mRNA_M-pyrifera_M_contig115141.3153.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115141.3153.1
Unique NamemRNA_M-pyrifera_M_contig115141.3153.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: A0A8J4UYA2_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4UYA2_9MYCE)

HSP 1 Score: 104 bits (259), Expect = 3.020e-23
Identity = 60/145 (41.38%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    1 GELESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNN----PGEEI--DYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL 417
              L S + L +N  A      LD  P+   ++  DA  V +I PCV RD+KDII+CLGGIKVL PL  Q++Q + PN+    P E+     T +++   Q LAL  DML  S+  + EM RCQGF ++G+LL++  PE+ T  +L
Sbjct: 1547 SSLTSHLFLNYNCRAIDGDLCLDNTPDIGGDRNYDAVLV-SINPCVSRDIKDIIYCLGGIKVLFPLIPQINQSIDPNSLSMIPDEDNFKTVTNNSKLTFQVLALFKDMLRGSEAIQEEMLRCQGFSVMGYLLQQITPENLTLGSL 1690          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: UPI0006451263 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006451263)

HSP 1 Score: 103 bits (258), Expect = 4.110e-23
Identity = 55/137 (40.15%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    7 LESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL 417
            L S++ L +N  A      LD  P    ++  D   + ++ PCV RD+KDII+CLGGIKVL PL  Q++Q L    P    D  T  + I+Q L L  DML  S+ N+ EM RC G P++ +LL+   PE+ T+  L
Sbjct: 1301 LTSRLFLSYNCRAIEGDQCLDTTPNIGADRHFDGT-LHSVHPCVSRDIKDIIYCLGGIKVLFPLLPQMNQQLLQQQPENATD--TANKLIIQILGLFRDMLRGSEANQEEMLRCNGMPVLAYLLQMLPPEYITTGVL 1434          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: D3BT75_POLPP (BEACH domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BT75_POLPP)

HSP 1 Score: 100 bits (250), Expect = 4.910e-22
Identity = 55/133 (41.35%), Postives = 77/133 (57.89%), Query Frame = 1
Query:    7 LESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFT 405
            L +++ L +N  A      LD  P    ++  DA  V  I PCV RD+KDII+CLGGIKVL PL  QL+Q LA      ++D T+ ++  +Q L L  DML  S+ N+ EM RC G  ++ +LL+   PE+ T
Sbjct: 1521 LTNRLFLNYNCRAIEGDLCLDNTPNIGGDRNYDATLVA-INPCVSRDIKDIIYCLGGIKVLFPLIPQLNQTLA----DPQLDSTSSSKLTIQVLGLFKDMLRGSEANQEEMLRCNGLAVLSYLLQTIPPENLT 1648          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: F0ZLG9_DICPU (Uncharacterized protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZLG9_DICPU)

HSP 1 Score: 100 bits (249), Expect = 6.630e-22
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    1 GELESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYIL----QALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFT 405
              L S + L +N  A      LD  P+   ++  DA  V +I PCV RD+KDII+CLGGIKVL PL  Q++Q   P +  ++   +  T        Q LAL   ML +S+ N+ EM RCQGF ++G+LL++  PE+ T
Sbjct:  380 SSLTSHLFLNYNCRALDGDLCLDNTPDIGGDRNYDATLV-SINPCVSRDLKDIIYCLGGIKVLFPLIQQINQKQQPTSSEDQSTDSNSTMINFKLTNQVLALFKHMLKESEANQEEMLRCQGFSVMGYLLQQISPEYLT 517          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: A0A151Z3T4_9MYCE (BEACH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z3T4_9MYCE)

HSP 1 Score: 99.8 bits (247), Expect = 1.250e-21
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    1 GELESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL 417
              L + + L +N  A      LD  P    ++  DA  V +I PCV RD+KDII+CLGGI+VL PL  Q+   + P N  E       ++  +Q LAL  DML  SD N+ EM RC GF ++G+LL++  PE+ T+  L
Sbjct: 1480 SSLTNHLFLNYNCRAIEGDLCLDNTPNMGGDRNYDATLV-SINPCVSRDIKDIIYCLGGIRVLFPLIHQIST-MPPQNSSE----INSSKLTIQVLALFKDMLFGSDANQEEMLRCSGFKVMGYLLQQIQPENLTNGAL 1612          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: LVSC_DICDI (BEACH domain-containing protein lvsC n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=LVSC_DICDI)

HSP 1 Score: 98.2 bits (243), Expect = 4.270e-21
Identity = 57/158 (36.08%), Postives = 82/158 (51.90%), Query Frame = 1
Query:    1 GELESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAP-----------------------NNPGEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFT 405
              L S + L +N  A      LD  P+   +K  DA  V +I PCV RD+KDII+CLGGIKVL PL  Q++ P++P                           E++  + + +   Q LAL   ML +S+ N+ EM RCQGF ++G+LL++  PE+ T
Sbjct:  436 SSLTSHLFLNYNCRALDGDLCLDNTPDIGGDKNYDATLV-SINPCVSRDIKDIIYCLGGIKVLFPLIQQINNPISPLSLELITNENXXXXXXXXXXXSQQQTLEQLQQSINIKLTNQVLALFKFMLKESEANQEEMLRCQGFSVMGYLLQQISPEYLT 592          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: F4PIN9_CAVFA (BEACH domain-containing protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIN9_CAVFA)

HSP 1 Score: 96.3 bits (238), Expect = 2.030e-20
Identity = 55/139 (39.57%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    1 GELESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL 417
              L S++ L +N  A      LD +     +   DA  V +I PCV RD+KDII+CLGGIKVLLPL  Q++  LA  +P  E+  T++++  +Q L L  DML  S+ N+ EM R  G  ++ +LL++  PE+ T + L
Sbjct: 1620 SSLTSRLFLNYNCRAIEGDICLDNSLASGGDHNKDATLV-SINPCVSRDIKDIIYCLGGIKVLLPLIPQINMTLA--DPSREL--TSNSELTIQVLGLFKDMLRGSEANQEEMLRVHGLSVLSYLLQQVPPENLTLDAL 1753          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: UPI000644CBFB (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644CBFB)

HSP 1 Score: 90.1 bits (222), Expect = 2.890e-18
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    7 LESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNP---GEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL 417
            L +++ L +N  A      LD  P    ++  DA  V +I PC+ RD+KDII+CLGGIKVL PL  Q +Q     +       ID + + +  +Q LAL  DML  S+ N+ EM RC+G  ++ +LL++   ++ T   L
Sbjct: 1480 LTNRLFLSYNCRAIDGDICLDNTPNIGVDRNCDAALV-SINPCISRDIKDIIYCLGGIKVLFPLIPQANQSSLGGSSLSSSSVIDPSNNARLTMQILALFKDMLRGSEANQEEMLRCKGLSVLSYLLQQIPSDNLTQYVL 1618          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: A0A1Y1I8F1_KLENI (WD40 and Beach domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I8F1_KLENI)

HSP 1 Score: 87.8 bits (216), Expect = 1.860e-17
Identity = 52/165 (31.52%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    7 LESKIVLYFNSTARVAKFYLDLAP--EKNREKRLDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLA--------PNNP--------------------GEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSE 411
            L  ++VL +N+ A + +   + AP  E++ E   DA  +G    CV R ++D+IHC+GGI  LLPLF QLDQP+A        P +P                     + +D+  D    ++ +  L  ML     N+ +M   QGF ++G  LE+  P+H T E
Sbjct: 1449 LAPRVVLAYNAQASLGRTVYNNAPFAEQSAELAYDAAILGGTQLCVTRKMQDVIHCVGGIPSLLPLFTQLDQPVASSPDLDSEPTSPVSPSNSTTSPEALSSLQNETSKSLDFAVDHSMAVEVIGALSAMLTSHPANQEDMHANQGFAVVGHQLERVSPQHLTVE 1613          
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Match: A0A6A5BID4_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BID4_NAEFO)

HSP 1 Score: 77.4 bits (189), Expect = 7.990e-14
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  100 LDAKQVGNIFPCVKRDVKDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYILQALALLGDMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL 417
            L+A+ +     CV  + KDII CLGGIKVL PLF QLD+ L+  +    ++  ++   +    +LL D+L +   N  +M RC+GF +I FLL++  P+H T  T+
Sbjct: 1570 LNARILNGTQLCVTHNAKDIIGCLGGIKVLFPLFLQLDR-LSHTDQVVSVNDRSEPYMVNTLFSLLIDLLSEHVDNLEDMARCRGFLVISFLLKQISPQHLTRSTV 1674          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115141.3153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4UYA2_9MYCE3.020e-2341.38Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI00064512634.110e-2340.15hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BT75_POLPP4.910e-2241.35BEACH domain-containing protein n=1 Tax=Polysphond... [more]
F0ZLG9_DICPU6.630e-2240.29Uncharacterized protein (Fragment) n=1 Tax=Dictyos... [more]
A0A151Z3T4_9MYCE1.250e-2140.29BEACH domain-containing protein n=1 Tax=Tieghemost... [more]
LVSC_DICDI4.270e-2136.08BEACH domain-containing protein lvsC n=1 Tax=Dicty... [more]
F4PIN9_CAVFA2.030e-2039.57BEACH domain-containing protein n=1 Tax=Cavenderia... [more]
UPI000644CBFB2.890e-1836.43hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A1Y1I8F1_KLENI1.860e-1731.52WD40 and Beach domain-containing protein n=1 Tax=K... [more]
A0A6A5BID4_NAEFO7.990e-1438.68Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115141contigM-pyrifera_M_contig115141:24..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue6.4e-19
Seed eggNOG ortholog5786.XP_003288258.1
Preferred nameNBEAL1
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001501,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002520,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006996,GO:0007275,GO:0007596,GO:0007599,GO:0008150,GO:0009611,GO:0009653,GO:0009987,GO:0010256,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030097,GO:0030099,GO:0030141,GO:0030154,GO:0030219,GO:0030220,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032989,GO:0033363,GO:0035855,GO:0036230,GO:0036344,GO:0042060,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048468,GO:0048513,GO:0048534,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050817,GO:0050878,GO:0050896,GO:0051179,GO:0051234,GO:0060348,GO:0061515,GO:0065007,GO:0065008,GO:0070820,GO:0070821,GO:0070889,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098751,GO:0098805,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.Domain of unknown function (DUF4800)
EggNOG OGs3XC6M@554915,KOG1787@1,KOG1787@2759
COG Functional cat.U
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815667.8133545-CDS-M-pyrifera_M_contig115141:23..4401622815667.8133545-CDS-M-pyrifera_M_contig115141:23..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115141 24..440 -
1692277512.8317666-CDS-M-pyrifera_M_contig115141:23..4401692277512.8317666-CDS-M-pyrifera_M_contig115141:23..440Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115141 24..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115141.3153.1prot_M-pyrifera_M_contig115141.3153.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115141 24..440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115141.3153.1

>prot_M-pyrifera_M_contig115141.3153.1 ID=prot_M-pyrifera_M_contig115141.3153.1|Name=mRNA_M-pyrifera_M_contig115141.3153.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
GELESKIVLYFNSTARVAKFYLDLAPEKNREKRLDAKQVGNIFPCVKRDV
KDIIHCLGGIKVLLPLFAQLDQPLAPNNPGEEIDYTTDTQYILQALALLG
DMLGKSDTNEREMERCQGFPIIGFLLEKAVPEHFTSETL
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mRNA from alignment at M-pyrifera_M_contig115141:24..440-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115141.3153.1 ID=mRNA_M-pyrifera_M_contig115141.3153.1|Name=mRNA_M-pyrifera_M_contig115141.3153.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig115141:24..440- (Macrocystis pyrifera P11B4 male)
GGTGAGCTGGAGAGCAAGATTGTCCTGTACTTCAACAGCACTGCTCGAGT GGCCAAGTTCTACCTGGACCTGGCACCAGAGAAGAATCGTGAGAAGCGCT TGGATGCCAAGCAGGTGGGCAACATCTTCCCCTGTGTGAAGAGGGATGTG AAGGACATCATCCATTGCCTCGGAGGCATCAAGGTGCTCCTCCCTCTCTT TGCTCAGCTGGACCAGCCCCTGGCACCCAACAACCCCGGCGAAGAGATTG ACTACACCACCGACACCCAGTACATCCTTCAGGCACTCGCTCTGCTCGGT GACATGCTTGGCAAGAGTGACACCAACGAGCGGGAGATGGAGCGCTGCCA GGGCTTCCCCATCATTGGCTTCCTCCTCGAGAAGGCTGTGCCAGAGCACT TCACCAGCGAGACTCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115141:24..440-

>mRNA_M-pyrifera_M_contig115141.3153.1 ID=mRNA_M-pyrifera_M_contig115141.3153.1|Name=mRNA_M-pyrifera_M_contig115141.3153.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig115141:24..440- (Macrocystis pyrifera P11B4 male)
GGTGAGCTGGAGAGCAAGATTGTCCTGTACTTCAACAGCACTGCTCGAGT
GGCCAAGTTCTACCTGGACCTGGCACCAGAGAAGAATCGTGAGAAGCGCT
TGGATGCCAAGCAGGTGGGCAACATCTTCCCCTGTGTGAAGAGGGATGTG
AAGGACATCATCCATTGCCTCGGAGGCATCAAGGTGCTCCTCCCTCTCTT
TGCTCAGCTGGACCAGCCCCTGGCACCCAACAACCCCGGCGAAGAGATTG
ACTACACCACCGACACCCAGTACATCCTTCAGGCACTCGCTCTGCTCGGT
GACATGCTTGGCAAGAGTGACACCAACGAGCGGGAGATGGAGCGCTGCCA
GGGCTTCCCCATCATTGGCTTCCTCCTCGAGAAGGCTGTGCCAGAGCACT
TCACCAGCGAGACTCTCGGTGAGCTGGAGAGCAAGATTGTCCTGTACTTC
AACAGCACTGCTCGAGTGGCCAAGTTCTACCTGGACCTGGCACCAGAGAA
GAATCGTGAGAAGCGCTTGGATGCCAAGCAGGTGGGCAACATCTTCCCCT
GTGTGAAGAGGGATGTGAAGGACATCATCCATTGCCTCGGAGGCATCAAG
GTGCTCCTCCCTCTCTTTGCTCAGCTGGACCAGCCCCTGGCACCCAACAA
CCCCGGCGAAGAGATTGACTACACCACCGACACCCAGTACATCCTTCAGG
CACTCGCTCTGCTCGGTGACATGCTTGGCAAGAGTGACACCAACGAGCGG
GAGATGGAGCGCTGCCAGGGCTTCCCCATCATTGGCTTCCTCCTCGAGAA
GGCTGTGCCAGAGCACTTCACCAGCGAGACTCTC
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