mRNA_M-pyrifera_M_contig11432.2987.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11432.2987.1
Unique NamemRNA_M-pyrifera_M_contig11432.2987.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A7S2F148_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F148_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.610e-32
Identity = 53/85 (62.35%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW QYL ER + ++GKC+T    QIVVN  ERALVHLHKMPR+W+DY + ++ L  G+ +RRTFDRALQALP+TQHD++
Sbjct:   35 LPRSYKLWRQYLSERTSELKGKCITSKRYQIVVNTFERALVHLHKMPRIWLDYCSLLMHLKRGSLTRRTFDRALQALPVTQHDRI 119
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BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: I6M4B7_KRYMA (XAB2 (Fragment) n=1 Tax=Kryptolebias marmoratus TaxID=37003 RepID=I6M4B7_KRYMA)

HSP 1 Score: 116 bits (291), Expect = 1.020e-31
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKC+T+PA + V N HERALV +HKMPR+W+DY  F+V     TRSRRTFDRAL+ALP+TQH ++
Sbjct:   56 LPGSYKLWYNYLRERRKQVKGKCITEPAFEEVNNCHERALVVMHKMPRIWIDYCQFLVSQSKITRSRRTFDRALRALPVTQHPRI 140
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BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A0S7LQ32_9TELE (SYF1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LQ32_9TELE)

HSP 1 Score: 117 bits (293), Expect = 2.590e-31
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKC+TDP  + V N HERALV +HKMPR+W+DY  FVV     TRSRRTFDRAL+ALP+TQH ++
Sbjct:   89 LPGSYKLWYNYLRERRKQVKGKCITDPTYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCKITRSRRTFDRALRALPVTQHPRI 173
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BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A7S2W251_9STRA (Glycine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.950e-30
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW QYL ER+A ++GK VTD    I+VN +ERALVHLHKMPR+W+DY   ++ L  GTR+RRTFDRALQALP+TQHD++
Sbjct:   55 LPRSYKLWRQYLQERQAQIKGKSVTDKRNTILVNTYERALVHLHKMPRIWLDYCELLMNLQRGTRTRRTFDRALQALPVTQHDRI 139
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BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A8C1DYQ7_CYPCA (XPA binding protein 2 n=3 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1DYQ7_CYPCA)

HSP 1 Score: 118 bits (295), Expect = 2.490e-29
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKCVTDPA + V N HERALV +HKMPR+W+DY  F+V     TRSRRTFDRAL+ALPITQH ++
Sbjct:   62 LPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRVWIDYCQFMVSQCKITRSRRTFDRALRALPITQHPRI 146
[Close]
BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A087X627_POEFO (XPA binding protein 2 n=1 Tax=Poecilia formosa TaxID=48698 RepID=A0A087X627_POEFO)

HSP 1 Score: 119 bits (297), Expect = 2.590e-29
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKC+TDPA + V N HERALV +HKMPR+W+DY  FVV     TRSRRTFDRAL+ALP+TQH ++
Sbjct:   59 LPGSYKLWYNYLRERRKQVKGKCITDPAYEEVNNCHERALVFMHKMPRIWIDYCQFVVSQCKITRSRRTFDRALRALPVTQHPRI 143
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BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A8B9H3R0_ASTMX (XPA binding protein 2 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9H3R0_ASTMX)

HSP 1 Score: 118 bits (296), Expect = 3.490e-29
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKCVTDPA + + N HERALV +HKMPR+W+DY  F+V     TRSRRTFDRAL+ALPITQH ++
Sbjct:   55 LPGSYKLWYNYLRERRKQVKGKCVTDPAYEEINNCHERALVFMHKMPRIWLDYCQFIVSQCKITRSRRTFDRALRALPITQHSRI 139
[Close]
BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A498N3W7_LABRO (Pre-mRNA-splicing factor SYF1 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498N3W7_LABRO)

HSP 1 Score: 118 bits (296), Expect = 3.580e-29
Identity = 56/85 (65.88%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKCVTDPA + V N HERALV +HKMPR+W+DY  F+V     TRSRRTFDRAL+ALPITQH ++
Sbjct:  601 LPGSYKLWYNYLRERRKQVKGKCVTDPAYEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCKITRSRRTFDRALRALPITQHPRI 685
[Close]
BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: A0A4W4H7T8_ELEEL (XPA binding protein 2 n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4H7T8_ELEEL)

HSP 1 Score: 118 bits (295), Expect = 4.810e-29
Identity = 55/85 (64.71%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  V+GKCVTDPA + + N HERALV +HKMPR+W+DY  F+V     TRSRRTFDRAL+ALPITQH ++
Sbjct:   59 LPGSYKLWYNYLRERRKQVKGKCVTDPAYEEINNCHERALVFMHKMPRIWLDYCQFMVSQRKITRSRRTFDRALRALPITQHSRI 143
[Close]
BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Match: W5UE93_ICTPU (Pre-mRNA-splicing factor SYF1 n=2 Tax=Ictaluridae TaxID=7996 RepID=W5UE93_ICTPU)

HSP 1 Score: 118 bits (295), Expect = 4.810e-29
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1 
Query:    1 LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLWVDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV 255
            L  SYKLW  YL ERR  ++GKCVTDPA + V N HERALV +HKMPR+W+DY  F+V     TRSRRTFDRAL+ALP+TQH ++
Sbjct:   59 LPGSYKLWYNYLRERRKQIKGKCVTDPAYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQCKITRSRRTFDRALRALPVTQHSRI 143
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11432.2987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2F148_9STRA1.610e-3262.35Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
I6M4B7_KRYMA1.020e-3162.35XAB2 (Fragment) n=1 Tax=Kryptolebias marmoratus Ta... [more]
A0A0S7LQ32_9TELE2.590e-3163.53SYF1 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A7S2W251_9STRA2.950e-3064.71Glycine--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
A0A8C1DYQ7_CYPCA2.490e-2965.88XPA binding protein 2 n=3 Tax=Cyprinus carpio TaxI... [more]
A0A087X627_POEFO2.590e-2964.71XPA binding protein 2 n=1 Tax=Poecilia formosa Tax... [more]
A0A8B9H3R0_ASTMX3.490e-2964.71XPA binding protein 2 n=1 Tax=Astyanax mexicanus T... [more]
A0A498N3W7_LABRO3.580e-2965.88Pre-mRNA-splicing factor SYF1 n=1 Tax=Labeo rohita... [more]
A0A4W4H7T8_ELEEL4.810e-2964.71XPA binding protein 2 n=1 Tax=Electrophorus electr... [more]
W5UE93_ICTPU4.810e-2963.53Pre-mRNA-splicing factor SYF1 n=2 Tax=Ictaluridae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11432contigM-pyrifera_M_contig11432:8005..9131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score120.2
Seed ortholog evalue4.8e-25
Seed eggNOG ortholog48698.ENSPFOP00000001230
Preferred nameXAB2
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001655,GO:0001701,GO:0001709,GO:0001824,GO:0002009,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007442,GO:0007443,GO:0007507,GO:0007510,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0010002,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0021537,GO:0021543,GO:0021987,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030900,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035051,GO:0035239,GO:0035295,GO:0042684,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045165,GO:0046483,GO:0048513,GO:0048546,GO:0048565,GO:0048598,GO:0048619,GO:0048729,GO:0048731,GO:0048856,GO:0048863,GO:0048869,GO:0050896,GO:0051716,GO:0055123,GO:0060322,GO:0060429,GO:0060562,GO:0060911,GO:0060913,GO:0061326,GO:0061333,GO:0061525,GO:0065003,GO:0070013,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0072001,GO:0072002,GO:0072359,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.XPA binding protein 2
EggNOG OGs38FF1@33154,3BE39@33208,3CX5M@33213,489PS@7711,48XF7@7742,49S25@7898,KOG2047@1,KOG2047@2759
COG Functional cat.A
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Exons2
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.7175498-CDS-M-pyrifera_M_contig11432:8004..81241622815659.7175498-CDS-M-pyrifera_M_contig11432:8004..8124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11432 8005..8124 +
1692277509.2737472-CDS-M-pyrifera_M_contig11432:8004..81241692277509.2737472-CDS-M-pyrifera_M_contig11432:8004..8124Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11432 8005..8124 +
1622815659.7268815-CDS-M-pyrifera_M_contig11432:8996..91311622815659.7268815-CDS-M-pyrifera_M_contig11432:8996..9131Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11432 8997..9131 +
1692277509.2853994-CDS-M-pyrifera_M_contig11432:8996..91311692277509.2853994-CDS-M-pyrifera_M_contig11432:8996..9131Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11432 8997..9131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11432.2987.1prot_M-pyrifera_M_contig11432.2987.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11432 8005..9131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11432.2987.1

>prot_M-pyrifera_M_contig11432.2987.1 ID=prot_M-pyrifera_M_contig11432.2987.1|Name=mRNA_M-pyrifera_M_contig11432.2987.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
LSASYKLWNQYLGERRAAVEGKCVTDPACQIVVNAHERALVHLHKMPRLW
VDYLTFVVGLGLGTRSRRTFDRALQALPITQHDKV
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mRNA from alignment at M-pyrifera_M_contig11432:8005..9131+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11432.2987.1 ID=mRNA_M-pyrifera_M_contig11432.2987.1|Name=mRNA_M-pyrifera_M_contig11432.2987.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1127bp|location=Sequence derived from alignment at M-pyrifera_M_contig11432:8005..9131+ (Macrocystis pyrifera P11B4 male)
TTATCGGCCAGTTACAAGCTCTGGAACCAGTACTTGGGGGAGAGGAGGGC
GGCCGTGGAGGGGAAGTGCGTCACGGATCCTGCGTGCCAGATCGTGGTTA
ACGCCCATGAACGAGCGCTGGTGAGTCAGAGGGGAGAGGGGGGGGGGGGA
GGAGAGGGAAGGAGGGAGGGGGGTGGGGGGAAAAGGAGGGACTTCAGGTT
CGGGAAAACATGGATCCAGGGAGACTGCGTCGCGAGGTTTTGTTATTCGT
TGCGGCGTTACCGTTGAGATTATCACCGGAATTCAATCTCTGTTCCTAGT
TTTTCTCGATTAAAAGTCTCACCAGGAGATATCGATAACCGTAACGTACA
CGGTAGTGACAACGGAAACGGTATCAATGATGGTAACGGTGGAGGTAGTG
GTAGCGATACTGGTGGCGGTAGCGGCAACGATAAACGGCAAAGGCCTAAC
GGTAACGCTAACGTGACTCCACTAATACCGGTGTTCAAACCTTCTTTTTT
TGTGTGTGTGTGTGTTTTCGCGAAGATAACCCGCTGGGGGAGTTCGCAGG
ATGGCGATAGCGGTAACAGGAATGGCAAACGGTTCTAACATAGTAACAAT
GATGGTGACGGTAGCAGTAATGGTAGCGGTACTGGCAACGGTAACCGCAC
CGGTGAGTTATAGTAAAACGTTAAACCTTAAACGGTAACGGTAACGACAA
CCCGGTACCGGTACCGGCTATGGTAACTGTAACGGTTATATGGTAACCGG
GACCCGGTACCGGTACTAGTACCGGCAACGGCAGCGGTAACCACAAGGGC
AGCGGAAATTGTAACTGTAACTGTAACCGTAACGGTGACGGCAACCGTAA
CGGCCATCAACGGTAACGGAAACGGTATCCGTAACGGCAACTGTAACTGT
AACTGTAACGGTAACCGTAAGTGCAACGTTAACTGCAACCGTAGCGGTAA
TGGTGACCGAACCCCCACGCCGTTCGCGTTCGCTCGAGATAGGTCCACCT
TCACAAGATGCCGCGGCTGTGGGTGGACTACCTGACGTTTGTGGTAGGGC
TCGGCCTTGGCACCCGCTCTCGTAGGACGTTTGACCGCGCCCTGCAAGCT
CTGCCCATCACTCAACACGACAAGGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11432:8005..9131+

>mRNA_M-pyrifera_M_contig11432.2987.1 ID=mRNA_M-pyrifera_M_contig11432.2987.1|Name=mRNA_M-pyrifera_M_contig11432.2987.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig11432:8005..9131+ (Macrocystis pyrifera P11B4 male)
TTATCGGCCAGTTACAAGCTCTGGAACCAGTACTTGGGGGAGAGGAGGGC
GGCCGTGGAGGGGAAGTGCGTCACGGATCCTGCGTGCCAGATCGTGGTTA
ACGCCCATGAACGAGCGCTGTTATCGGCCAGTTACAAGCTCTGGAACCAG
TACTTGGGGGAGAGGAGGGCGGCCGTGGAGGGGAAGTGCGTCACGGATCC
TGCGTGCCAGATCGTGGTTAACGCCCATGAACGAGCGCTGGTCCACCTTC
ACAAGATGCCGCGGCTGTGGGTGGACTACCTGACGTTTGTGGTAGGGCTC
GGCCTTGGCACCCGCTCTCGTAGGACGTTTGACCGCGCCCTGCAAGCTCT
GCCCATCACTCAACACGACAAGGTAGTCCACCTTCACAAGATGCCGCGGC
TGTGGGTGGACTACCTGACGTTTGTGGTAGGGCTCGGCCTTGGCACCCGC
TCTCGTAGGACGTTTGACCGCGCCCTGCAAGCTCTGCCCATCACTCAACA
CGACAAGGTA
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