mRNA_M-pyrifera_M_contig114462.3013.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114462.3013.1
Unique NamemRNA_M-pyrifera_M_contig114462.3013.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: A0A7M7NW33_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7NW33_STRPU)

HSP 1 Score: 91.7 bits (226), Expect = 8.090e-20
Identity = 46/87 (52.87%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDAL 264
            K+++E+E  EKRL  L++VRPAFMDEYE+LEG+LQ+QY+V++ER+RNL  +EH+L++Y R E++R  E   +L++MQ RL+Q++D +
Sbjct:  219 KKRSEMERNEKRLSTLQSVRPAFMDEYEKLEGDLQKQYEVFIERYRNLTYLEHQLDEYSRAEQDRFEETENSLKQMQSRLRQEDDRI 305
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BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: G1Q0T4_MYOLU (Uncharacterized protein n=2 Tax=Myotis lucifugus TaxID=59463 RepID=G1Q0T4_MYOLU)

HSP 1 Score: 86.7 bits (213), Expect = 2.180e-19
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDAL 264
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L
Sbjct:   21 KRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKRL 107
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BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: UPI00156C13D8 (clusterin-associated protein 1 isoform X4 n=1 Tax=Mirounga leonina TaxID=9715 RepID=UPI00156C13D8)

HSP 1 Score: 87.8 bits (216), Expect = 5.750e-19
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDALAR 270
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L R
Sbjct:   94 KRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKRLLR 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: A0A3Q7N4X9_CALUR (clusterin-associated protein 1 isoform X3 n=1 Tax=Callorhinus ursinus TaxID=34884 RepID=A0A3Q7N4X9_CALUR)

HSP 1 Score: 88.2 bits (217), Expect = 7.170e-19
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDALAR 270
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L R
Sbjct:  112 KRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRLEQERFEEAENTLRLMQNKLKEEEKRLLR 200
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: U6D5D4_NEOVI (Clusterin-associated protein 1 (Fragment) n=13 Tax=Mustelidae TaxID=9655 RepID=U6D5D4_NEOVI)

HSP 1 Score: 87.8 bits (216), Expect = 7.820e-19
Identity = 50/89 (56.18%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDALAR 270
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L R
Sbjct:  219 KRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKRLLR 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: A0A3Q7TBV9_VULVU (clusterin-associated protein 1 isoform X2 n=1 Tax=Vulpes vulpes TaxID=9627 RepID=A0A3Q7TBV9_VULVU)

HSP 1 Score: 89.0 bits (219), Expect = 8.550e-19
Identity = 51/89 (57.30%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDALAR 270
            KR+ ELE  +KRL+ L++VRPAFMDEYE++E ELQ+QYDVYLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L R
Sbjct:  256 KRKLELERNQKRLQTLQSVRPAFMDEYEKIEEELQKQYDVYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKRLLR 344
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: A0A7J8EXD6_ROUAE (Clusterin associated protein 1 n=2 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8EXD6_ROUAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.170e-18
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDAL 264
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L
Sbjct:   96 KRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRLEQERFEEAENTLRLMQNKLKEEEKRL 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: A0A7N5JZQ5_AILME (Clusterin associated protein 1 n=2 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5JZQ5_AILME)

HSP 1 Score: 88.6 bits (218), Expect = 1.200e-18
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDALAR 270
            KR+ ELE  +KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L R
Sbjct:  219 KRKLELERNQKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKRLLR 307
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: A0A5F9CUP7_RABIT (Clusterin associated protein 1 n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A5F9CUP7_RABIT)

HSP 1 Score: 86.3 bits (212), Expect = 1.240e-18
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDAL 264
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ +LK++E  L
Sbjct:   56 KRKLELERNRKRLQSLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQSKLKEEERRL 142
[Close]
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Match: UPI001FF3F2E6 (clusterin-associated protein 1 isoform X4 n=3 Tax=Felidae TaxID=9681 RepID=UPI001FF3F2E6)

HSP 1 Score: 86.7 bits (213), Expect = 1.260e-18
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:    4 KRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLHAMEHELEKYERIERERAAENSKALRRMQDRLKQKEDAL 264
            KR+ ELE   KRL+ L++VRPAFMDEYE++E ELQ+QYD+YLE+FRNL  +E +LE + R+E+ER  E    LR MQ++LK++E  L
Sbjct:   79 KRKLELERNRKRLQTLQSVRPAFMDEYEKIEEELQKQYDIYLEKFRNLAYLEQQLEDHHRMEQERFEEAENTLRLMQNKLKEEEKRL 165
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114462.3013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7M7NW33_STRPU8.090e-2052.87Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]
G1Q0T4_MYOLU2.180e-1956.32Uncharacterized protein n=2 Tax=Myotis lucifugus T... [more]
UPI00156C13D85.750e-1956.18clusterin-associated protein 1 isoform X4 n=1 Tax=... [more]
A0A3Q7N4X9_CALUR7.170e-1956.18clusterin-associated protein 1 isoform X3 n=1 Tax=... [more]
U6D5D4_NEOVI7.820e-1956.18Clusterin-associated protein 1 (Fragment) n=13 Tax... [more]
A0A3Q7TBV9_VULVU8.550e-1957.30clusterin-associated protein 1 isoform X2 n=1 Tax=... [more]
A0A7J8EXD6_ROUAE1.170e-1856.32Clusterin associated protein 1 n=2 Tax=Rousettus a... [more]
A0A7N5JZQ5_AILME1.200e-1856.18Clusterin associated protein 1 n=2 Tax=Ailuropoda ... [more]
A0A5F9CUP7_RABIT1.240e-1856.32Clusterin associated protein 1 n=3 Tax=Boreoeuther... [more]
UPI001FF3F2E61.260e-1856.32clusterin-associated protein 1 isoform X4 n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114462contigM-pyrifera_M_contig114462:7..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score94.0
Seed ortholog evalue3.9e-17
Seed eggNOG ortholog7668.SPU_004248-tr
Preferred nameCLUAP1
KEGG koko:K19684
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0001655,GO:0001822,GO:0001838,GO:0001841,GO:0001843,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003002,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007418,GO:0007507,GO:0007610,GO:0007635,GO:0008150,GO:0009268,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010446,GO:0010970,GO:0014020,GO:0015630,GO:0016043,GO:0016331,GO:0021508,GO:0021915,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030424,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033504,GO:0033505,GO:0035050,GO:0035082,GO:0035148,GO:0035239,GO:0035295,GO:0035735,GO:0036477,GO:0040011,GO:0042073,GO:0042221,GO:0042330,GO:0042592,GO:0042995,GO:0043005,GO:0043009,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045494,GO:0046907,GO:0048513,GO:0048562,GO:0048568,GO:0048598,GO:0048646,GO:0048729,GO:0048731,GO:0048856,GO:0048871,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060249,GO:0060271,GO:0060429,GO:0060562,GO:0060606,GO:0060972,GO:0061371,GO:0065007,GO:0065008,GO:0070013,GO:0070925,GO:0071840,GO:0072001,GO:0072175,GO:0072359,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium assembly
EggNOG OGs39F96@33154,3BHA8@33208,3CZ70@33213,KOG3647@1,KOG3647@2759
COG Functional cat.K
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.8926342-CDS-M-pyrifera_M_contig114462:6..1791622815660.8926342-CDS-M-pyrifera_M_contig114462:6..179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114462 7..179 +
1692277509.7479212-CDS-M-pyrifera_M_contig114462:6..1791692277509.7479212-CDS-M-pyrifera_M_contig114462:6..179Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114462 7..179 +
1622815660.90496-CDS-M-pyrifera_M_contig114462:301..3981622815660.90496-CDS-M-pyrifera_M_contig114462:301..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114462 302..398 +
1692277509.7580209-CDS-M-pyrifera_M_contig114462:301..3981692277509.7580209-CDS-M-pyrifera_M_contig114462:301..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114462 302..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114462.3013.1prot_M-pyrifera_M_contig114462.3013.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114462 7..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114462.3013.1

>prot_M-pyrifera_M_contig114462.3013.1 ID=prot_M-pyrifera_M_contig114462.3013.1|Name=mRNA_M-pyrifera_M_contig114462.3013.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
KKRQAELENIEKRLKDLETVRPAFMDEYERLEGELQRQYDVYLERFRNLH
AMEHELEKYERIERERAAENSKALRRMQDRLKQKEDALAR
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mRNA from alignment at M-pyrifera_M_contig114462:7..398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114462.3013.1 ID=mRNA_M-pyrifera_M_contig114462.3013.1|Name=mRNA_M-pyrifera_M_contig114462.3013.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=392bp|location=Sequence derived from alignment at M-pyrifera_M_contig114462:7..398+ (Macrocystis pyrifera P11B4 male)
AAGAAGAGGCAGGCAGAGCTGGAGAACATTGAGAAGCGGCTGAAGGATTT
GGAGACGGTTCGTCCTGCGTTCATGGACGAGTATGAGCGGTTGGAGGGAG
AGCTGCAGCGGCAGTACGATGTGTATCTGGAACGGTTCCGCAATCTGCAC
GCCATGGAGCACGAGCTGGAGAAGTGCGTGGGGAGCGTGTGTGTGTGTTC
GTGTGTGTGTGTGTGTGTGCGTGCGCGCGCGCGCGCGTGTGTGTGTGTGC
ACTCCCGCGACCCACAAGCACTTTCTTACACGCACACGCGAGCAGGTACG
AGCGTATCGAGCGCGAGCGCGCCGCGGAGAACAGCAAGGCGCTTCGCCGC
ATGCAAGACAGGTTGAAGCAGAAGGAAGACGCTCTGGCACGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114462:7..398+

>mRNA_M-pyrifera_M_contig114462.3013.1 ID=mRNA_M-pyrifera_M_contig114462.3013.1|Name=mRNA_M-pyrifera_M_contig114462.3013.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig114462:7..398+ (Macrocystis pyrifera P11B4 male)
AAGAAGAGGCAGGCAGAGCTGGAGAACATTGAGAAGCGGCTGAAGGATTT
GGAGACGGTTCGTCCTGCGTTCATGGACGAGTATGAGCGGTTGGAGGGAG
AGCTGCAGCGGCAGTACGATGTGTATCTGGAACGGTTCCGCAATCTGCAC
GCCATGGAGCACGAGCTGGAGAAAAGAAGAGGCAGGCAGAGCTGGAGAAC
ATTGAGAAGCGGCTGAAGGATTTGGAGACGGTTCGTCCTGCGTTCATGGA
CGAGTATGAGCGGTTGGAGGGAGAGCTGCAGCGGCAGTACGATGTGTATC
TGGAACGGTTCCGCAATCTGCACGCCATGGAGCACGAGCTGGAGAAGTAC
GAGCGTATCGAGCGCGAGCGCGCCGCGGAGAACAGCAAGGCGCTTCGCCG
CATGCAAGACAGGTTGAAGCAGAAGGAAGACGCTCTGGCACGCGTACGAG
CGTATCGAGCGCGAGCGCGCCGCGGAGAACAGCAAGGCGCTTCGCCGCAT
GCAAGACAGGTTGAAGCAGAAGGAAGACGCTCTGGCACGC
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