mRNA_M-pyrifera_M_contig115180.3162.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115180.3162.1
Unique NamemRNA_M-pyrifera_M_contig115180.3162.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115180.3162.1 vs. uniprot
Match: UPI001CCD4F41 (hypothetical protein n=1 Tax=Bremerella volcania TaxID=2527984 RepID=UPI001CCD4F41)

HSP 1 Score: 191 bits (485), Expect = 3.910e-59
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = 1 
Query:    4 KAREAVVGGWIFNRRPRPNPDSCPDGSCNPDLPPAPIEGENNAPPEEEPAKEPPPAKASTPLADLVISIFGDRAKPWVNGFNPAETLIAGGIVGGAVWWKRRKNRKAGKT 333
            K RE  VGGW+FNRRPRPNP+ CP  +CNPDLPPAPIEGENNAPPE+EPAKE PPAK+STP ADL ISIFG+RAKPWVNGFNPAET+IAGG+VG A WWKRRKNRK  K+
Sbjct:  151 KVREHRVGGWLFNRRPRPNPNVCPGPNCNPDLPPAPIEGENNAPPEDEPAKETPPAKSSTPWADLAISIFGERAKPWVNGFNPAETVIAGGLVGAAFWWKRRKNRKTPKS 260
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115180.3162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CCD4F413.910e-5980.00hypothetical protein n=1 Tax=Bremerella volcania T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115180contigM-pyrifera_M_contig115180:232..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.166257-CDS-M-pyrifera_M_contig115180:231..5671622815668.166257-CDS-M-pyrifera_M_contig115180:231..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115180 232..567 -
1692277512.9618483-CDS-M-pyrifera_M_contig115180:231..5671692277512.9618483-CDS-M-pyrifera_M_contig115180:231..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115180 232..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115180.3162.1prot_M-pyrifera_M_contig115180.3162.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115180 232..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115180.3162.1

>prot_M-pyrifera_M_contig115180.3162.1 ID=prot_M-pyrifera_M_contig115180.3162.1|Name=mRNA_M-pyrifera_M_contig115180.3162.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
RKAREAVVGGWIFNRRPRPNPDSCPDGSCNPDLPPAPIEGENNAPPEEEP
AKEPPPAKASTPLADLVISIFGDRAKPWVNGFNPAETLIAGGIVGGAVWW
KRRKNRKAGKT*
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mRNA from alignment at M-pyrifera_M_contig115180:232..567-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115180.3162.1 ID=mRNA_M-pyrifera_M_contig115180.3162.1|Name=mRNA_M-pyrifera_M_contig115180.3162.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=336bp|location=Sequence derived from alignment at M-pyrifera_M_contig115180:232..567- (Macrocystis pyrifera P11B4 male)
CGCAAGGCACGCGAAGCCGTCGTCGGCGGTTGGATCTTCAACCGACGGCC
GCGACCTAATCCGGACAGCTGCCCCGATGGAAGTTGTAACCCCGATCTAC
CGCCCGCGCCGATCGAAGGAGAGAACAACGCACCGCCGGAGGAAGAACCC
GCCAAGGAACCGCCGCCGGCAAAGGCGTCGACCCCACTGGCCGACCTGGT
GATATCGATCTTCGGCGATCGTGCCAAGCCTTGGGTTAATGGATTCAACC
CGGCGGAAACGCTGATCGCCGGCGGAATCGTTGGCGGGGCGGTCTGGTGG
AAACGCCGGAAGAATCGCAAGGCCGGCAAAACCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115180:232..567-

>mRNA_M-pyrifera_M_contig115180.3162.1 ID=mRNA_M-pyrifera_M_contig115180.3162.1|Name=mRNA_M-pyrifera_M_contig115180.3162.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig115180:232..567- (Macrocystis pyrifera P11B4 male)
CGCAAGGCACGCGAAGCCGTCGTCGGCGGTTGGATCTTCAACCGACGGCC
GCGACCTAATCCGGACAGCTGCCCCGATGGAAGTTGTAACCCCGATCTAC
CGCCCGCGCCGATCGAAGGAGAGAACAACGCACCGCCGGAGGAAGAACCC
GCCAAGGAACCGCCGCCGGCAAAGGCGTCGACCCCACTGGCCGACCTGGT
GATATCGATCTTCGGCGATCGTGCCAAGCCTTGGGTTAATGGATTCAACC
CGGCGGAAACGCTGATCGCCGGCGGAATCGTTGGCGGGGCGGTCTGGTGG
AAACGCCGGAAGAATCGCAAGGCCGGCAAAACCTAACGCAAGGCACGCGA
AGCCGTCGTCGGCGGTTGGATCTTCAACCGACGGCCGCGACCTAATCCGG
ACAGCTGCCCCGATGGAAGTTGTAACCCCGATCTACCGCCCGCGCCGATC
GAAGGAGAGAACAACGCACCGCCGGAGGAAGAACCCGCCAAGGAACCGCC
GCCGGCAAAGGCGTCGACCCCACTGGCCGACCTGGTGATATCGATCTTCG
GCGATCGTGCCAAGCCTTGGGTTAATGGATTCAACCCGGCGGAAACGCTG
ATCGCCGGCGGAATCGTTGGCGGGGCGGTCTGGTGGAAACGCCGGAAGAA
TCGCAAGGCCGGCAAAACCTAA
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