mRNA_M-pyrifera_M_contig1140.2906.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig1140.2906.1
Unique NamemRNA_M-pyrifera_M_contig1140.2906.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Match: A0A6H5JTB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB3_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.000e-42
Identity = 96/164 (58.54%), Postives = 111/164 (67.68%), Query Frame = 1 
Query:    1 MGTGASLDRSGLAALGVFEVADLVSGSWLPEYRQASIDYGIDGEMLIRLPRDQLADALRRAGVESNDDLEFLLGELDNIRSPMIDSGKLDRENLRELLPQLDQQSSYGLGEGSDTSDWSGVSVNKYGRITALNVANRGLSGELPAALGDVSHLEHLHATSNCFA 492
            MG   SL+   L AL V E+ADL      PE+RQASID+GIDG ML  LP DQL DAL RAGVE    L +LL E++NIR P ID  KLDRENLR +L + D      L   S  S+WSGVSV+   RI ALNV NR LSGELPAAL ++S+LE+LHATSN FA
Sbjct:    1 MGVAMSLEE--LGALSVVELADLAP----PEHRQASIDFGIDGHMLTSLPLDQLQDALARAGVEDKQHLVYLLEEIENIRRPKIDPSKLDRENLRAILERSDSGDHEEL---SGRSEWSGVSVDSDDRIIALNVTNRHLSGELPAALFEISNLEYLHATSNLFA 155
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BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Match: D7FPI3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI3_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.920e-15
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  235 IRSPMIDSGKLDRENLRELLPQLDQQSSYGLGEGSDTSDWSGVSVNKYGRITALNVANRGLSGELPAALGDVSHLEHLHA 474
            IR P ID  KLDRENLR +L + D      L   S  S+WSGVSV+   RI  LNV NR LSGELPAAL ++S+LE+LHA
Sbjct:    2 IRCPRIDPSKLDRENLRAILERSDSNDREEL---SGRSEWSGVSVDSDDRIIVLNVTNRTLSGELPAALFEISNLEYLHA 78
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BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Match: A0A6N9A6Y2_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6N9A6Y2_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 1.810e-5
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  349 DWSGVSVNKYGRITALNVANRGLSGELPAALGDVSHLEHLHATSN 483
            DW GV  +  GR+TALN+A  GLSGELP +LG +S L HL  + N
Sbjct:  234 DWFGVETDSIGRVTALNLAENGLSGELPDSLGGLSSLRHLDISGN 278
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig1140.2906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JTB3_9PHAE1.000e-4258.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI3_ECTSI5.920e-1557.50Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6N9A6Y2_9BACT1.810e-555.56Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig1140contigM-pyrifera_M_contig1140:9841..11321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue4.1e-13
Seed eggNOG ortholog2880.D7FPI3
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001704,GO:0001706,GO:0003006,GO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0006810,GO:0006833,GO:0006950,GO:0007275,GO:0007369,GO:0007389,GO:0007492,GO:0008104,GO:0008150,GO:0009505,GO:0009531,GO:0009611,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009888,GO:0009987,GO:0010154,GO:0010453,GO:0010470,GO:0016020,GO:0022414,GO:0022603,GO:0030104,GO:0030154,GO:0030312,GO:0032501,GO:0032502,GO:0033036,GO:0035987,GO:0042044,GO:0042592,GO:0042659,GO:0044426,GO:0044462,GO:0044464,GO:0045184,GO:0045595,GO:0045995,GO:0048226,GO:0048316,GO:0048598,GO:0048608,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051302,GO:0055065,GO:0055067,GO:0055075,GO:0055080,GO:0061458,GO:0065001,GO:0065007,GO:0065008,GO:0071944,GO:0090558,GO:0090708,GO:0098771,GO:0099402,GO:1903224,GO:1905392,GO:1905421,GO:2000026,GO:2000067,GO:2000280
EggNOG free text desc.Leucine rich repeat N-terminal domain
EggNOG OGs2QV35@2759,COG4886@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size720
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig1140.2906.1prot_M-pyrifera_M_contig1140.2906.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig1140 9841..11321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815654.4881942-CDS-M-pyrifera_M_contig1140:9840..100671622815654.4881942-CDS-M-pyrifera_M_contig1140:9840..10067Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1140 9841..10067 -
1692277506.8331473-CDS-M-pyrifera_M_contig1140:9840..100671692277506.8331473-CDS-M-pyrifera_M_contig1140:9840..10067Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1140 9841..10067 -
1622815654.5022612-CDS-M-pyrifera_M_contig1140:10295..105541622815654.5022612-CDS-M-pyrifera_M_contig1140:10295..10554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1140 10296..10554 -
1692277506.8448994-CDS-M-pyrifera_M_contig1140:10295..105541692277506.8448994-CDS-M-pyrifera_M_contig1140:10295..10554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1140 10296..10554 -
1622815654.5180576-CDS-M-pyrifera_M_contig1140:11087..113211622815654.5180576-CDS-M-pyrifera_M_contig1140:11087..11321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1140 11088..11321 -
1692277506.8542306-CDS-M-pyrifera_M_contig1140:11087..113211692277506.8542306-CDS-M-pyrifera_M_contig1140:11087..11321Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig1140 11088..11321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig1140.2906.1

>prot_M-pyrifera_M_contig1140.2906.1 ID=prot_M-pyrifera_M_contig1140.2906.1|Name=mRNA_M-pyrifera_M_contig1140.2906.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=240bp
MGTGASLDRSGLAALGVFEVADLVSGSWLPEYRQASIDYGIDGEMLIRLP
RDQLADALRRAGVESNDDLEFLLGELDNIRSPMIDSGKLDRENLRELLPQ
LDQQSSYGLGEGSDTSDWSGVSVNKYGRITALNVANRGLSGELPAALGDV
SHLEHLHATSNCFAGCVPEAIGRLTCLKSLRLDHNNLSGRLPGSLTRLAS
LATLDLAWNGLEGTIPTKIGTMTALRKLNLGKNKARYCL*
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mRNA from alignment at M-pyrifera_M_contig1140:9841..11321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig1140.2906.1 ID=mRNA_M-pyrifera_M_contig1140.2906.1|Name=mRNA_M-pyrifera_M_contig1140.2906.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1481bp|location=Sequence derived from alignment at M-pyrifera_M_contig1140:9841..11321- (Macrocystis pyrifera P11B4 male)
ATGGGCACAGGGGCCAGCCTCGACCGCTCCGGTCTTGCCGCCCTCGGCGT
TTTTGAGGTAGCCGACTTGGTCTCGGGGTCCTGGCTGCCCGAGTACCGAC
AAGCGTCCATAGATTACGGCATCGATGGCGAGATGTTGATCAGACTCCCG
CGAGACCAGCTCGCCGACGCCTTGCGCCGGGCCGGTGTCGAAAGCAACGA
CGACCTCGAATTCCTTCTAGGAGAATTGGACAATGTGAGGAAGTTTATAC
GAGACGAACCTGCAATCTATAGGTAGCACAGCAGCAGCAGTAGGCTGTAG
GCAACCACATACCAGGTATACGCTGGCGTCAAGTATTTCGATGCGTCTTC
CTGTTGACTCTGGTGCAGGAGCCACGACCTGTACCGCGCTCGAGTCGTAT
TCGCGAATACTTCTGCAATTAGTAGTAATTGATCATATTATGAGAGGCAC
ACGTGTGATCGATATCGGTCACTGATCCTACAACGGAGTTGTTACTACTG
ATGTACCGTCTACGGACCCGAATCAGTGGCGTGCGCCGTACAGAAATCGT
GTTTGAATTTGAACATGTAACATTCGATCGCCACAAAAAGAGCGAGCAAC
TACAGAGTACTGAAAAATCAGTACGTACGCATACGATAAGAAGAGCACCA
GGTATTCAAGTCCACCCATTCGGCTGCAGAGACAACGTTTTGTATATTAT
CTTGACGACCTTACCGTTCGACGACAACTGCCACCTCTTTCTTTTAATTG
CTATTTACGCGGTCTAGATTCGATCCCCGATGATCGATAGTGGCAAACTC
GACCGAGAGAATCTGCGAGAGTTGCTTCCGCAGTTGGATCAGCAGTCGTC
GTACGGCCTTGGTGAGGGTTCGGACACGTCGGACTGGAGCGGAGTTTCGG
TAAACAAGTACGGCAGGATCACCGCACTCAATGTGGCGAACAGGGGTCTC
TCGGGCGAGCTGCCCGCCGCACTCGGAGATGTTTCGCATCTCGAGCATCT
GCACGCCACCTCAAACTGCTTCGCCGGTGAGCCGTTGTTGAGTACCTGTG
ATAACATGCTGCGAAATTGGGTAGTATGGTAAACCGGTCTTTGGAAAATA
CAAAAAGTGCACTCGTACGAACGAGTGACCAGATGCTACTGCCAAAAAAA
ACTTCAATACTCGTTCGAGTACACACGAAATTCGTCTAATTTGCCTTCGA
TGTGTCCCCCCCCGCCCTCTTGCTTTCTGTTCGATACACGCAACATCGAG
CTAGGGTGCGTACCGGAGGCTATCGGTCGCCTCACCTGCCTCAAATCTCT
CCGGCTCGACCACAACAACTTATCGGGACGGCTACCAGGTTCGCTGACGC
GCCTGGCGAGTCTCGCGACTCTCGACTTGGCGTGGAACGGCCTCGAAGGA
ACGATTCCCACGAAGATAGGAACTATGACAGCACTTCGGAAGCTGAATCT
GGGCAAGAACAAGGCAAGATACTGTTTGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig1140:9841..11321-

>mRNA_M-pyrifera_M_contig1140.2906.1 ID=mRNA_M-pyrifera_M_contig1140.2906.1|Name=mRNA_M-pyrifera_M_contig1140.2906.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1440bp|location=Sequence derived from alignment at M-pyrifera_M_contig1140:9841..11321- (Macrocystis pyrifera P11B4 male)
ATGGGCACAGGGGCCAGCCTCGACCGCTCCGGTCTTGCCGCCCTCGGCGT
TTTTGAGGTAGCCGACTTGGTCTCGGGGTCCTGGCTGCCCGAGTACCGAC
AAGCGTCCATAGATTACGGCATCGATGGCGAGATGTTGATCAGACTCCCG
CGAGACCAGCTCGCCGACGCCTTGCGCCGGGCCGGTGTCGAAAGCAACGA
CGACCTCGAATTCCTTCTAGGAGAATTGGACAATATGGGCACAGGGGCCA
GCCTCGACCGCTCCGGTCTTGCCGCCCTCGGCGTTTTTGAGGTAGCCGAC
TTGGTCTCGGGGTCCTGGCTGCCCGAGTACCGACAAGCGTCCATAGATTA
CGGCATCGATGGCGAGATGTTGATCAGACTCCCGCGAGACCAGCTCGCCG
ACGCCTTGCGCCGGGCCGGTGTCGAAAGCAACGACGACCTCGAATTCCTT
CTAGGAGAATTGGACAATATTCGATCCCCGATGATCGATAGTGGCAAACT
CGACCGAGAGAATCTGCGAGAGTTGCTTCCGCAGTTGGATCAGCAGTCGT
CGTACGGCCTTGGTGAGGGTTCGGACACGTCGGACTGGAGCGGAGTTTCG
GTAAACAAGTACGGCAGGATCACCGCACTCAATGTGGCGAACAGGGGTCT
CTCGGGCGAGCTGCCCGCCGCACTCGGAGATGTTTCGCATCTCGAGCATC
TGCACGCCACCTCAAACTGCTTCGCCGATTCGATCCCCGATGATCGATAG
TGGCAAACTCGACCGAGAGAATCTGCGAGAGTTGCTTCCGCAGTTGGATC
AGCAGTCGTCGTACGGCCTTGGTGAGGGTTCGGACACGTCGGACTGGAGC
GGAGTTTCGGTAAACAAGTACGGCAGGATCACCGCACTCAATGTGGCGAA
CAGGGGTCTCTCGGGCGAGCTGCCCGCCGCACTCGGAGATGTTTCGCATC
TCGAGCATCTGCACGCCACCTCAAACTGCTTCGCCGGGTGCGTACCGGAG
GCTATCGGTCGCCTCACCTGCCTCAAATCTCTCCGGCTCGACCACAACAA
CTTATCGGGACGGCTACCAGGTTCGCTGACGCGCCTGGCGAGTCTCGCGA
CTCTCGACTTGGCGTGGAACGGCCTCGAAGGAACGATTCCCACGAAGATA
GGAACTATGACAGCACTTCGGAAGCTGAATCTGGGCAAGAACAAGGCAAG
ATACTGTTTGTAGGGTGCGTACCGGAGGCTATCGGTCGCCTCACCTGCCT
CAAATCTCTCCGGCTCGACCACAACAACTTATCGGGACGGCTACCAGGTT
CGCTGACGCGCCTGGCGAGTCTCGCGACTCTCGACTTGGCGTGGAACGGC
CTCGAAGGAACGATTCCCACGAAGATAGGAACTATGACAGCACTTCGGAA
GCTGAATCTGGGCAAGAACAAGGCAAGATACTGTTTGTAG
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