PAB1-binding protein 1 n=11 Tax=Cryptococcus TaxID... [more]
A0A2B7XTH0_9EURO2.350e-1955.06LsmAD domain-containing protein n=1 Tax=Helicocarp... [more]
A0A1Y2GAT5_9FUNG4.320e-1949.06LsmAD domain-containing protein n=1 Tax=Lobosporan... [more]
A0A074WUT0_9PEZI1.110e-1856.67LsmAD domain-containing protein n=1 Tax=Aureobasid... [more]
A5DIA9_PICGU2.750e-1848.42LsmAD domain-containing protein n=3 Tax=Meyerozyma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115474contigM-pyrifera_M_contig115474:182..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score98.6
Seed ortholog evalue1.9e-18
Seed eggNOG ortholog43228.XP_007737924.1
Preferred namePBP1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005844,GO:0006139,GO:0006259,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010603,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031440,GO:0031441,GO:0032268,GO:0032270,GO:0032991,GO:0033043,GO:0034063,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0035770,GO:0036464,GO:0043007,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043570,GO:0043933,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0045727,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1900363,GO:1900364,GO:1901360,GO:1901363,GO:1902115,GO:1903311,GO:1903312,GO:1990904,GO:2000112
EggNOG free text desc.LsmAD
EggNOG OGs20G7Z@147545,39USB@33154,3MPUY@451870,3NVG9@4751,3QJU4@4890,COG5180@1,KOG2375@2759
COG Functional cat.A
Best tax levelChaetothyriomycetidae
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.447076-CDS-M-pyrifera_M_contig115474:181..4991622815670.447076-CDS-M-pyrifera_M_contig115474:181..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115474 182..499 +
1692277514.0148647-CDS-M-pyrifera_M_contig115474:181..4991692277514.0148647-CDS-M-pyrifera_M_contig115474:181..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115474 182..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115474.3208.1prot_M-pyrifera_M_contig115474.3208.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115474 182..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115474.3208.1

>prot_M-pyrifera_M_contig115474.3208.1 ID=prot_M-pyrifera_M_contig115474.3208.1|Name=mRNA_M-pyrifera_M_contig115474.3208.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
GGRGGGPRRLQRWVPDGDTAATALDEGLGSGTGAWDQFEANRTLFGVEAS
FDEAAYTTPLDRSGPDYRRREQEAARIAQEIKRQASANVHVAEERGRRSD
LSEEQL
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mRNA from alignment at M-pyrifera_M_contig115474:182..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115474.3208.1 ID=mRNA_M-pyrifera_M_contig115474.3208.1|Name=mRNA_M-pyrifera_M_contig115474.3208.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig115474:182..499+ (Macrocystis pyrifera P11B4 male)
GGAGGGAGGGGCGGAGGGCCTCGACGGCTGCAGCGGTGGGTTCCTGACGG
CGACACCGCCGCCACTGCGTTGGACGAAGGCCTAGGCAGCGGCACAGGCG
CCTGGGATCAGTTCGAAGCCAACCGCACGCTCTTTGGCGTCGAGGCCAGC
TTCGACGAGGCGGCCTACACCACGCCCCTCGACCGCTCCGGCCCCGACTA
CCGCAGACGCGAGCAGGAGGCCGCGCGCATTGCACAGGAGATCAAGCGCC
AGGCCAGCGCCAACGTTCACGTCGCCGAGGAGCGTGGCCGCCGCTCCGAC
CTTTCCGAGGAACAACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115474:182..499+

>mRNA_M-pyrifera_M_contig115474.3208.1 ID=mRNA_M-pyrifera_M_contig115474.3208.1|Name=mRNA_M-pyrifera_M_contig115474.3208.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig115474:182..499+ (Macrocystis pyrifera P11B4 male)
GGAGGGAGGGGCGGAGGGCCTCGACGGCTGCAGCGGTGGGTTCCTGACGG
CGACACCGCCGCCACTGCGTTGGACGAAGGCCTAGGCAGCGGCACAGGCG
CCTGGGATCAGTTCGAAGCCAACCGCACGCTCTTTGGCGTCGAGGCCAGC
TTCGACGAGGCGGCCTACACCACGCCCCTCGACCGCTCCGGCCCCGACTA
CCGCAGACGCGAGCAGGAGGCCGCGCGCATTGCACAGGAGATCAAGCGCC
AGGCCAGCGCCAACGTTCACGTCGCCGAGGAGCGTGGCCGCCGCTCCGAC
CTTTCCGAGGAACAACTGGGAGGGAGGGGCGGAGGGCCTCGACGGCTGCA
GCGGTGGGTTCCTGACGGCGACACCGCCGCCACTGCGTTGGACGAAGGCC
TAGGCAGCGGCACAGGCGCCTGGGATCAGTTCGAAGCCAACCGCACGCTC
TTTGGCGTCGAGGCCAGCTTCGACGAGGCGGCCTACACCACGCCCCTCGA
CCGCTCCGGCCCCGACTACCGCAGACGCGAGCAGGAGGCCGCGCGCATTG
CACAGGAGATCAAGCGCCAGGCCAGCGCCAACGTTCACGTCGCCGAGGAG
CGTGGCCGCCGCTCCGACCTTTCCGAGGAACAACTG
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