mRNA_M-pyrifera_M_contig1144.3005.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A6H5L2V4_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2V4_9PHAE) HSP 1 Score: 233 bits (593), Expect = 2.250e-61 Identity = 251/644 (38.98%), Postives = 307/644 (47.67%), Query Frame = 1
Query: 217 LDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQGTLSDGLGAGMDDIDDGGDGETGGGSATPRPGG--------GNDGEADYDSFALDVVPGGGXXXGVCS-PAGRVGGPESPL---------------PPGAQKMRGVAXXXXXXXXXXXXXXXXXXXIEAGASPAVVPLSSFPLGASSASSSVEGLGRWQVRLSDEQPLMGQSVIGSLTRKETATLQTA---YEELNKKLEGNSKVGG-SARSIGIVSG--------TEDGDXXXXXXXXXXXXXXLAPPMCAAETQAPLQGKGQAPFERAASVHATSEPPPPLPAPASSVGSQGGCDSVTGKRTRPRLFVNTNVDP-GMYIG-HDPH--------------------------GSEGTNAASAXXXXXXXXXXXXXRVSHA---SSVPYGCPPPGMGSXXXXXXXXXXXXXXXYASGMGNVVNQPMAQMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDYPIAIPGTSVRRYMHVQLLLALMSAPGLKVVAPAKVSWDRLGYYPVDAVFGPPGPGPLPTSPPRLTPT--VLPPLPVTSPTLLADPDSPA----PPKRARSVKGP 1929
LDPS + PWTE+E I+HDA LRLG +RWA+IAKLLTGRT++ VK++W+ T K + +++ + G G G D D G S+T P G G YD DVVP G CS P G V G E L PP A +E+ + PA+VP S+ LG ++A ++V+ RWQV +++ ++ Q+ IGSLT+ E + A Y EL+KK+ G + G S G V G ++ + L P A T + L+ QA A +V T PPLPAPASSVGS+ + KR RPRLFVNTNVD GMYIG H+ G E +A + XXXXXXXXXXXX R HA S+VP+GCPP G+GS XXXXXXXXXXX D+PIAIPGTSVRRYMHVQLLLALMSAPGL+VV PA+VSWDRLGYYPVDAVFGPP PG P PPRLTPT +P +P SP DS A P KRARS GP
Sbjct: 2 LDPSQKNAPWTEEEITIIHDAHLRLG-NRWAEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNKE---IRGGGGDGGSDPSRSRDAGARG-SSTIDPIGPRGESVATNGGGPGFYDDPKPDVVPREAVIAGGCSAPVGHVEGGECQLQPVVAGLGVCGGIGPPPAMAVATAAAVATHGQGMPPVGAATAAPGVESPSPPALVPSSASTLG-TTAPAAVDENNRWQVSDDNKRGVVNQTAIGSLTKTEATDPRKAAACYGELDKKVAGENGDGSASTGDAGAVHGWHLATSAASDAVEEAPGHRKDGSCGVVLGPGGVAPATSSLLE---QASVVNAHAVSNTVTKSPPLPAPASSVGSRDRDQQIGSKRPRPRLFVNTNVDAAGMYIGGHEQQQHXXXXXXXXXXXXXXXXXXXXXXXXGFE-ADANAXXXXXXXXXXXXXARAPHAVSMSAVPFGCPP-GLGSSAAEXXXXXXXXXXXXXXXXXXXXG--------------------------------------------------GDHPIAIPGTSVRRYMHVQLLLALMSAPGLRVVTPARVSWDRLGYYPVDAVFGPPKPGARPPGPPRLTPTSTAIPTMPGLSPRSQFGSDSAAAALVPSKRARSGTGP 584
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: D7FNQ9_ECTSI (Transcription factor C-MYB n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ9_ECTSI) HSP 1 Score: 189 bits (480), Expect = 4.220e-47 Identity = 136/353 (38.53%), Postives = 184/353 (52.12%), Query Frame = 1
Query: 1 DGSHDEARLMHTRVGGQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQGTLSDGLGAGMDDIDDGGDGE-TGGGSATPRPGGG-----NDGEAD-YDSFALDVVPGGGXXXGVCS-PAGRVGGPESPL---------------PPGAQKMRGVAXXXXXXXXXXXXXXXXXXXIEAGASPAVVPLSSFPLGASSASSSVEGLGRWQVRLSDEQPLMGQSVIGSLTRKETATLQTA---YEELNKKLEGNSKVGG-SARSIGIVSG 978
+G DEA T +G + + RPWSR EDEAIARMV E G +WS +AGNL E+ G LRT K C RW H LDPS + PWTE+E+ I+HDA LRLG +RW++IAKLLTGRT++ VK++W+ T K + ++++ + G G G D GD E TG + P GG N G + YD D+VPG G CS P G V G E L PP A +E+ + PA+VP + LG ++A +V+G RWQV +++ ++ Q+ IGSLT+ E + A Y EL+KK+ G + G S G V G
Sbjct: 100 NGDGDEACGEDTHLGARAPDLRPWSRMEDEAIARMVVERGIKRWSVIAGNLYVEVAGTLRTGKQCKARWQHMLDPSQKNAPWTEEEENIIHDAHLRLG-NRWSEIAKLLTGRTDSAVKNYWYTTAHKNIGRQNME---IRGGDGDGRSDPSRSGDTEATGSSNINPIGPGGESVATNGGASGFYDDPKPDIVPGEAGIAGGCSAPVGHVEGGECQLQPVVAGLGVCGGIGPPPAMAVATAAAVATHGQGMPPVGAATAAPGVESSSPPALVPSLASTLG-TTAPPAVDGNNRWQVSDDNKRGVVSQTAIGSLTKTEATNPRKAAACYGELDKKVAGENGDGSASTGDAGAVHG 447
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA) HSP 1 Score: 147 bits (370), Expect = 6.520e-38 Identity = 65/110 (59.09%), Postives = 87/110 (79.09%), Query Frame = 1
Query: 58 ERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKM 387
ERR W+R EDEAI R+V E G +WS VA +L EI G +R+ K C TRW +HLDPSLR+EPWT +E+Q+++DAQ RLG ++WA+IAKLLTGRT+N +K+HW++T +K M
Sbjct: 1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLG-NKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA) HSP 1 Score: 145 bits (365), Expect = 3.650e-37 Identity = 60/113 (53.10%), Postives = 90/113 (79.65%), Query Frame = 1
Query: 58 ERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKK 396
ERR WS+ ED+AI+ +V G +WS +A NL E+ GA+R+ K C TRW +HLDPSLR +PWT++E+Q++++AQ RLG ++WA+IAKLLTGRT+N +K+HW++T +K M+++
Sbjct: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLG-NKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRR 112
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA) HSP 1 Score: 140 bits (354), Expect = 8.370e-33 Identity = 58/116 (50.00%), Postives = 88/116 (75.86%), Query Frame = 1
Query: 46 GQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKK 393
G+ ERR W+R ED+AI R+V GT +W+ +A L EIPG R+ K C TRW +HLDP++++EPW++ E+ I++DAQ RLG ++WA+IAKLL GRT+N +K+HW++T ++ M++
Sbjct: 45 GERPERRAWTRKEDDAIVRLVKRHGTKRWACIAQELNTEIPGVFRSGKQCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLG-NKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 159
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.080e-32 Identity = 66/147 (44.90%), Postives = 98/147 (66.67%), Query Frame = 1
Query: 19 ARLMHTRVGGQVT----ERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQGTLSDGLGAGMDD 447
A + T V VT ERR WSR ED+AI R+V GT +W+ +A L EI G R+ K C TRW +HLDP++++EPW+E E++I++DAQ RLG ++WA+IAKLL GRT+N +K+HW++T ++ M++ + +G G +D
Sbjct: 21 APVATTTVAEPVTVDRPERRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLG-NKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKEISMDDEGAEGGAED 166
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A3M6VGP6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VGP6_9STRA) HSP 1 Score: 140 bits (353), Expect = 8.900e-32 Identity = 63/131 (48.09%), Postives = 94/131 (71.76%), Query Frame = 1
Query: 16 EARLMHTRVGGQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQ 408
EARL G ERR W+R EDEAI R+V E GT +WS ++ +L +E G RT K C TRW +HLDP+++++PWT +E+QI+ DAQ RLG ++WA+I+KLL GRT+N +K+HW+++ ++ M++ + Q
Sbjct: 10 EARLN----SGSTYERRAWTRKEDEAIIRLVDEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLG-NKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQ 135
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A3F2RS30_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RS30_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.080e-31 Identity = 59/123 (47.97%), Postives = 90/123 (73.17%), Query Frame = 1
Query: 40 VGGQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQ 408
GG ERR W+R ED+AI R+V E GT +WS ++ +L E G RT K C TRW +HLDP+++++PWT +E+QI+ DAQ RLG ++WA+I+KLL GRT+N +K+HW+++ ++ M++ + Q
Sbjct: 21 AGGSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLG-NKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQ 142
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: A0A484E484_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E484_BRELC) HSP 1 Score: 139 bits (350), Expect = 1.850e-31 Identity = 59/123 (47.97%), Postives = 91/123 (73.98%), Query Frame = 1
Query: 40 VGGQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQ 408
V G ERR W+R ED+AI R+V E GT +WS ++ +L +E G RT K C TRW +HLDP+++++PWT +E+QI+ DAQ RLG ++WA+I+KLL GRT+N +K+HW+++ ++ M++ + Q
Sbjct: 13 VRGSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLG-NKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQ 134
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Match: H3HDP9_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3HDP9_PHYRM) HSP 1 Score: 138 bits (348), Expect = 2.190e-31 Identity = 60/129 (46.51%), Postives = 93/129 (72.09%), Query Frame = 1
Query: 46 GQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALRTAKDCGTRWFHHLDPSLREEPWTEKEDQILHDAQLRLGGDRWADIAKLLTGRTENCVKSHWHATFQKKMKKKSVPQG-TLSDGL 429
G ERR W+R ED+AI R+V E GT +WS ++ +L E G RT K C TRW +HLDP+++++PWT +E+Q++ DAQ RLG ++WA+I+KLL GRT+N +K+HW+++ ++ M++ + Q TL G+
Sbjct: 15 GSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQVIEDAQTRLG-NKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQQNKTLGQGV 142 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1144.3005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig1144.3005.1 >prot_M-pyrifera_M_contig1144.3005.1 ID=prot_M-pyrifera_M_contig1144.3005.1|Name=mRNA_M-pyrifera_M_contig1144.3005.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=725bp MHTRVGGQVTERRPWSRSEDEAIARMVGELGTDQWSSVAGNLCAEIPGALback to top mRNA from alignment at M-pyrifera_M_contig1144:19574..25588- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig1144.3005.1 ID=mRNA_M-pyrifera_M_contig1144.3005.1|Name=mRNA_M-pyrifera_M_contig1144.3005.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6015bp|location=Sequence derived from alignment at M-pyrifera_M_contig1144:19574..25588- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig1144:19574..25588- >mRNA_M-pyrifera_M_contig1144.3005.1 ID=mRNA_M-pyrifera_M_contig1144.3005.1|Name=mRNA_M-pyrifera_M_contig1144.3005.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=4350bp|location=Sequence derived from alignment at M-pyrifera_M_contig1144:19574..25588- (Macrocystis pyrifera P11B4 male)back to top |