mRNA_M-pyrifera_M_contig114138.2941.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114138.2941.1
Unique NamemRNA_M-pyrifera_M_contig114138.2941.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: D8LS75_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS75_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.030e-19
Identity = 38/46 (82.61%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVEV 138
            VRDWLR+GCDC+VIA K+DP+AAV+AMLPHLTPSRPFA+YSEF+EV
Sbjct:  357 VRDWLRQGCDCLVIACKFDPIAAVDAMLPHLTPSRPFAIYSEFIEV 402
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BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: H3GKY1_PHYRM (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKY1_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 2.460e-8
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R W+RE  D +VIA  YDP   + AMLP+L  S+PF VYSEF+E
Sbjct:   61 IRQWMREKSDSLVIAANYDPEEVLLAMLPYLARSKPFVVYSEFLE 105
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BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: H3GKX8_PHYRM (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GKX8_PHYRM)

HSP 1 Score: 56.2 bits (134), Expect = 5.690e-8
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R W+RE  D +VIA  YDP   + AMLP+L  S+PF VYSEF+E
Sbjct:  299 IRQWMREKSDSLVIAANYDPEEVLLAMLPYLARSKPFVVYSEFLE 343
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: A0A0W8CRU5_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CRU5_PHYNI)

HSP 1 Score: 55.8 bits (133), Expect = 6.630e-8
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVEV 138
            +R+W RE  D +VIA  YDP   + A+LP+L  S+PF VYSEF+EV
Sbjct:  229 IREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLEV 274
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: A0A3R7JUM1_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JUM1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-7
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R+W+RE  D +VIA  YDP   V A+LP+L  S+PF VYSEF+E
Sbjct:  299 IREWVREKSDSLVIAANYDPEELVLALLPYLGRSKPFVVYSEFLE 343
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: W2PH38_PHYPN (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PH38_PHYPN)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-7
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R+W RE  D +VIA  YDP   + A+LP+L  S+PF VYSEF+E
Sbjct:  281 IREWAREKSDSLVIAASYDPEEVLMALLPYLGRSKPFVVYSEFLE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: A0A0W8CAK1_PHYNI (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CAK1_PHYNI)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-7
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R+W RE  D +VIA  YDP   + A+LP+L  S+PF VYSEF+E
Sbjct:  339 IREWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE 383
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: A0A662WG54_9STRA (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WG54_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.090e-7
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R W+RE  D +VIA  YDP   + A+LP+L  S+PF +YSEF+E
Sbjct:  277 IRQWVRETSDSLVIAANYDPEQVLLALLPYLGRSKPFVIYSEFLE 321
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: G4YI76_PHYSP (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=4 Tax=Phytophthora TaxID=4783 RepID=G4YI76_PHYSP)

HSP 1 Score: 53.5 bits (127), Expect = 5.090e-7
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R W RE  D +VIA  YDP   + A+LP+L  S+PF VYSEF+E
Sbjct:  332 IRQWAREKSDSLVIAANYDPEEVLMALLPYLGRSKPFVVYSEFLE 376
[Close]
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Match: A0A0P1AWZ4_PLAHL (tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AWZ4_PLAHL)

HSP 1 Score: 53.5 bits (127), Expect = 5.100e-7
Identity = 22/45 (48.89%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVE 135
            +R+W+R+  D +VIA  YDP   + A+LP+L  S+PF +YSEF+E
Sbjct:  336 IREWVRQKSDSLVIAANYDPEKVLMALLPYLGRSKPFVIYSEFLE 380
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114138.2941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LS75_ECTSI1.030e-1982.61tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
H3GKY1_PHYRM2.460e-855.56tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
H3GKX8_PHYRM5.690e-855.56tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0W8CRU5_PHYNI6.630e-854.35tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A3R7JUM1_9STRA1.060e-755.56tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
W2PH38_PHYPN2.720e-753.33tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0W8CAK1_PHYNI2.720e-753.33tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A662WG54_9STRA5.090e-751.11tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
G4YI76_PHYSP5.090e-753.33tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]
A0A0P1AWZ4_PLAHL5.100e-748.89tRNA (adenine(58)-N(1))-methyltransferase non-cata... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114138contigM-pyrifera_M_contig114138:304..441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D8LS75
Preferred nameTRMT6
KEGG rclassRC00017,RC02950
KEGG koko:K03256,ko:K08730
KEGG ReactionR07376
KEGG Pathwayko00564,ko01100,ko01110,map00564,map01100,map01110
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000049,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0023052,GO:0030154,GO:0030488,GO:0031515,GO:0031974,GO:0031981,GO:0032259,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045168,GO:0046331,GO:0046483,GO:0048869,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990234
EggNOG free text desc.tRNA methylation
EggNOG OGsKOG1416@1,KOG1416@2759
EC2.7.8.29
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815656.714464-CDS-M-pyrifera_M_contig114138:303..4411622815656.714464-CDS-M-pyrifera_M_contig114138:303..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114138 304..441 +
1692277507.7243197-CDS-M-pyrifera_M_contig114138:303..4411692277507.7243197-CDS-M-pyrifera_M_contig114138:303..441Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114138 304..441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114138.2941.1prot_M-pyrifera_M_contig114138.2941.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114138 304..441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114138.2941.1

>prot_M-pyrifera_M_contig114138.2941.1 ID=prot_M-pyrifera_M_contig114138.2941.1|Name=mRNA_M-pyrifera_M_contig114138.2941.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
VRDWLREGCDCVVIAGKYDPLAAVEAMLPHLTPSRPFAVYSEFVEV
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mRNA from alignment at M-pyrifera_M_contig114138:304..441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114138.2941.1 ID=mRNA_M-pyrifera_M_contig114138.2941.1|Name=mRNA_M-pyrifera_M_contig114138.2941.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig114138:304..441+ (Macrocystis pyrifera P11B4 male)
GTACGGGACTGGCTGCGTGAGGGGTGCGACTGCGTGGTGATCGCCGGGAA
GTATGACCCACTGGCCGCAGTGGAGGCGATGCTGCCGCACCTCACCCCGT
CGAGGCCCTTCGCGGTCTACTCCGAGTTCGTAGAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114138:304..441+

>mRNA_M-pyrifera_M_contig114138.2941.1 ID=mRNA_M-pyrifera_M_contig114138.2941.1|Name=mRNA_M-pyrifera_M_contig114138.2941.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig114138:304..441+ (Macrocystis pyrifera P11B4 male)
GTACGGGACTGGCTGCGTGAGGGGTGCGACTGCGTGGTGATCGCCGGGAA
GTATGACCCACTGGCCGCAGTGGAGGCGATGCTGCCGCACCTCACCCCGT
CGAGGCCCTTCGCGGTCTACTCCGAGTTCGTAGAGGTGGTACGGGACTGG
CTGCGTGAGGGGTGCGACTGCGTGGTGATCGCCGGGAAGTATGACCCACT
GGCCGCAGTGGAGGCGATGCTGCCGCACCTCACCCCGTCGAGGCCCTTCG
CGGTCTACTCCGAGTTCGTAGAGGTG
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