mRNA_M-pyrifera_M_contig114981.3110.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114981.3110.1
Unique NamemRNA_M-pyrifera_M_contig114981.3110.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114981.3110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114981contigM-pyrifera_M_contig114981:9..311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog5786.XP_003287108.1
Preferred nameLZTR1
KEGG koko:K13709,ko:K20285
KEGG Pathwayko04510,ko04670,map04510,map04670
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000281,GO:0000910,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005938,GO:0007049,GO:0008150,GO:0008360,GO:0009987,GO:0012505,GO:0022402,GO:0022603,GO:0022604,GO:0032153,GO:0032187,GO:0032506,GO:0032878,GO:0036214,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044448,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051285,GO:0051286,GO:0051301,GO:0061160,GO:0061172,GO:0061640,GO:0065007,GO:0065008,GO:0071944,GO:0099568,GO:0099738,GO:1902405,GO:1902410,GO:1903047,GO:2000099,GO:2000100,GO:2000114,GO:2000769
EggNOG free text desc.Kelch motif
EggNOG OGs3XBHY@554915,KOG0379@1,KOG0379@2759,KOG4271@1,KOG4271@2759
COG Functional cat.T
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.602746-CDS-M-pyrifera_M_contig114981:8..3111622815665.602746-CDS-M-pyrifera_M_contig114981:8..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114981 9..311 -
1692277511.819885-CDS-M-pyrifera_M_contig114981:8..3111692277511.819885-CDS-M-pyrifera_M_contig114981:8..311Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114981 9..311 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114981.3110.1prot_M-pyrifera_M_contig114981.3110.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114981 9..311 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114981.3110.1

>prot_M-pyrifera_M_contig114981.3110.1 ID=prot_M-pyrifera_M_contig114981.3110.1|Name=mRNA_M-pyrifera_M_contig114981.3110.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
PRLGHTASPVHGGLLIFGGICNDKLQDNGLYFFCTDLTNSDAHLFRSLSA
EGMPPAPRYGHTATTVRHEDSATTHLFIVGGITVQPGGPRRILRDMHVFD
T
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mRNA from alignment at M-pyrifera_M_contig114981:9..311-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114981.3110.1 ID=mRNA_M-pyrifera_M_contig114981.3110.1|Name=mRNA_M-pyrifera_M_contig114981.3110.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig114981:9..311- (Macrocystis pyrifera P11B4 male)
CCTCGCCTCGGACACACTGCCTCGCCAGTGCACGGGGGTCTGCTGATATT
TGGAGGCATTTGCAACGACAAGCTGCAGGACAACGGGCTGTACTTCTTCT
GCACCGACCTCACCAACTCCGATGCGCACCTGTTTCGCAGCCTCTCTGCG
GAAGGTATGCCCCCGGCGCCACGGTACGGCCATACAGCAACAACAGTGCG
ACACGAAGACTCTGCCACCACGCACCTGTTCATCGTTGGCGGGATCACCG
TCCAGCCTGGTGGGCCGCGGAGAATCCTGCGCGACATGCACGTGTTCGAC
ACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114981:9..311-

>mRNA_M-pyrifera_M_contig114981.3110.1 ID=mRNA_M-pyrifera_M_contig114981.3110.1|Name=mRNA_M-pyrifera_M_contig114981.3110.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig114981:9..311- (Macrocystis pyrifera P11B4 male)
CCTCGCCTCGGACACACTGCCTCGCCAGTGCACGGGGGTCTGCTGATATT
TGGAGGCATTTGCAACGACAAGCTGCAGGACAACGGGCTGTACTTCTTCT
GCACCGACCTCACCAACTCCGATGCGCACCTGTTTCGCAGCCTCTCTGCG
GAAGGTATGCCCCCGGCGCCACGGTACGGCCATACAGCAACAACAGTGCG
ACACGAAGACTCTGCCACCACGCACCTGTTCATCGTTGGCGGGATCACCG
TCCAGCCTGGTGGGCCGCGGAGAATCCTGCGCGACATGCACGTGTTCGAC
ACGCCTCGCCTCGGACACACTGCCTCGCCAGTGCACGGGGGTCTGCTGAT
ATTTGGAGGCATTTGCAACGACAAGCTGCAGGACAACGGGCTGTACTTCT
TCTGCACCGACCTCACCAACTCCGATGCGCACCTGTTTCGCAGCCTCTCT
GCGGAAGGTATGCCCCCGGCGCCACGGTACGGCCATACAGCAACAACAGT
GCGACACGAAGACTCTGCCACCACGCACCTGTTCATCGTTGGCGGGATCA
CCGTCCAGCCTGGTGGGCCGCGGAGAATCCTGCGCGACATGCACGTGTTC
GACACG
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