mRNA_M-pyrifera_M_contig114983.3112.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114983.3112.1
Unique NamemRNA_M-pyrifera_M_contig114983.3112.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: L8HD96_ACACA (Silent information regulator protein Sir2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HD96_ACACA)

HSP 1 Score: 92.0 bits (227), Expect = 4.980e-20
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   13 CQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLASRRSPAYKR----IEINPDPSALTSAMDMHIAAPSGEALPLIVARYKE 303
            C S+LRPDAVLF E LP  AW+AAD A+   + GDVMLVVGTSG V PAASL        KR    IEINP PSA++S + M +  PSG+ LP +V   +E
Sbjct:  200 CGSYLRPDAVLFMESLPSHAWNAADHAV---SSGDVMLVVGTSGVVYPAASLPEEA--LEKRGVHVIEINPVPSAISSRVSMFLKGPSGQILPPLVDMVRE 295          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A0M9FZA0_9TRYP (Putative NAD dependent deacetylasemidazole (Cobb) protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9FZA0_9TRYP)

HSP 1 Score: 82.8 bits (203), Expect = 8.350e-17
Identity = 46/101 (45.54%), Postives = 62/101 (61.39%), Query Frame = 1
Query:    1 KCLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLASRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVARYKE 303
            +C  C S  RPD VLFTE LP  AW  ++ A+  +  GDV+LVVGTSG VQP ASL    +P   +IE+N + +A +  M++ I   S  ALPL++   KE
Sbjct:  176 RCAICGSPARPDVVLFTESLPEDAWLKSEVAVCGLRAGDVLLVVGTSGVVQPGASLPELCAPGVVKIEVNIEHTAHSKGMNVCIRQSSSIALPLLLQLAKE 276          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A1F5Z472_9BACT (NAD-dependent protein deacylase n=2 Tax=Candidatus Glassbacteria TaxID=1817805 RepID=A0A1F5Z472_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 3.030e-16
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 1
Query:    1 KCLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASL---ASRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVAR 294
            +C  C S+LRPD V F E LP  A    + A +     D+MLVVGTSG VQPAASL   A RR    + IE+NPDPS +T +  + +   SGE LP +VAR
Sbjct:  151 RCKACYSYLRPDVVWFGESLPARA---LEEAFKSAENCDLMLVVGTSGLVQPAASLPGMARRRG--ARIIEVNPDPSEITPSAHLFLQGKSGEVLPEVVAR 246          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A7G2C9J5_9TRYP (Sir2 family, putative n=1 Tax=Angomonas deanei TaxID=59799 RepID=A0A7G2C9J5_9TRYP)

HSP 1 Score: 80.9 bits (198), Expect = 3.820e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   13 CQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLASRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVARYKEL 306
            C S  RPDAVLFTE LP   W  A+  +R++  GDV+LV+GT+G V PAA L         +IE+N +PS  T+ MD+ +   S  +LP I+   K+L
Sbjct:  171 CGSSARPDAVLFTETLPEDQWTGAEKVMRELQRGDVLLVIGTTGQVYPAAGLPDMVRKGVTKIELNIEPSNHTAHMDIFVKESSAVSLPKILEEAKKL 268          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A7Y5QC13_9CHLR (NAD-dependent protein deacylase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7Y5QC13_9CHLR)

HSP 1 Score: 79.0 bits (193), Expect = 1.580e-15
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    1 KCLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLA--SRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVARYKE 303
            KC  C++F+RPD V F E LP  A  AA +A       +VML+VGTSG V PAA L   +R+S A   IE NP PSA+T  +++HIA  +G ALP ++A  +E
Sbjct:  150 KCPHCEAFVRPDVVWFGEALPAVALSAAQSASATA---EVMLIVGTSGMVTPAADLPYIARQSGAAL-IEFNPLPSAITPIVNLHIAETAGVALPRLLAALEE 248          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: UPI001CFE6AC6 (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001CFE6AC6)

HSP 1 Score: 79.7 bits (195), Expect = 2.420e-15
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   13 CQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLASRRSPAYKR----IEINPDPSALTSAMDMH-IAAPSGEALPLIVARYKEL 306
            C+S LRPD VLFTEGLP   W+ +  A+R+M EGDVMLV+GTS  V PAA L S    A KR    IE N + +   +  + H +  PSG  LP IV R  EL
Sbjct:  227 CKSTLRPDCVLFTEGLPVDQWNRSYDAVRRMREGDVMLVIGTSAKVYPAAGLPSV---AAKRGAYIIEFNIEETDYNTLPNYHFVKGPSGVTLPRIVDRVIEL 326          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A6A5C336_NAEFO (Deacetylase sirtuin-type domain-containing protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5C336_NAEFO)

HSP 1 Score: 79.7 bits (195), Expect = 2.650e-15
Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   13 CQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLASRRSPAYKR----IEINPDPSALTSAMDMH-IAAPSGEALPLIVARYKEL 306
            C+S LRPD VLFTEGLP   W+ +  A+R+M EGDVMLV+GTS  V PAA L S    A KR    IE N + +   +  + H +  PSG  LP IV R  EL
Sbjct:  239 CRSTLRPDCVLFTEGLPMDQWNPSYDAVRRMREGDVMLVIGTSAKVYPAAGLPSV---AAKRGAFIIEFNIEETDYNTLPNYHFVKGPSGVTLPRIVNRVIEL 338          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A7C7V7G5_9CHLR (NAD-dependent protein deacylase n=2 Tax=Anaerolineae TaxID=292625 RepID=A0A7C7V7G5_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 3.550e-15
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 KCLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASL--ASRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIV 288
            +C +C S LRPD V F E LPG A DAA  A +   E +VMLVVGTSG VQPAASL   +    AY   EINP  +AL+  M + +  P+GE LP +V
Sbjct:  151 RCPECGSLLRPDVVWFGEALPGEALDAAWQAAQ---EAEVMLVVGTSGVVQPAASLPLVAAEHGAYLA-EINPQETALSRFMAVMLRGPAGEVLPALV 244          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A6L9J6W2_9CHLR (NAD-dependent protein deacylase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L9J6W2_9CHLR)

HSP 1 Score: 78.2 bits (191), Expect = 3.650e-15
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = 1
Query:    4 CLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASL--ASRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVARYKEL 306
            C +C +++RPD V + E LP AA    + A       DVMLVVGTSG  QPAASL  A++R+     IE+NP+PS +T+  D ++  PSGE LP IVA  + L
Sbjct:  156 CPRCGAWVRPDVVWYEELLPPAA---IERAFNLSEVADVMLVVGTSGVTQPAASLPFAAKRA-GGTLIEVNPEPSQITAIADHYLPGPSGEVLPQIVAAMRAL 254          
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Match: A0A3N3ZNF0_9MICC (NAD-dependent protein deacylase n=2 Tax=Kocuria TaxID=57493 RepID=A0A3N3ZNF0_9MICC)

HSP 1 Score: 77.8 bits (190), Expect = 6.980e-15
Identity = 43/99 (43.43%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 KCLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAVQPAASLA-SRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVAR 294
            +CL+C + +RP  V F E LP   WDA + A + M E D++LV+GTSG VQPAASL  +        +EINP+ +  ++  D  +  PSG ALPL++A+
Sbjct:  194 ECLECDARIRPGVVWFGEALP---WDAFEAAEQSMTEADLVLVIGTSGIVQPAASLPLAALGLGVPVVEINPEATEFSAYADYTVRLPSGTALPLMMAK 289          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114983.3112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8HD96_ACACA4.980e-2054.46Silent information regulator protein Sir2, putativ... [more]
A0A0M9FZA0_9TRYP8.350e-1745.54Putative NAD dependent deacetylasemidazole (Cobb) ... [more]
A0A1F5Z472_9BACT3.030e-1648.51NAD-dependent protein deacylase n=2 Tax=Candidatus... [more]
A0A7G2C9J5_9TRYP3.820e-1643.88Sir2 family, putative n=1 Tax=Angomonas deanei Tax... [more]
A0A7Y5QC13_9CHLR1.580e-1547.57NAD-dependent protein deacylase n=1 Tax=Anaeroline... [more]
UPI001CFE6AC62.420e-1549.51uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5C336_NAEFO2.650e-1549.51Deacetylase sirtuin-type domain-containing protein... [more]
A0A7C7V7G5_9CHLR3.550e-1551.02NAD-dependent protein deacylase n=2 Tax=Anaeroline... [more]
A0A6L9J6W2_9CHLR3.650e-1546.60NAD-dependent protein deacylase n=1 Tax=Chloroflex... [more]
A0A3N3ZNF0_9MICC6.980e-1543.43NAD-dependent protein deacylase n=2 Tax=Kocuria Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114983contigM-pyrifera_M_contig114983:1..399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArchaea
Seed ortholog score80.1
Seed ortholog evalue7e-13
Seed eggNOG ortholog444157.Tneu_0872
Preferred namecobB
KEGG koko:K12410
Hectar predicted targeting categoryother localisation
EggNOG free text desc.form. Deacetylates the N-terminal lysine residue of Alba, the major archaeal chromatin protein and that, in turn, increases Alba's DNA binding affinity, thereby repressing transcription
EggNOG OGs2XQBQ@28889,COG0846@1,arCOG04248@2157
COG Functional cat.K
Best tax levelCrenarchaeota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size327
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.7029867-CDS-M-pyrifera_M_contig114983:0..1021622815665.7029867-CDS-M-pyrifera_M_contig114983:0..102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114983 1..102 +
1692277511.8558989-CDS-M-pyrifera_M_contig114983:0..1021692277511.8558989-CDS-M-pyrifera_M_contig114983:0..102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114983 1..102 +
1622815665.7182446-CDS-M-pyrifera_M_contig114983:174..3991622815665.7182446-CDS-M-pyrifera_M_contig114983:174..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114983 175..399 +
1692277511.8675928-CDS-M-pyrifera_M_contig114983:174..3991692277511.8675928-CDS-M-pyrifera_M_contig114983:174..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114983 175..399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114983.3112.1prot_M-pyrifera_M_contig114983.3112.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114983 1..399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114983.3112.1

>prot_M-pyrifera_M_contig114983.3112.1 ID=prot_M-pyrifera_M_contig114983.3112.1|Name=mRNA_M-pyrifera_M_contig114983.3112.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
KCLQCQSFLRPDAVLFTEGLPGAAWDAADTAIRKMNEGDVMLVVGTSGAV
QPAASLASRRSPAYKRIEINPDPSALTSAMDMHIAAPSGEALPLIVARYK
ELLLSERE*
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mRNA from alignment at M-pyrifera_M_contig114983:1..399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114983.3112.1 ID=mRNA_M-pyrifera_M_contig114983.3112.1|Name=mRNA_M-pyrifera_M_contig114983.3112.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=399bp|location=Sequence derived from alignment at M-pyrifera_M_contig114983:1..399+ (Macrocystis pyrifera P11B4 male)
AAATGCCTCCAATGCCAATCCTTCCTGCGCCCTGACGCCGTCCTCTTTAC GGAAGGCCTGCCAGGCGCCGCATGGGATGCAGCTGACACAGCAATTCGCA AGGTACGGCCTTTGCGGAAACTGCGCTAAGGATAAGCTGCTTTAAAAGTG ACTGACACATGATGGCGGACACAGATGAATGAAGGAGACGTCATGCTGGT GGTGGGGACCAGTGGGGCAGTGCAGCCTGCTGCCAGCCTGGCATCTCGGA GGTCTCCTGCATACAAGCGCATTGAGATCAACCCGGACCCATCTGCCTTA ACTTCGGCGATGGATATGCACATTGCTGCCCCTTCAGGGGAGGCTCTCCC ACTCATTGTGGCAAGGTACAAGGAGCTACTCTTATCAGAGAGAGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114983:1..399+

>mRNA_M-pyrifera_M_contig114983.3112.1 ID=mRNA_M-pyrifera_M_contig114983.3112.1|Name=mRNA_M-pyrifera_M_contig114983.3112.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig114983:1..399+ (Macrocystis pyrifera P11B4 male)
AAATGCCTCCAATGCCAATCCTTCCTGCGCCCTGACGCCGTCCTCTTTAC
GGAAGGCCTGCCAGGCGCCGCATGGGATGCAGCTGACACAGCAATTCGCA
AGAAATGCCTCCAATGCCAATCCTTCCTGCGCCCTGACGCCGTCCTCTTT
ACGGAAGGCCTGCCAGGCGCCGCATGGGATGCAGCTGACACAGCAATTCG
CAAGATGAATGAAGGAGACGTCATGCTGGTGGTGGGGACCAGTGGGGCAG
TGCAGCCTGCTGCCAGCCTGGCATCTCGGAGGTCTCCTGCATACAAGCGC
ATTGAGATCAACCCGGACCCATCTGCCTTAACTTCGGCGATGGATATGCA
CATTGCTGCCCCTTCAGGGGAGGCTCTCCCACTCATTGTGGCAAGGTACA
AGGAGCTACTCTTATCAGAGAGAGAATAGATGAATGAAGGAGACGTCATG
CTGGTGGTGGGGACCAGTGGGGCAGTGCAGCCTGCTGCCAGCCTGGCATC
TCGGAGGTCTCCTGCATACAAGCGCATTGAGATCAACCCGGACCCATCTG
CCTTAACTTCGGCGATGGATATGCACATTGCTGCCCCTTCAGGGGAGGCT
CTCCCACTCATTGTGGCAAGGTACAAGGAGCTACTCTTATCAGAGAGAGA
ATAG
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