mRNA_M-pyrifera_M_contig114788.3071.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114788.3071.1
Unique NamemRNA_M-pyrifera_M_contig114788.3071.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114788.3071.1 vs. uniprot
Match: A0A2K9LDH5_9RHOO (Uncharacterized protein n=2 Tax=Rhodocyclales TaxID=206389 RepID=A0A2K9LDH5_9RHOO)

HSP 1 Score: 49.7 bits (117), Expect = 5.170e-5
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    1 MTISDSKSDPVSGFTLLETIVAFVIISISLAIAVRTVSFSIHNAERTRVETQLRNIAKVVLTENEALIRLGIDESG-TVDQHFSWHLSVNP 270
            M+I       VSGF+LLE +VAF I++I+L +       S+  A+ T   T+   +A+ +L+ N A+ R GI  SG T +  F W LS  P
Sbjct:    1 MSIRQVSPRHVSGFSLLEVLVAFTIMAIALGVLYHAAGGSMRGAQATDRNTRALILAQSLLSLNSAVPRQGIRLSGSTANGEFDWSLSSEP 91
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114788.3071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2K9LDH5_9RHOO5.170e-537.36Uncharacterized protein n=2 Tax=Rhodocyclales TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114788contigM-pyrifera_M_contig114788:92..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.610882-CDS-M-pyrifera_M_contig114788:91..4691622815663.610882-CDS-M-pyrifera_M_contig114788:91..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114788 92..469 +
1692277510.905989-CDS-M-pyrifera_M_contig114788:91..4691692277510.905989-CDS-M-pyrifera_M_contig114788:91..469Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114788 92..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114788.3071.1prot_M-pyrifera_M_contig114788.3071.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114788 92..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114788.3071.1

>prot_M-pyrifera_M_contig114788.3071.1 ID=prot_M-pyrifera_M_contig114788.3071.1|Name=mRNA_M-pyrifera_M_contig114788.3071.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MTISDSKSDPVSGFTLLETIVAFVIISISLAIAVRTVSFSIHNAERTRVE
TQLRNIAKVVLTENEALIRLGIDESGTVDQHFSWHLSVNPMTIKETKDSG
VLVLQVQHEAQPFLTATFISFLGDE*
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mRNA from alignment at M-pyrifera_M_contig114788:92..469+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114788.3071.1 ID=mRNA_M-pyrifera_M_contig114788.3071.1|Name=mRNA_M-pyrifera_M_contig114788.3071.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig114788:92..469+ (Macrocystis pyrifera P11B4 male)
ATGACAATCAGTGACAGCAAGAGTGATCCTGTTTCCGGCTTCACGCTGCT
CGAGACAATCGTCGCCTTCGTTATCATATCAATATCACTGGCCATCGCAG
TTCGAACTGTTAGCTTTAGCATCCACAATGCAGAGCGAACCCGAGTGGAA
ACTCAATTGCGCAATATTGCAAAGGTCGTCCTAACGGAAAACGAAGCTCT
TATAAGACTCGGAATTGATGAAAGTGGCACAGTCGATCAGCATTTCTCCT
GGCACTTGTCGGTCAACCCAATGACGATCAAGGAAACCAAAGACAGCGGC
GTGCTGGTACTGCAGGTCCAACATGAGGCACAACCATTCCTTACTGCGAC
CTTCATCAGTTTTTTGGGAGACGAATAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114788:92..469+

>mRNA_M-pyrifera_M_contig114788.3071.1 ID=mRNA_M-pyrifera_M_contig114788.3071.1|Name=mRNA_M-pyrifera_M_contig114788.3071.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig114788:92..469+ (Macrocystis pyrifera P11B4 male)
ATGACAATCAGTGACAGCAAGAGTGATCCTGTTTCCGGCTTCACGCTGCT
CGAGACAATCGTCGCCTTCGTTATCATATCAATATCACTGGCCATCGCAG
TTCGAACTGTTAGCTTTAGCATCCACAATGCAGAGCGAACCCGAGTGGAA
ACTCAATTGCGCAATATTGCAAAGGTCGTCCTAACGGAAAACGAAGCTCT
TATAAGACTCGGAATTGATGAAAGTGGCACAGTCGATCAGCATTTCTCCT
GGCACTTGTCGGTCAACCCAATGACGATCAAGGAAACCAAAGACAGCGGC
GTGCTGGTACTGCAGGTCCAACATGAGGCACAACCATTCCTTACTGCGAC
CTTCATCAGTTTTTTGGGAGACGAATAGATGACAATCAGTGACAGCAAGA
GTGATCCTGTTTCCGGCTTCACGCTGCTCGAGACAATCGTCGCCTTCGTT
ATCATATCAATATCACTGGCCATCGCAGTTCGAACTGTTAGCTTTAGCAT
CCACAATGCAGAGCGAACCCGAGTGGAAACTCAATTGCGCAATATTGCAA
AGGTCGTCCTAACGGAAAACGAAGCTCTTATAAGACTCGGAATTGATGAA
AGTGGCACAGTCGATCAGCATTTCTCCTGGCACTTGTCGGTCAACCCAAT
GACGATCAAGGAAACCAAAGACAGCGGCGTGCTGGTACTGCAGGTCCAAC
ATGAGGCACAACCATTCCTTACTGCGACCTTCATCAGTTTTTTGGGAGAC
GAATAG
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