mRNA_M-pyrifera_M_contig115427.3199.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115427.3199.1
Unique NamemRNA_M-pyrifera_M_contig115427.3199.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig115427.3199.1 vs. uniprot
Match: D8LU92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU92_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 4.060e-17
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 EIRAAFLRFFVSIFRGYLAHVIMPTSNTPYPEKLFQKEAFLKS 129
            EIRAAFLRFFVSIFRGYLAHV+MPTS++PYPEKLF KEAFLKS
Sbjct:  671 EIRAAFLRFFVSIFRGYLAHVVMPTSSSPYPEKLFAKEAFLKS 713
[Close]
BLAST of mRNA_M-pyrifera_M_contig115427.3199.1 vs. uniprot
Match: A0A836CKZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKZ6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.060e-9
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 EIRAAFLRFFVSIFRGYLAHVIMPTSNTPYPEKLFQKEAFLK 126
            EIRAAFLRFFVSIFR Y  ++++PT   P+P++LF +EAFLK
Sbjct:  979 EIRAAFLRFFVSIFRTYQDYLVVPTPQDPFPKELFDREAFLK 1020
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115427.3199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU92_ECTSI4.060e-1790.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKZ6_9STRA4.060e-964.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115427contigM-pyrifera_M_contig115427:313..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue7.3e-14
Seed eggNOG ortholog2880.D8LU92
KEGG koko:K12486,ko:K20164
KEGG Pathwayko04144,map04144
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005938,GO:0006950,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0016020,GO:0017016,GO:0017048,GO:0019899,GO:0030139,GO:0030587,GO:0031152,GO:0031267,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032009,GO:0032502,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0044764,GO:0045335,GO:0048365,GO:0048856,GO:0050896,GO:0051020,GO:0051703,GO:0051704,GO:0051716,GO:0071496,GO:0071944,GO:0090702,GO:0097708,GO:0098630,GO:0098743,GO:0099120,GO:0099568
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5347@1,KOG0703@2759,KOG2127@1,KOG2127@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size129
Cds size129
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.0848618-CDS-M-pyrifera_M_contig115427:312..4411622815670.0848618-CDS-M-pyrifera_M_contig115427:312..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115427 313..441 +
1692277513.9064503-CDS-M-pyrifera_M_contig115427:312..4411692277513.9064503-CDS-M-pyrifera_M_contig115427:312..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115427 313..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115427.3199.1prot_M-pyrifera_M_contig115427.3199.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115427 313..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115427.3199.1

>prot_M-pyrifera_M_contig115427.3199.1 ID=prot_M-pyrifera_M_contig115427.3199.1|Name=mRNA_M-pyrifera_M_contig115427.3199.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=43bp
EIRAAFLRFFVSIFRGYLAHVIMPTSNTPYPEKLFQKEAFLKS
back to top

mRNA from alignment at M-pyrifera_M_contig115427:313..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115427.3199.1 ID=mRNA_M-pyrifera_M_contig115427.3199.1|Name=mRNA_M-pyrifera_M_contig115427.3199.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=129bp|location=Sequence derived from alignment at M-pyrifera_M_contig115427:313..441+ (Macrocystis pyrifera P11B4 male)
GAGATTCGGGCGGCATTCTTGAGGTTCTTCGTTTCCATCTTCCGCGGGTA
CTTGGCGCACGTCATCATGCCGACCAGCAACACACCCTACCCCGAGAAGC
TATTCCAGAAGGAGGCGTTCCTTAAGAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115427:313..441+

>mRNA_M-pyrifera_M_contig115427.3199.1 ID=mRNA_M-pyrifera_M_contig115427.3199.1|Name=mRNA_M-pyrifera_M_contig115427.3199.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig115427:313..441+ (Macrocystis pyrifera P11B4 male)
GAGATTCGGGCGGCATTCTTGAGGTTCTTCGTTTCCATCTTCCGCGGGTA
CTTGGCGCACGTCATCATGCCGACCAGCAACACACCCTACCCCGAGAAGC
TATTCCAGAAGGAGGCGTTCCTTAAGAGCGAGATTCGGGCGGCATTCTTG
AGGTTCTTCGTTTCCATCTTCCGCGGGTACTTGGCGCACGTCATCATGCC
GACCAGCAACACACCCTACCCCGAGAAGCTATTCCAGAAGGAGGCGTTCC
TTAAGAGC
back to top