mRNA_M-pyrifera_M_contig113814.2861.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113814.2861.1
Unique NamemRNA_M-pyrifera_M_contig113814.2861.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A356X522_9BACT (HisKA domain-containing protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A356X522_9BACT)

HSP 1 Score: 102 bits (254), Expect = 2.360e-22
Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = 1
Query:    1 YEEALSLSKKFRPNTPPVILLFNMGNLSLKMEDYDQAEKYFKESLVYSEELNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIAL---MLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQEFILKVLYGLI 531
            Y++A  L ++ RPN PP I++ N G    +M  + +AE     SL  SE + +P+GIY+N   L  + E  G  ++++   E+   +A     L+     L+  QK+YE    AG Y+ A   +   K L+DSL  + KEKE  ++K+ FEI RQ EIN+LL EKQ QQE  ++V   LI
Sbjct:  182 YDQAAVLWEELRPNAPPAIIIHNKGATLSRMGRFKEAEDLLFRSLEMSESIQLPQGIYFNHLELSRLYENAGQLEKSVFHIEQALPLARGSGSLSTLTAALQQAQKVYES---AGRYQKAYNTLVEDKALTDSLKTIEKEKELSELKSTFEISRQQEINELLEEKQAQQERQIRVQNFLI 358          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A2D9FVQ1_9BACT (Histidine kinase domain-containing protein n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D9FVQ1_9BACT)

HSP 1 Score: 100 bits (248), Expect = 2.970e-21
Identity = 62/177 (35.03%), Postives = 98/177 (55.37%), Query Frame = 1
Query:    1 YEEALSLSKKFRPNTPPVILLFNMGNLSLKMEDYDQAEKYFKESLVYSEELNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQEFILKVLYGLI 531
            Y++A  L ++ RPN PP I++ N G    +M  + +AE     SL  SE + +P+GIY+N   L  + E  G  ++++   E+   +A    +   +  + Q+  ++   AG Y+ A   +   K L+DSL  + KEKE  ++K+ FEI RQ EIN+LL EKQ QQE  ++V   LI
Sbjct:  251 YDQAAVLWEELRPNAPPAIIIHNKGATLSRMGRFKEAEDLLFRSLEMSESIQLPQGIYFNHLELSRLYENAGQLEKSVFHIEQALPLARGSGSLSTLTAALQQAQKVYASAGRYQKAYNTLVEDKALTDSLKTIEKEKELSELKSTFEISRQQEINELLEEKQTQQERQIRVQNILI 427          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A521FM36_9BACT (Signal transduction histidine kinase n=2 Tax=Gracilimonas mengyeensis TaxID=1302730 RepID=A0A521FM36_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.240e-17
Identity = 59/177 (33.33%), Postives = 85/177 (48.02%), Query Frame = 1
Query:    1 YEEALSLSKKFRPNTPPVILLFNMGNLSLKMEDYDQAEKYFKESLVYSEELNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQEFILKVLYGLI 531
            YE A +L ++  PN PP+IL FNMGNL+  M++YDQAE Y +ESL YSE+ N+ EGIYYN   LG +   +G                                                        DS+  + +E+E  +++++ E+ RQ EIN+LL EKQ QQE  +++   LI
Sbjct:  260 YERAYALHQELFPNRPPMILFFNMGNLNRLMKNYDQAEGYLRESLDYSEQSNVFEGIYYNVWELGELYYDQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSMATIEQERELANMESQLELNRQNEINELLQEKQAQQERRIEIQNILI 436          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A6M1SQP5_9BACT (Sensor histidine kinase n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SQP5_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 6.790e-16
Identity = 46/125 (36.80%), Postives = 75/125 (60.00%), Query Frame = 1
Query:  142 SEELNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQEFILKV 516
            S +L IP+GIY+N  GLGN+E  RG+  EA+  + +  E+A  LNN  F+  +  KLYEL +  G Y  AL ++E+   +SDSL    KE+   D +   +++R+ ++N+ L  ++  QE  L++
Sbjct:  294 SRKLGIPQGIYFNSTGLGNIEIGRGDFSEAVVYYNDALEVAQQLNNPTFLKAAHDKLYELRKELGEYALALNHLEQATAISDSLTTREKEQMLADYQTRLQVQRKDQMNKTLQAEKASQEAQLQL 418          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A2A2G9Y3_9BACT (Histidine kinase domain-containing protein n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G9Y3_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.730e-14
Identity = 42/115 (36.52%), Postives = 74/115 (64.35%), Query Frame = 1
Query:  157 IPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQE 501
            +P G+++N  GLG+V   RG    + + + + +EIA  +++ PF + + +KLYE+ +  GN+E AL Y E  K +SD L +++K+++    + E  +++Q +INQLL EKQ QQ+
Sbjct:  321 VPAGLFHNFVGLGDVAAARGEYSASTNFYNDAFEIAEKVDSPPFRISAAEKLYEVYKEEGNFEQALKYHELAKQVSDRLTEVQKDEQLALAETELGLRQQQKINQLLQEKQAQQQ 435          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A3D4UT00_9BACT (Histidine kinase domain-containing protein n=4 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D4UT00_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 3.180e-9
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  139 YSEELNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEF 441
            Y  +L IP+G+Y+N  GLG++ E       AIS +++  ++A  L+ N +I++  +KLY  N+ AG    AL  +E +K LSDSL     +    ++++E 
Sbjct:  311 YCIDLKIPQGLYFNYKGLGDLYENFSQPYTAISWYQKALDVATELDQNLYIVQLHEKLYLTNKEAGETAQALKALENFKALSDSLAKKESDNALSELESEI 411          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A0Q8ZNT5_9FLAO (Histidine kinase domain-containing protein n=1 Tax=Flavobacterium sp. Root901 TaxID=1736605 RepID=A0A0Q8ZNT5_9FLAO)

HSP 1 Score: 62.0 bits (149), Expect = 5.090e-8
Identity = 42/153 (27.45%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   52 VILLFNMGNLSLKMEDYDQAEKYFKESLVYSEELNIPE---GIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQE 501
            +++ F  GN   +++DY  AEKYF E   Y+ +LN PE    +      +      R N ++A     +V  ++   +           LY ++ + G+Y  AL + + +K LSDS+ D+ K K+ E++K ++E + + E   LL+++ + QE
Sbjct:  391 MLIAFAFGNCYWELKDYRNAEKYFLEMDTYASKLNSPETFRDVANCYSTIAAFYAGRKNLEKATYYSNKVLALSSKYDKKYNSQTLMTSLYRIDSLKGDYRSALAHYKIFKKLSDSIYDISKNKQIEELKIQYETENKEEKITLLNKQSKLQE 543          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A521CLU2_9BACT (Signal transduction histidine kinase n=2 Tax=Aliifodinibius sediminis TaxID=1214077 RepID=A0A521CLU2_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 5.720e-7
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  283 PFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEKQEQQEFILKVLYGLI 531
            P   ++ + LY+L +  G YE+AL Y E++  +SDSL ++ +++E E  + +  ++RQ EINQLL EKQEQQ+  + V   +I
Sbjct:  355 PLERDALESLYDLMKSQGAYEEALNYHEKFVVISDSLQNVSRQQEIEKAETKLGLRRQEEINQLLQEKQEQQQARIAVQNWMI 437          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: A0A1Q3S5J2_9FLAO (Uncharacterized protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A1Q3S5J2_9FLAO)

HSP 1 Score: 58.5 bits (140), Expect = 7.440e-7
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    4 EEALSLSKKFRP-------NTPPVILLFNMGNLSLKMEDYDQAEKYFKESLVYSEELNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLL 477
            + +L L KK +        N    I    + N  L +E    +EK F   L       +P  I +N   + +  +++ N   AI+ +E  Y+IA           S Q+L +L R+ GNY++ALVY  +Y    D+L +++KEK  +D+  ++E K++ E  +LL
Sbjct:  215 KHSLELRKKLKDISGQAESNNNIAIAYMGLKNWDLALEYLYTSEKLF---LSGGNNKEVPITIMHN---IAHCLKEKNNIDGAIAKYELAYKIAQSKKMQNESRISLQQLSKLERIKGNYKEALVYYMKYSKTKDTLFNIQKEKAIQDVSTKYETKQKEEKIKLL 373          
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Match: UPI000894F454 (sensor histidine kinase n=1 Tax=Flavobacterium frigidimaris TaxID=262320 RepID=UPI000894F454)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-6
Identity = 47/177 (26.55%), Postives = 87/177 (49.15%), Query Frame = 1
Query:    4 EEALSLSKKFRPNTPP------VILLFNMGNLSLKMEDYDQAEKYFKESLVYSEELNIPEGIY-----YNKGGLGNVEEQRGN-----TQEAISLHEEVYEIALMLNNNPFILESQQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIKRQTEINQLLSEK 486
            +EAL        N PP      ++L +   N    +++Y+ AEK FKE  +Y+E+L  PE +      Y    L      +         +A+SL ++ Y+     +N       Q  L+ ++ + GNY  ++V+ + YK +SDS+ D+ K K+ E++K ++E K + +   LL+++
Sbjct:  369 KEALDYINSMTLNYPPTNTFDKMMLAYTKANCYAALKNYNLAEKNFKEIGLYAEKLIAPERVKEVIVCYQSTALFYANRHQAKKAQYYADKAVSLSKK-YKTQTNTDN------LQIALFLIDSLNGNYHSSIVHFQNYKKISDSIHDISKNKQIEELKIQYETKNKEQKIALLNDQ 538          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113814.2861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A356X522_9BACT2.360e-2237.22HisKA domain-containing protein (Fragment) n=1 Tax... [more]
A0A2D9FVQ1_9BACT2.970e-2135.03Histidine kinase domain-containing protein n=2 Tax... [more]
A0A521FM36_9BACT1.240e-1733.33Signal transduction histidine kinase n=2 Tax=Graci... [more]
A0A6M1SQP5_9BACT6.790e-1636.80Sensor histidine kinase n=1 Tax=Balneolaceae bacte... [more]
A0A2A2G9Y3_9BACT2.730e-1436.52Histidine kinase domain-containing protein n=1 Tax... [more]
A0A3D4UT00_9BACT3.180e-933.66Histidine kinase domain-containing protein n=4 Tax... [more]
A0A0Q8ZNT5_9FLAO5.090e-827.45Histidine kinase domain-containing protein n=1 Tax... [more]
A0A521CLU2_9BACT5.720e-739.76Signal transduction histidine kinase n=2 Tax=Aliif... [more]
A0A1Q3S5J2_9FLAO7.440e-728.48Uncharacterized protein n=2 Tax=Flavobacterium Tax... [more]
UPI000894F4541.980e-626.55sensor histidine kinase n=1 Tax=Flavobacterium fri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113814contigM-pyrifera_M_contig113814:5..535 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score99.8
Seed ortholog evalue1.4e-18
Seed eggNOG ortholog1121930.AQXG01000018_gene769
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
EggNOG OGs4PKMH@976,COG5002@1,COG5002@2
COG Functional cat.T
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
Exons1
Model size531
Cds size531
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.2369282-CDS-M-pyrifera_M_contig113814:4..5351622815652.2369282-CDS-M-pyrifera_M_contig113814:4..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113814 5..535 -
1692277505.8950787-CDS-M-pyrifera_M_contig113814:4..5351692277505.8950787-CDS-M-pyrifera_M_contig113814:4..535Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113814 5..535 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113814.2861.1prot_M-pyrifera_M_contig113814.2861.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113814 5..535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113814.2861.1

>prot_M-pyrifera_M_contig113814.2861.1 ID=prot_M-pyrifera_M_contig113814.2861.1|Name=mRNA_M-pyrifera_M_contig113814.2861.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=177bp
YEEALSLSKKFRPNTPPVILLFNMGNLSLKMEDYDQAEKYFKESLVYSEE
LNIPEGIYYNKGGLGNVEEQRGNTQEAISLHEEVYEIALMLNNNPFILES
QQKLYELNRVAGNYEDALVYIERYKTLSDSLLDLRKEKEFEDIKNEFEIK
RQTEINQLLSEKQEQQEFILKVLYGLI
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mRNA from alignment at M-pyrifera_M_contig113814:5..535-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113814.2861.1 ID=mRNA_M-pyrifera_M_contig113814.2861.1|Name=mRNA_M-pyrifera_M_contig113814.2861.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=531bp|location=Sequence derived from alignment at M-pyrifera_M_contig113814:5..535- (Macrocystis pyrifera P11B4 male)
TATGAAGAAGCACTTAGTTTAAGTAAAAAATTCAGACCTAATACGCCACC GGTTATTCTTTTGTTTAATATGGGGAATCTGAGTTTAAAAATGGAAGATT ACGATCAGGCTGAGAAATACTTCAAAGAATCGTTAGTCTACAGCGAGGAG TTAAATATTCCTGAAGGTATCTATTATAATAAGGGGGGGTTAGGGAATGT AGAAGAGCAAAGAGGAAATACTCAAGAGGCTATAAGTTTGCATGAAGAGG TGTATGAAATAGCACTGATGTTGAACAATAACCCATTTATTTTAGAAAGT CAGCAAAAGCTGTACGAGCTTAATAGAGTTGCAGGTAACTATGAAGACGC ACTTGTATACATAGAAAGATATAAGACTCTATCAGATAGTTTATTGGATT TGAGAAAAGAGAAAGAATTTGAAGACATCAAAAATGAATTTGAGATTAAA AGACAGACTGAAATAAACCAATTACTATCTGAAAAACAGGAACAACAAGA GTTTATTTTGAAAGTGCTGTACGGGTTGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113814:5..535-

>mRNA_M-pyrifera_M_contig113814.2861.1 ID=mRNA_M-pyrifera_M_contig113814.2861.1|Name=mRNA_M-pyrifera_M_contig113814.2861.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1062bp|location=Sequence derived from alignment at M-pyrifera_M_contig113814:5..535- (Macrocystis pyrifera P11B4 male)
TATGAAGAAGCACTTAGTTTAAGTAAAAAATTCAGACCTAATACGCCACC
GGTTATTCTTTTGTTTAATATGGGGAATCTGAGTTTAAAAATGGAAGATT
ACGATCAGGCTGAGAAATACTTCAAAGAATCGTTAGTCTACAGCGAGGAG
TTAAATATTCCTGAAGGTATCTATTATAATAAGGGGGGGTTAGGGAATGT
AGAAGAGCAAAGAGGAAATACTCAAGAGGCTATAAGTTTGCATGAAGAGG
TGTATGAAATAGCACTGATGTTGAACAATAACCCATTTATTTTAGAAAGT
CAGCAAAAGCTGTACGAGCTTAATAGAGTTGCAGGTAACTATGAAGACGC
ACTTGTATACATAGAAAGATATAAGACTCTATCAGATAGTTTATTGGATT
TGAGAAAAGAGAAAGAATTTGAAGACATCAAAAATGAATTTGAGATTAAA
AGACAGACTGAAATAAACCAATTACTATCTGAAAAACAGGAACAACAAGA
GTTTATTTTGAAAGTGCTGTACGGGTTGATCTATGAAGAAGCACTTAGTT
TAAGTAAAAAATTCAGACCTAATACGCCACCGGTTATTCTTTTGTTTAAT
ATGGGGAATCTGAGTTTAAAAATGGAAGATTACGATCAGGCTGAGAAATA
CTTCAAAGAATCGTTAGTCTACAGCGAGGAGTTAAATATTCCTGAAGGTA
TCTATTATAATAAGGGGGGGTTAGGGAATGTAGAAGAGCAAAGAGGAAAT
ACTCAAGAGGCTATAAGTTTGCATGAAGAGGTGTATGAAATAGCACTGAT
GTTGAACAATAACCCATTTATTTTAGAAAGTCAGCAAAAGCTGTACGAGC
TTAATAGAGTTGCAGGTAACTATGAAGACGCACTTGTATACATAGAAAGA
TATAAGACTCTATCAGATAGTTTATTGGATTTGAGAAAAGAGAAAGAATT
TGAAGACATCAAAAATGAATTTGAGATTAAAAGACAGACTGAAATAAACC
AATTACTATCTGAAAAACAGGAACAACAAGAGTTTATTTTGAAAGTGCTG
TACGGGTTGATC
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