mRNA_M-pyrifera_M_contig114332.2990.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114332.2990.1
Unique NamemRNA_M-pyrifera_M_contig114332.2990.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A0C9Y3A6_9AGAR (Unplaced genomic scaffold K443scaffold_33, whole genome shotgun sequence n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9Y3A6_9AGAR)

HSP 1 Score: 90.5 bits (223), Expect = 6.280e-19
Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T LSF    H LS    GTLC++   +WA+L ++ G H+G V S+AVHPS + ALSV +D  + +WDL RGK    TK+   G    V WS  GS FAV
Sbjct:  173 GSITHLSFPSRSHLLSASEDGTLCLFRARDWAVLRSLKG-HKGRVNSVAVHPSGKVALSVGKDRALRMWDLMRGKGCASTKLGKEG--EIVRWSVDGSLFAV 271
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: UPI001C035390 (WD40-repeat-containing domain protein n=1 Tax=Suillus subaureus TaxID=48587 RepID=UPI001C035390)

HSP 1 Score: 90.9 bits (224), Expect = 8.870e-19
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T L F    H LS    GTLC++   +W +L A+ G H+G V S+AVHPSN+ ALSV  D  + +WDL RGK +  TK+   G    V WS  GS F V
Sbjct:  138 GSITQLHFPSRSHLLSASEDGTLCLFRARDWVVLRALKG-HKGRVNSMAVHPSNKVALSVGNDNTLRMWDLMRGKGSASTKLGKEG--EVVRWSTTGSSFVV 236
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A0C2YTS1_HEBCY (Uncharacterized protein n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C2YTS1_HEBCY)

HSP 1 Score: 90.1 bits (222), Expect = 9.180e-19
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T L F    H LS    GTLC++   +WA+L ++ G H+G V S+AVHPS + ALSV +D  + +WDL RGK    TK+   G    V WS  GS+FAV
Sbjct:  177 GSITHLLFPSRSHLLSASEDGTLCLFRARDWAVLRSLKG-HKGRVNSVAVHPSGKVALSVGKDRALRMWDLMRGKGVASTKLGKEG--EIVRWSSDGSKFAV 275
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A8H6TFH4_9AGAR (Glycosyltransferase family 39 protein n=1 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6TFH4_9AGAR)

HSP 1 Score: 89.7 bits (221), Expect = 2.430e-18
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T L+F    H LS    GTLC++   +WA+L A+ G H+G V S+AVHPS + ALSV +D  + +WDL RGK    TK+        V WSP G+ F V
Sbjct:  136 GSITHLNFPSRSHLLSASEDGTLCLFRARDWAVLRALRG-HKGRVNSVAVHPSGKVALSVGKDRTLRMWDLMRGKGCASTKLGKEA--ELVRWSPSGTLFVV 234
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: W4JYU1_HETIT (Uncharacterized protein (Fragment) n=1 Tax=Heterobasidion irregulare (strain TC 32-1) TaxID=747525 RepID=W4JYU1_HETIT)

HSP 1 Score: 89.7 bits (221), Expect = 2.490e-18
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G VT LSF    H LS    GTLC++   +W++L A+ G H+G V S+AVHPS + ALSV +D  + +WDL RG+ +  TK+ V G    V WS  GS   V
Sbjct:  139 GSVTHLSFPSRSHLLSASEDGTLCLFRARDWSVLRALKG-HKGPVNSVAVHPSGKVALSVGKDKTLRMWDLMRGRASGSTKLGVEG--ELVRWSTSGSLLVV 237
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A8H5D0E6_9AGAR (Uncharacterized protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5D0E6_9AGAR)

HSP 1 Score: 89.7 bits (221), Expect = 2.730e-18
Identity = 45/108 (41.67%), Postives = 62/108 (57.41%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAVVGEGGV 327
            G +T+L F    H +S    GTLC++   +WA+L A+ G H+G V S+AVHPS + ALSV +D  + +WDL RG+    TK+   G    V WS  GS F V    G+
Sbjct:  152 GSITSLHFPSRSHLISASEDGTLCLFHARDWAVLRALKG-HKGRVNSVAVHPSGKVALSVGKDRTLRMWDLMRGRGVASTKIGKEG--EVVRWSTDGSLFIVQSGSGI 256
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A0C3BUH7_PILCF (Uncharacterized protein n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3BUH7_PILCF)

HSP 1 Score: 89.0 bits (219), Expect = 3.090e-18
Identity = 45/102 (44.12%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T LSF    H LS    GTLC++   +WA+L ++ G H+G V S+AVHPS + ALSV +D  + +WDL RGK +  TK+   G    V W+  GS F V
Sbjct:  166 GSITHLSFPSRSHLLSASEDGTLCLFRARDWAVLRSLHG-HKGRVNSVAVHPSGKVALSVGKDRTLRMWDLMRGKGSASTKLGKEG--ELVRWNNSGSLFVV 264
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A0D0D956_9AGAM (Uncharacterized protein n=1 Tax=Paxillus rubicundulus Ve08.2h10 TaxID=930991 RepID=A0A0D0D956_9AGAM)

HSP 1 Score: 89.4 bits (220), Expect = 3.430e-18
Identity = 45/108 (41.67%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAVVGEGGV 327
            G +T L F    H LS    GTLC++   +W +L ++ G H+G V S+AVHPS + ALSV +D V+ +WDL RGK +  TK++  G    V WS  GS F V  +  +
Sbjct:  153 GSITYLQFPSRSHLLSASEDGTLCLFHARDWTVLRSLKG-HKGRVNSVAVHPSGKVALSVGQDKVLRMWDLMRGKGSASTKLAKEG--EVVRWSITGSSFVVQSQSSI 257
[Close]
BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: F8P2V7_SERL9 (WD40 repeat-containing protein n=2 Tax=Serpula lacrymans var. lacrymans TaxID=341189 RepID=F8P2V7_SERL9)

HSP 1 Score: 89.4 bits (220), Expect = 3.660e-18
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T L F    H LS    GTLC++   +WA+L ++ G H+G+V S+A+HPS + ALSV +D  + +WDL RGK +  TK+   G    V WS  GS F V
Sbjct:  160 GSITELQFPSRSHLLSSSEDGTLCLFRARDWAVLRSLKG-HKGAVNSVAIHPSGKVALSVGKDKTLRMWDLMRGKGSASTKLGKEG--ELVRWSVTGSCFVV 258
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BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Match: A0A286UKP7_9AGAM (WD40 domain containing protein n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UKP7_9AGAM)

HSP 1 Score: 89.4 bits (220), Expect = 3.920e-18
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 1 
Query:    4 GDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIAVHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSRFAV 309
            G +T LSF    H +S    GT+CI+   +W+LL ++ G H+G V S+AVHPS++ ALSV +D  + +WDL RGK +  TK+   G    V WS  G+RF V
Sbjct:  194 GSITHLSFPTRSHLISASEDGTICIFRARDWSLLRSMKG-HKGRVNSVAVHPSSKIALSVGKDRTLRMWDLMRGKGSASTKLGKEG--ELVRWSTEGNRFVV 292
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114332.2990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C9Y3A6_9AGAR6.280e-1946.08Unplaced genomic scaffold K443scaffold_33, whole g... [more]
UPI001C0353908.870e-1945.10WD40-repeat-containing domain protein n=1 Tax=Suil... [more]
A0A0C2YTS1_HEBCY9.180e-1945.10Uncharacterized protein n=1 Tax=Hebeloma cylindros... [more]
A0A8H6TFH4_9AGAR2.430e-1844.12Glycosyltransferase family 39 protein n=1 Tax=Myce... [more]
W4JYU1_HETIT2.490e-1845.10Uncharacterized protein (Fragment) n=1 Tax=Heterob... [more]
A0A8H5D0E6_9AGAR2.730e-1841.67Uncharacterized protein n=1 Tax=Tetrapyrgos nigrip... [more]
A0A0C3BUH7_PILCF3.090e-1844.12Uncharacterized protein n=1 Tax=Piloderma croceum ... [more]
A0A0D0D956_9AGAM3.430e-1841.67Uncharacterized protein n=1 Tax=Paxillus rubicundu... [more]
F8P2V7_SERL93.660e-1843.14WD40 repeat-containing protein n=2 Tax=Serpula lac... [more]
A0A286UKP7_9AGAM3.920e-1844.12WD40 domain containing protein n=1 Tax=Pyrrhoderma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114332contigM-pyrifera_M_contig114332:2..412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue9.1e-18
Seed eggNOG ortholog157072.XP_008862213.1
Preferred namePAK1IP1
KEGG koko:K11684,ko:K14830,ko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006469,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008283,GO:0009892,GO:0009966,GO:0009987,GO:0010467,GO:0010563,GO:0010605,GO:0010646,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030234,GO:0030684,GO:0030685,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032502,GO:0032886,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033673,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0042325,GO:0042326,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043549,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045859,GO:0045936,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051493,GO:0060021,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070507,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0098772,GO:1901360,GO:1901796,GO:1902531,GO:1990904
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsKOG0294@1,KOG0294@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.8489528-CDS-M-pyrifera_M_contig114332:1..4121622815659.8489528-CDS-M-pyrifera_M_contig114332:1..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114332 2..412 -
1692277509.3309097-CDS-M-pyrifera_M_contig114332:1..4121692277509.3309097-CDS-M-pyrifera_M_contig114332:1..412Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114332 2..412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114332.2990.1prot_M-pyrifera_M_contig114332.2990.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114332 2..412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114332.2990.1

>prot_M-pyrifera_M_contig114332.2990.1 ID=prot_M-pyrifera_M_contig114332.2990.1|Name=mRNA_M-pyrifera_M_contig114332.2990.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
TGDVTALSFAGGGHALSGDSQGTLCIWSCGEWALLHAIPGAHEGSVESIA
VHPSNRAALSVDRDGVVALWDLTRGKKATETKVSVRGLCRKVVWSPCGSR
FAVVGEGGVVVVGARSSKEQGRLETSVPVHDAQWLTS
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mRNA from alignment at M-pyrifera_M_contig114332:2..412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114332.2990.1 ID=mRNA_M-pyrifera_M_contig114332.2990.1|Name=mRNA_M-pyrifera_M_contig114332.2990.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig114332:2..412- (Macrocystis pyrifera P11B4 male)
ACAGGTGACGTAACTGCGTTGAGTTTTGCTGGTGGTGGACATGCATTGTC
TGGAGATAGTCAAGGAACATTGTGTATTTGGAGTTGTGGAGAATGGGCGT
TGTTGCATGCAATTCCTGGGGCACACGAGGGCAGCGTGGAGAGTATTGCG
GTACATCCTTCGAATCGTGCTGCATTGAGTGTGGACAGGGATGGGGTGGT
GGCTTTGTGGGACTTGACGAGGGGCAAGAAGGCAACGGAGACCAAAGTGA
GTGTGCGAGGATTGTGTCGAAAAGTGGTGTGGAGTCCGTGTGGCTCTCGC
TTTGCCGTGGTTGGAGAAGGTGGGGTTGTTGTGGTTGGGGCACGGAGTTC
AAAAGAACAGGGAAGGCTGGAAACGTCTGTGCCTGTGCACGATGCACAAT
GGCTCACTTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114332:2..412-

>mRNA_M-pyrifera_M_contig114332.2990.1 ID=mRNA_M-pyrifera_M_contig114332.2990.1|Name=mRNA_M-pyrifera_M_contig114332.2990.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig114332:2..412- (Macrocystis pyrifera P11B4 male)
ACAGGTGACGTAACTGCGTTGAGTTTTGCTGGTGGTGGACATGCATTGTC
TGGAGATAGTCAAGGAACATTGTGTATTTGGAGTTGTGGAGAATGGGCGT
TGTTGCATGCAATTCCTGGGGCACACGAGGGCAGCGTGGAGAGTATTGCG
GTACATCCTTCGAATCGTGCTGCATTGAGTGTGGACAGGGATGGGGTGGT
GGCTTTGTGGGACTTGACGAGGGGCAAGAAGGCAACGGAGACCAAAGTGA
GTGTGCGAGGATTGTGTCGAAAAGTGGTGTGGAGTCCGTGTGGCTCTCGC
TTTGCCGTGGTTGGAGAAGGTGGGGTTGTTGTGGTTGGGGCACGGAGTTC
AAAAGAACAGGGAAGGCTGGAAACGTCTGTGCCTGTGCACGATGCACAAT
GGCTCACTTCCACAGGTGACGTAACTGCGTTGAGTTTTGCTGGTGGTGGA
CATGCATTGTCTGGAGATAGTCAAGGAACATTGTGTATTTGGAGTTGTGG
AGAATGGGCGTTGTTGCATGCAATTCCTGGGGCACACGAGGGCAGCGTGG
AGAGTATTGCGGTACATCCTTCGAATCGTGCTGCATTGAGTGTGGACAGG
GATGGGGTGGTGGCTTTGTGGGACTTGACGAGGGGCAAGAAGGCAACGGA
GACCAAAGTGAGTGTGCGAGGATTGTGTCGAAAAGTGGTGTGGAGTCCGT
GTGGCTCTCGCTTTGCCGTGGTTGGAGAAGGTGGGGTTGTTGTGGTTGGG
GCACGGAGTTCAAAAGAACAGGGAAGGCTGGAAACGTCTGTGCCTGTGCA
CGATGCACAATGGCTCACTTCC
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