mRNA_M-pyrifera_M_contig11496.3106.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11496.3106.1
Unique NamemRNA_M-pyrifera_M_contig11496.3106.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11496.3106.1 vs. uniprot
Match: D7FYA0_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA0_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 6.200e-32
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    1 AAEVEEQYSPPALVQAVLDASARSAPLGVEGVFAAMARDDVFMEEMWQKKPFFCDASLPSLAGKYTLDDVQAAVDADFVE 240
            A+  +EQYSPP LV A+ + SA+S PLGVEG+F+AMARDDVF+ E+WQKKPFFCDASLPSLAG+YTLDDVQ AVD+DFVE
Sbjct:   59 ASAADEQYSPPQLVAALRETSAQSPPLGVEGIFSAMARDDVFVNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVE 138
[Close]
BLAST of mRNA_M-pyrifera_M_contig11496.3106.1 vs. uniprot
Match: A0A6H5JGT6_9PHAE (Bifunctional lysine-specific demethylase and histidyl-hydroxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.970e-18
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:  106 MARDDVFMEEMWQKKPFFCDASLPSLAGKYTLDDVQAAVDADFVE 240
            MARDDVF+ E+WQKKPFFCDASLPSLAG+YTLDDVQ AVD+DFVE
Sbjct:    1 MARDDVFVNELWQKKPFFCDASLPSLAGQYTLDDVQQAVDSDFVE 45
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11496.3106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYA0_ECTSI6.200e-3275.00JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGT6_9PHAE3.970e-1886.67Bifunctional lysine-specific demethylase and histi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11496contigM-pyrifera_M_contig11496:8389..9752 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.8e-27
Seed eggNOG ortholog2880.D7FYA0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cupin superfamily protein
EggNOG OGs2CYFP@1,2S42U@2759
Ec32 ortholog descriptionSecreted cupin superfamily protein
Ec32 orthologEc-24_003250.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.3606782-CDS-M-pyrifera_M_contig11496:8388..85231622815665.3606782-CDS-M-pyrifera_M_contig11496:8388..8523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11496 8389..8523 +
1692277511.682842-CDS-M-pyrifera_M_contig11496:8388..85231692277511.682842-CDS-M-pyrifera_M_contig11496:8388..8523Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11496 8389..8523 +
1622815665.3738108-CDS-M-pyrifera_M_contig11496:9647..97521622815665.3738108-CDS-M-pyrifera_M_contig11496:9647..9752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11496 9648..9752 +
1692277511.6963043-CDS-M-pyrifera_M_contig11496:9647..97521692277511.6963043-CDS-M-pyrifera_M_contig11496:9647..9752Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11496 9648..9752 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11496.3106.1prot_M-pyrifera_M_contig11496.3106.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11496 8389..9752 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11496.3106.1

>prot_M-pyrifera_M_contig11496.3106.1 ID=prot_M-pyrifera_M_contig11496.3106.1|Name=mRNA_M-pyrifera_M_contig11496.3106.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
AAEVEEQYSPPALVQAVLDASARSAPLGVEGVFAAMARDDVFMEEMWQKK
PFFCDASLPSLAGKYTLDDVQAAVDADFVE
back to top

mRNA from alignment at M-pyrifera_M_contig11496:8389..9752+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11496.3106.1 ID=mRNA_M-pyrifera_M_contig11496.3106.1|Name=mRNA_M-pyrifera_M_contig11496.3106.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1364bp|location=Sequence derived from alignment at M-pyrifera_M_contig11496:8389..9752+ (Macrocystis pyrifera P11B4 male)
GCCGCGGAGGTAGAGGAGCAATATTCCCCTCCGGCATTGGTGCAAGCCGT
CCTCGATGCGTCGGCCCGATCCGCCCCCCTTGGCGTTGAGGGGGTCTTCG
CAGCGATGGCTCGAGATGATGTCTTCATGGAGGAGGTGAAGCTATGACAC
TATCGATAGACTGATACGGCGAGGCCTTCTGTCTGTTGTCGCCGTGAGGC
AGGACAGGGCTCTGATCCCCATTAAGGCTGAACTCCCGTTTTGGTAGACG
AATTATTAGGAATTAGAGTTAAAGGTGTGTTTCTGTGCACTGCACTGTTG
ATACTGAAACGATCAAAACACTACAGACATTATTTTGTGTTCTCACGTAT
ATTCATACGTCCTGTGAATTCTGTCGTATCGTTTTGCTTGTACGTATTTT
TTTGGCAAACGCCACGGCGCGCTTACGCTGCTGTTTGGTTCGGTATTCGT
GCGAAGTTCAGAATGGCTTCCTGCCGTGTGCTGCTGATTCGTTCGATTGG
TGCGACAGGGCACTTTTTTTTTTGCAGACGCGAGAAAGGGGCAGAGCCCT
TGGAGGACGGGAGAACGCCTCCCACACGAGAGTAGTAATGGTTTTTCTGT
AGTGCGGTGTTAGTACGGAGCACAAGCTTATGGTACAGTAGCTTCTGCTG
TGGCTGTGTCCAGTTACGTGTTTTTTCTTTACGTTTCACCGCGCACAAAA
CAGAATTTTCGATAGTGTGGTCAGGCATTTTTCAAAAAGCGGGTGTGTAG
TTGTAGTTGTACCTGAAGCGGTATATATTAACCCGCGCGGGACACCTCGA
TAGCGACTTGGAGCAGTGATAACAATTGGCGTTATGTTTCGTCCGCGAGC
GGCGTGAGCTCCCTGCAGCACTGCACGGGGTAGAAGGTCCTGCTGCTGTG
CCCGTGCCGTCCGACTCCTTGCATTCAACCGTTGTAACTCGGACACCAAC
CATTGCATTTTCTCCCCAAAATCATGCGTGGCCGTTGCCGCAAATAAATC
CCTTTTTTTTTTTTTTGGTCGTCAATCGTCCCCAAGAGGGGTCTTGACAT
GTAAAGGCTGTTGTTGTTGTTTGTTTCATCACGTATTGTGGTTGTTGTTG
TTGTCAAGGACTCTATTTTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGG
GGTGGTGGTGGTGGTGACTCCATGTGTGTTGTTCGTTTGTGATGATGATG
ATGATGCTGCTGCTGCTGCTGCTGCTGCTGCCGGCGGTGTCGTTTCTCTT
TCCCGACAGATGTGGCAGAAGAAGCCCTTCTTTTGCGACGCGAGCCTTCC
CAGCCTGGCGGGGAAGTACACTCTGGACGATGTGCAAGCCGCCGTCGACG
CCGACTTTGTCGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11496:8389..9752+

>mRNA_M-pyrifera_M_contig11496.3106.1 ID=mRNA_M-pyrifera_M_contig11496.3106.1|Name=mRNA_M-pyrifera_M_contig11496.3106.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig11496:8389..9752+ (Macrocystis pyrifera P11B4 male)
GCCGCGGAGGTAGAGGAGCAATATTCCCCTCCGGCATTGGTGCAAGCCGT
CCTCGATGCGTCGGCCCGATCCGCCCCCCTTGGCGTTGAGGGGGTCTTCG
CAGCGATGGCTCGAGATGATGTCTTCATGGAGGAGGCCGCGGAGGTAGAG
GAGCAATATTCCCCTCCGGCATTGGTGCAAGCCGTCCTCGATGCGTCGGC
CCGATCCGCCCCCCTTGGCGTTGAGGGGGTCTTCGCAGCGATGGCTCGAG
ATGATGTCTTCATGGAGGAGATGTGGCAGAAGAAGCCCTTCTTTTGCGAC
GCGAGCCTTCCCAGCCTGGCGGGGAAGTACACTCTGGACGATGTGCAAGC
CGCCGTCGACGCCGACTTTGTCGAGATGTGGCAGAAGAAGCCCTTCTTTT
GCGACGCGAGCCTTCCCAGCCTGGCGGGGAAGTACACTCTGGACGATGTG
CAAGCCGCCGTCGACGCCGACTTTGTCGAG
back to top