mRNA_M-pyrifera_M_contig114805.3078.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114805.3078.1
Unique NamemRNA_M-pyrifera_M_contig114805.3078.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114805.3078.1 vs. uniprot
Match: A0A220NYU7_9RICK (17 kDa surface antigen (Fragment) n=1 Tax=Rickettsia endosymbiont of Haemaphysalis bispinosa TaxID=2016473 RepID=A0A220NYU7_9RICK)

HSP 1 Score: 56.2 bits (134), Expect = 4.630e-8
Identity = 32/99 (32.32%), Postives = 43/99 (43.43%), Query Frame = 1 
Query:   10 LIGGAVGGGIGAKLDADDRK----KRQYAMDVVAGRDVGDQVAWATPEKQTAGSVVKLGNVFEVDGQQCMLVEETVTIKGKPTRVEDTMCRDPHGEWSI 294
            L+GG +GG IGA +D  DR+      Q A++       G  V W  P+    G V          GQ C    +TV I GK  +     CR P G+W +
Sbjct:   12 LLGGDLGGQIGAGMDEQDRRLAELTSQRALETAPS---GSNVEWRNPDNGNYGYVTPNKTYRNSTGQYCREYTQTVVIGGKQQKAYGNACRQPDGQWQV 107
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114805.3078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A220NYU7_9RICK4.630e-832.3217 kDa surface antigen (Fragment) n=1 Tax=Ricketts... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114805contigM-pyrifera_M_contig114805:263..568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.025322-CDS-M-pyrifera_M_contig114805:262..5681622815664.025322-CDS-M-pyrifera_M_contig114805:262..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114805 263..568 -
1692277511.085283-CDS-M-pyrifera_M_contig114805:262..5681692277511.085283-CDS-M-pyrifera_M_contig114805:262..568Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114805 263..568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114805.3078.1prot_M-pyrifera_M_contig114805.3078.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114805 263..568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114805.3078.1

>prot_M-pyrifera_M_contig114805.3078.1 ID=prot_M-pyrifera_M_contig114805.3078.1|Name=mRNA_M-pyrifera_M_contig114805.3078.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=102bp
IGALIGGAVGGGIGAKLDADDRKKRQYAMDVVAGRDVGDQVAWATPEKQT
AGSVVKLGNVFEVDGQQCMLVEETVTIKGKPTRVEDTMCRDPHGEWSIAA
I*
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mRNA from alignment at M-pyrifera_M_contig114805:263..568-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114805.3078.1 ID=mRNA_M-pyrifera_M_contig114805.3078.1|Name=mRNA_M-pyrifera_M_contig114805.3078.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=306bp|location=Sequence derived from alignment at M-pyrifera_M_contig114805:263..568- (Macrocystis pyrifera P11B4 male)
ATCGGCGCCCTGATTGGCGGTGCCGTTGGCGGCGGGATCGGAGCGAAACT
CGACGCGGATGATCGGAAGAAGCGACAGTACGCGATGGATGTTGTCGCGG
GCAGGGACGTCGGCGATCAGGTGGCCTGGGCTACCCCGGAGAAACAAACC
GCCGGCTCCGTCGTGAAGCTGGGAAACGTATTCGAAGTCGATGGCCAACA
ATGCATGCTCGTCGAGGAGACGGTGACGATCAAGGGCAAACCCACCCGGG
TCGAAGACACGATGTGCCGCGATCCGCACGGCGAATGGTCGATCGCGGCA
ATCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114805:263..568-

>mRNA_M-pyrifera_M_contig114805.3078.1 ID=mRNA_M-pyrifera_M_contig114805.3078.1|Name=mRNA_M-pyrifera_M_contig114805.3078.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig114805:263..568- (Macrocystis pyrifera P11B4 male)
ATCGGCGCCCTGATTGGCGGTGCCGTTGGCGGCGGGATCGGAGCGAAACT
CGACGCGGATGATCGGAAGAAGCGACAGTACGCGATGGATGTTGTCGCGG
GCAGGGACGTCGGCGATCAGGTGGCCTGGGCTACCCCGGAGAAACAAACC
GCCGGCTCCGTCGTGAAGCTGGGAAACGTATTCGAAGTCGATGGCCAACA
ATGCATGCTCGTCGAGGAGACGGTGACGATCAAGGGCAAACCCACCCGGG
TCGAAGACACGATGTGCCGCGATCCGCACGGCGAATGGTCGATCGCGGCA
ATCTAGATCGGCGCCCTGATTGGCGGTGCCGTTGGCGGCGGGATCGGAGC
GAAACTCGACGCGGATGATCGGAAGAAGCGACAGTACGCGATGGATGTTG
TCGCGGGCAGGGACGTCGGCGATCAGGTGGCCTGGGCTACCCCGGAGAAA
CAAACCGCCGGCTCCGTCGTGAAGCTGGGAAACGTATTCGAAGTCGATGG
CCAACAATGCATGCTCGTCGAGGAGACGGTGACGATCAAGGGCAAACCCA
CCCGGGTCGAAGACACGATGTGCCGCGATCCGCACGGCGAATGGTCGATC
GCGGCAATCTAG
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