mRNA_M-pyrifera_M_contig114293.2976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114293.2976.1
Unique NamemRNA_M-pyrifera_M_contig114293.2976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A7S3PMV4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMV4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.690e-28
Identity = 51/75 (68.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:    7 TFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            TFKR+AP+A+R I+ F EK MGT DVR+DS+LNK+VW +GVRN+P RVRVR+ R+ NEDEDA EKLYT+V  VEV
Sbjct:   29 TFKRKAPRAVREIKKFAEKAMGTKDVRIDSKLNKFVWSKGVRNVPHRVRVRLSRKRNEDEDAKEKLYTLVQHVEV 103
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A6G0XFA6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XFA6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.300e-27
Identity = 51/76 (67.11%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 STFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            +TFK++APKA+R I+ F +K MGTSDVR+DS+LNK+VW +GVRNIP RVRVR+ R+ NEDEDA EKLYT+V  V+V
Sbjct:   33 ATFKKKAPKAVREIKKFAQKAMGTSDVRIDSKLNKFVWSQGVRNIPYRVRVRLSRKRNEDEDAKEKLYTLVQHVQV 108
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A6A5AE97_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AE97_9STRA)

HSP 1 Score: 103 bits (257), Expect = 4.210e-27
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    7 TFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            TFK++APKA+R I+ F +K MGT+DVR+DS+LNK+VW +GVRNIP RVRVR+ R+ NEDEDA EKLYT+V  V+V
Sbjct:   20 TFKKKAPKAVREIKKFAQKAMGTADVRIDSKLNKFVWSQGVRNIPYRVRVRLSRKRNEDEDAKEKLYTLVQHVQV 94
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A6A4QHW7_LUPAL (Putative ribosomal protein L31e n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4QHW7_LUPAL)

HSP 1 Score: 103 bits (256), Expect = 4.360e-27
Identity = 47/76 (61.84%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    4 STFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            STFK++APKAI+ IR F +K MGT+DVR+D +LNKYVW +G+R++PRR+RVR+ R+ N+DEDA E+LY++V+VVE+
Sbjct:    4 STFKKKAPKAIKEIRKFAQKSMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEI 79
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A485KQV6_9STRA (Aste57867_10627 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQV6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.740e-27
Identity = 50/76 (65.79%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 STFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            STFK++APKA+R I+ F +K MGT+DVR+D++LNK+VW +GVRNIP RVRVR+ R+ NEDEDA EKLYT+V  V+V
Sbjct:   48 STFKKKAPKAVREIKKFAQKAMGTADVRIDAKLNKFVWSQGVRNIPYRVRVRLSRKRNEDEDAKEKLYTLVQHVQV 123
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A371H2R7_MUCPR (60S ribosomal protein L31 n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371H2R7_MUCPR)

HSP 1 Score: 103 bits (258), Expect = 1.230e-26
Identity = 47/77 (61.04%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 YSTFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            Y TFK++APKAI+ IR F +K MGT+DVR+D +LNKYVW +G+R++PRR+RVR+ R+ N+DEDA E+LY++V+VVE+
Sbjct:   36 YDTFKKKAPKAIKEIRKFAQKAMGTNDVRVDVKLNKYVWSQGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVVEI 112
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A6U1KMU7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1KMU7_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.210e-26
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:    7 TFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            TFKR+AP+AIR I+ F EK M TSDVR+D++LNK+VW +GVRN+P RVRVR+ R+ NEDE+A+EKLYT+V  VEV
Sbjct:   28 TFKRKAPRAIREIKKFAEKAMKTSDVRIDAKLNKHVWSKGVRNVPYRVRVRLSRKRNEDEEASEKLYTLVQHVEV 102
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: UPI000C9D5BAC (60S ribosomal protein L31-like n=1 Tax=Cucurbita pepo subsp. pepo TaxID=3664 RepID=UPI000C9D5BAC)

HSP 1 Score: 101 bits (251), Expect = 2.910e-26
Identity = 46/76 (60.53%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 STFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            STFK++APKAI+ IR F EK MGT DVR+D +LNK++W RG+R++PRR+RVR+ R+ N+DEDA E+LY++V+V E+
Sbjct:    9 STFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI 84
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A1Z5K115_FISSO (Large subunit ribosomal protein L31e n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K115_FISSO)

HSP 1 Score: 101 bits (252), Expect = 2.960e-26
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:   10 FKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            FKRRAP+A++ IRAF +K MGTSDVR+D+ LNK+VW  GV+N+P RVRVR+ R+ NEDEDA EKLYT+  +VEV
Sbjct:   28 FKRRAPRAMKEIRAFAQKAMGTSDVRIDAALNKFVWKSGVKNVPTRVRVRLSRKRNEDEDADEKLYTLAQLVEV 101
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BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Match: A0A7J9CVQ4_GOSGO (Uncharacterized protein (Fragment) n=4 Tax=Gossypium TaxID=3633 RepID=A0A7J9CVQ4_GOSGO)

HSP 1 Score: 101 bits (251), Expect = 2.990e-26
Identity = 46/76 (60.53%), Postives = 65/76 (85.53%), Query Frame = 1 
Query:    4 STFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRVRVRMERRSNEDEDAAEKLYTIVSVVEV 231
            STFK++APKAI+ IR F EK MGT DVR+D +LNK++W RG+R++PRR+RVR+ R+ N+DEDA E+LY++V+V E+
Sbjct:   10 STFKKKAPKAIKEIRRFAEKAMGTKDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEI 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114293.2976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3PMV4_9STRA4.690e-2868.00Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A6G0XFA6_9STRA2.300e-2767.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A5AE97_9STRA4.210e-2766.67Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4QHW7_LUPAL4.360e-2761.84Putative ribosomal protein L31e n=2 Tax=Lupinus al... [more]
A0A485KQV6_9STRA6.740e-2765.79Aste57867_10627 protein n=1 Tax=Aphanomyces stella... [more]
A0A371H2R7_MUCPR1.230e-2661.0460S ribosomal protein L31 n=1 Tax=Mucuna pruriens ... [more]
A0A6U1KMU7_9STRA2.210e-2666.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI000C9D5BAC2.910e-2660.5360S ribosomal protein L31-like n=1 Tax=Cucurbita p... [more]
A0A1Z5K115_FISSO2.960e-2666.22Large subunit ribosomal protein L31e n=1 Tax=Fistu... [more]
A0A7J9CVQ4_GOSGO2.990e-2660.53Uncharacterized protein (Fragment) n=4 Tax=Gossypi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114293contigM-pyrifera_M_contig114293:125..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score104.4
Seed ortholog evalue2.5e-20
Seed eggNOG ortholog27923.ML358815a-PA
Preferred nameRPL31
KEGG koko:K02910
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categorymitochondrion
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGs3A3JD@33154,3BQAW@33208,COG2097@1,KOG0893@2759
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815659.0267482-CDS-M-pyrifera_M_contig114293:124..3251622815659.0267482-CDS-M-pyrifera_M_contig114293:124..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114293 125..325 +
1692277508.8863056-CDS-M-pyrifera_M_contig114293:124..3251692277508.8863056-CDS-M-pyrifera_M_contig114293:124..325Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114293 125..325 +
1622815659.0373201-CDS-M-pyrifera_M_contig114293:539..5691622815659.0373201-CDS-M-pyrifera_M_contig114293:539..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114293 540..569 +
1692277508.9015658-CDS-M-pyrifera_M_contig114293:539..5691692277508.9015658-CDS-M-pyrifera_M_contig114293:539..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114293 540..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114293.2976.1prot_M-pyrifera_M_contig114293.2976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114293 125..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114293.2976.1

>prot_M-pyrifera_M_contig114293.2976.1 ID=prot_M-pyrifera_M_contig114293.2976.1|Name=mRNA_M-pyrifera_M_contig114293.2976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
YSTFKRRAPKAIRAIRAFVEKEMGTSDVRLDSRLNKYVWHRGVRNIPRRV
RVRMERRSNEDEDAAEKLYTIVSVVEV
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mRNA from alignment at M-pyrifera_M_contig114293:125..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114293.2976.1 ID=mRNA_M-pyrifera_M_contig114293.2976.1|Name=mRNA_M-pyrifera_M_contig114293.2976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=445bp|location=Sequence derived from alignment at M-pyrifera_M_contig114293:125..569+ (Macrocystis pyrifera P11B4 male)
TACAGCACGTTCAAGCGCCGTGCCCCGAAGGCCATCCGCGCCATCCGCGC
GTTCGTGGAGAAGGAGATGGGCACGTCTGACGTGCGCCTCGACTCTCGCC
TCAACAAGTACGTGTGGCACCGTGGTGTCCGCAACATCCCCCGCCGCGTG
CGTGTCCGCATGGAGCGCCGCTCCAACGAGGATGAGGATGCTGCCGAGAA
GGTCCGTGTGTGCCCGCCTCGCCCTGCTTGCGCTGCCTGCATCTCCGCCC
ATGCTTTGTTGTTTTTCCGTGCACCTCGTACACCGCCCTTGCCGCCTCTC
TCTGTCCCGTAACACCTCCAGCGTGTTGTTTCCTGCGCTGTTGTTGTCTG
TGTGCCACCAGCGTACCGTCTCGCGCTCTCCATTGTTGCTCACGTTACAC
TTCCCGCACACACAGCTGTACACGATCGTGTCTGTGGTGGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114293:125..569+

>mRNA_M-pyrifera_M_contig114293.2976.1 ID=mRNA_M-pyrifera_M_contig114293.2976.1|Name=mRNA_M-pyrifera_M_contig114293.2976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig114293:125..569+ (Macrocystis pyrifera P11B4 male)
TACAGCACGTTCAAGCGCCGTGCCCCGAAGGCCATCCGCGCCATCCGCGC
GTTCGTGGAGAAGGAGATGGGCACGTCTGACGTGCGCCTCGACTCTCGCC
TCAACAAGTACGTGTGGCACCGTGGTGTCCGCAACATCCCCCGCCGCGTG
CGTGTCCGCATGGAGCGCCGCTCCAACGAGGATGAGGATGCTGCCGAGAA
GTACAGCACGTTCAAGCGCCGTGCCCCGAAGGCCATCCGCGCCATCCGCG
CGTTCGTGGAGAAGGAGATGGGCACGTCTGACGTGCGCCTCGACTCTCGC
CTCAACAAGTACGTGTGGCACCGTGGTGTCCGCAACATCCCCCGCCGCGT
GCGTGTCCGCATGGAGCGCCGCTCCAACGAGGATGAGGATGCTGCCGAGA
AGCTGTACACGATCGTGTCTGTGGTGGAGGTGCTGTACACGATCGTGTCT
GTGGTGGAGGTG
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