mRNA_M-pyrifera_M_contig113813.2860.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113813.2860.1
Unique NamemRNA_M-pyrifera_M_contig113813.2860.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A7Y2N9X5_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N9X5_9ACTN)

HSP 1 Score: 185 bits (469), Expect = 7.760e-56
Identity = 100/185 (54.05%), Postives = 127/185 (68.65%), Query Frame = 1
Query:    4 LSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFIL----DEVQAADGVTSDDPDVAQAEAVAFVLDNQDEFDDWRYLATSDPSRGEATSLAGEFLAEFDIYENTSDYLPLTFGAYNTGG 546
            L+FI GL FD F RGLLSV+VGVVVLIGGTYL+VATN+G+RTGGLI+ + LFGWMMLMG+ WT+YGIGW G+A +WEL E+  D+L+LAES    +LG  L    D  +A DG    D D  Q  A  F   N+D  + W +L  S+  RG+A S A EFL E   +E+T+DY+PL +G +  GG
Sbjct:    5 LAFIGGLEFDIFFRGLLSVLVGVVVLIGGTYLIVATNTGSRTGGLIALSGLFGWMMLMGVVWTIYGIGWVGEAQSWELKEVTTDDLELAESPEVSELGIALGRDNDFFEAIDGA---DFDTRQNNAKEFADSNEDLLNGWEFLVASNSRRGDAQSAAEEFLLEEGYFESTADYIPLEYGGFAFGG 186          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A7Y2DLF5_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DLF5_9ACTN)

HSP 1 Score: 184 bits (468), Expect = 8.120e-55
Identity = 97/185 (52.43%), Postives = 129/185 (69.73%), Query Frame = 1
Query:    1 MLSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAAD---GVTSDDPDVAQAEAVAFVLDNQDEFDDWRYLATSDPSRGEATSLAGEFLAEFDIYENTSDYLPLTFGAYNTGG 546
            ML+F+ GL FD F RGLLSV+VGVVVLIGG+YL+VATN+G+RTGGLI+  ALFGWM LMG+ WTVYGIGW G+A +W L E+   +L+LAE+  A +LG  L   ++ D    V+  D D  Q  A+ F  +N+D    W YLA S+P RG+A S A E+L E ++++  +DY+PL FG +  GG
Sbjct:    6 MLAFVGGLEFDIFFRGLLSVLVGVVVLIGGSYLIVATNTGSRTGGLIAFGALFGWMFLMGIVWTVYGIGWVGEAQSWSLEEVSTGDLELAENVDASELGISLG--RSNDFFASVSGADADERQRNALEFASENEDRLSGWEYLAASNPRRGDAQSAAEEYLIEENVFDTPNDYIPLQFGGFALGG 188          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A6N7FWF2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FWF2_9ACTN)

HSP 1 Score: 137 bits (346), Expect = 1.310e-36
Identity = 79/178 (44.38%), Postives = 109/178 (61.24%), Query Frame = 1
Query:   13 IEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPDVAQAEAVAFVLDNQDEFDDWRYLATSDPSRGEATSLAGEFLAEFDIYENTSDYLPLTFGAYNTGG 546
            I+G+ +DPFIRG L+V+VGV VL+G  YLL+ATNSGARTG LI+   LFGWM +MG+ W VYGIG +G AP WE+ EI   +L LA  + AQDLG  LDE  A     ++D  + +   VA      +E   W  +  ++  RGEA ++   +L E   +   ++YLP+   A+  GG
Sbjct:    9 IDGISYDPFIRGWLTVIVGVAVLMGSVYLLLATNSGARTGLLIALTGLFGWMTIMGVIWWVYGIGLKGPAPAWEVTEINRGDLALAAFDEAQDLGVALDERLA-----TEDESLQRLAEVAEERGVPEELGGWDEMLLTNAKRGEAQAVTDAYLVESGSFATANEYLPVA--AFEIGG 179          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A349B0H0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B0H0_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 1.770e-32
Identity = 82/190 (43.16%), Postives = 117/190 (61.58%), Query Frame = 1
Query:    4 LSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPD-VAQAEAVAFVLDN---QDEFDDWRYLATSDPSRGEATSLAGEFLAE-----FDIYENTSDYLPLTFGAYNTGG 546
            L+ I G+ FDP IRG+L+V+VGVVVL+G  YLL+ATN+G R G L++   LFGWM +MG  W +YGIG +G AP W++VE    +++ A +E+  +L  + D  Q  DGV  +    +A+ +   FV  N   Q++ + WR++  SDPSRGEA +     L E     F I EN +D+L L  GA+  GG
Sbjct:    4 LNLIAGIAFDPTIRGILAVLVGVVVLMGSVYLLLATNTGNRLGFLLALTGLFGWMAIMGSIWWIYGIGMQGQAPEWDVVEYNAGDVEQAVTEKVTELE-LSDLPQDDDGVDYEAMSTLAEEDPERFVEINERFQEDSNGWRWMPASDPSRGEAEATVSAELPECSTCNFGI-ENPADFLVL--GAFEVGG 189          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A7W0LR60_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0LR60_9ACTN)

HSP 1 Score: 105 bits (263), Expect = 2.950e-24
Identity = 72/191 (37.70%), Postives = 108/191 (56.54%), Query Frame = 1
Query:   22 LGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPDVAQ--AEA-----------VAFVLDNQDEFD--DWRYLATSDPSRGEATSLAGEFLAEF-DIYENTSDYLPLTFGAYNTGG 546
            + +DP  RG+L V VGV VL G  YLL+ATNSG R G L++   L GWM +MG+ W++YGIG+ G   +W++ E+  D L  A    A+ +    D++ A D +  +DPD+A   AEA           V   L  +D+ D  +W  L+TSDP  GEA + A  +L E   ++ ++S ++ +   AY+ GG
Sbjct:   11 MSWDPGFRGILVVAVGVAVLCGSVYLLLATNSGHRLGFLLALTGLMGWMTIMGVVWSMYGIGYLGSQASWKVEEVNYDALPEAALPEARTVPA-PDDLPAVDAILEEDPDLAGQFAEADREPTLGDLLSVQPELSERDDLDFGEWELLSTSDPQTGEAQAAASAYLIEERKLFSDSSGFVVVD--AYSRGG 198          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A7K2BRT7_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2BRT7_9ACTN)

HSP 1 Score: 106 bits (264), Expect = 3.460e-24
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    4 LSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPDVAQAE 366
            L  I GLG+DP IRG ++V  GVVVL+G  +LL+A N+G R G L++    FGWM++M L W +YGIGW G+APTW+L EI   +LD A  E+A  L    +   A + V   D  VAQAE
Sbjct:    4 LDLIAGLGWDPEIRGFMAVFAGVVVLMGSVWLLLALNTGTRLGTLVAVTGFFGWMVIMALVWWIYGIGWAGNAPTWQLREINVGDLDAAALEQATTLPDAGELPSAFNLVLDSDDPVAQAE 124          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A7X6ART2_9ACTN (Uncharacterized protein (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ART2_9ACTN)

HSP 1 Score: 104 bits (259), Expect = 1.040e-23
Identity = 58/108 (53.70%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 MLSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDN----------LDLAESERAQDL 294
            M+  I GL +DP IRG LSV+ GVVVL+G  +LL++TNSG R G LI+ A  FGWM +M   W +YGIG+RGDAPTWEL EIV             LD AE  R++DL
Sbjct:    1 MVDLIAGLAWDPEIRGFLSVLTGVVVLMGSVWLLLSTNSGVRLGTLIALAGFFGWMAIMAAIWWIYGIGYRGDAPTWELEEIVEGMDEEGHLTFAALDEAERLRSEDL 108          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A6B1E6C7_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E6C7_9ACTN)

HSP 1 Score: 103 bits (256), Expect = 4.800e-23
Identity = 55/118 (46.61%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   13 IEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPDVAQAE 366
            I GL +DP IRG ++V  GV+VL+G  +LL+A N+G R G L++ A  FGWM++M   W +YGIGW GD PTW+L EI   +LD A  E A+ L  + +   A + V + +  VAQAE
Sbjct:    5 IAGLAWDPEIRGFMAVFAGVIVLMGSVWLLLALNTGTRLGTLVATAGFFGWMVIMAAVWWIYGIGWAGDTPTWQLQEINVGDLDAAALEEARVLPDLPELPTAFELVVNSNDPVAQAE 122          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A7K0ZHG0_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K0ZHG0_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 1.570e-22
Identity = 65/158 (41.14%), Postives = 93/158 (58.86%), Query Frame = 1
Query:    1 MLSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPDVAQAEAVAFVLDNQDEFDDWRYLATSDPSRGEATSLAGEFL 474
            MLS +  + F+P IRG+L V+V  V LIGGTYL+V +N GAR G L+  AAL GWMM M L W +YGIG +G  P W+ +E +    D A  +RA+    +L+     DG+   DP+ A A+    +++     D W  L  +DP+RG+A + + E L
Sbjct:    1 MLSALLSIDFNPGIRGILVVLVMFVFLIGGTYLIVGSNLGARLGFLVVAAALAGWMMCMCLVWVIYGIGLKGPEPKWKPMEPITIVRDGALLDRAE----VLETPVNIDGL---DPEAAAAKVSETLVE-----DGWTLLDDADPARGKAVAASDEIL 146          
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Match: A0A6I2ZII7_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I2ZII7_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 1.630e-22
Identity = 66/167 (39.52%), Postives = 92/167 (55.09%), Query Frame = 1
Query:    4 LSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGAALFGWMMLMGLFWTVYGIGWRGDAPTWELVE---IVGDNLDLAESERAQDLGFILDEVQAADGVTSDDPDVAQAEAVAFVLDNQDEFDDWRYLATSDPSRGEATSLAGEFL-AEFDIY 492
            +S +  +G++P +RGLL+V++G V L G  YLL+ TN G R G L++ A LFGWMM+MG+ W  YGIG +G  P+W+  E   IV D   L E+      G I   V  AD  T   P++A   A A   +N      W  L T D  RG+A + A E +  E ++Y
Sbjct:    1 MSALLSIGWEPELRGLLTVIIGAVALCGSVYLLLGTNLGIRLGLLVAMAGLFGWMMMMGVIWMTYGIGLKGTEPSWKPSEPFTIVRDAKFLHEA------GVIDGPVTVADSATY--PEIAAIAATAIENEN------WELLPTDDQGRGQAVAAADEIIQVEAEMY 153          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113813.2860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2N9X5_9ACTN7.760e-5654.05Uncharacterized protein (Fragment) n=1 Tax=Acidimi... [more]
A0A7Y2DLF5_9ACTN8.120e-5552.43Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A6N7FWF2_9ACTN1.310e-3644.38Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A349B0H0_9ACTN1.770e-3243.16Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7W0LR60_9ACTN2.950e-2437.70Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A7K2BRT7_9ACTN3.460e-2448.76Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A7X6ART2_9ACTN1.040e-2353.70Uncharacterized protein (Fragment) n=1 Tax=Actinom... [more]
A0A6B1E6C7_9ACTN4.800e-2346.61Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A7K0ZHG0_9ACTN1.570e-2241.14Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I2ZII7_9ACTN1.630e-2239.52Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113813contigM-pyrifera_M_contig113813:5..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.3
Seed ortholog evalue6.2e-14
Seed eggNOG ortholog1229780.BN381_450007
Hectar predicted targeting categorysignal anchor
EggNOG OGs2FE68@1,2H83B@201174,34663@2
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size546
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.2007031-CDS-M-pyrifera_M_contig113813:4..5501622815652.2007031-CDS-M-pyrifera_M_contig113813:4..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113813 5..550 +
1692277505.877258-CDS-M-pyrifera_M_contig113813:4..5501692277505.877258-CDS-M-pyrifera_M_contig113813:4..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113813 5..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113813.2860.1prot_M-pyrifera_M_contig113813.2860.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113813 5..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113813.2860.1

>prot_M-pyrifera_M_contig113813.2860.1 ID=prot_M-pyrifera_M_contig113813.2860.1|Name=mRNA_M-pyrifera_M_contig113813.2860.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=182bp
MLSFIEGLGFDPFIRGLLSVMVGVVVLIGGTYLLVATNSGARTGGLISGA
ALFGWMMLMGLFWTVYGIGWRGDAPTWELVEIVGDNLDLAESERAQDLGF
ILDEVQAADGVTSDDPDVAQAEAVAFVLDNQDEFDDWRYLATSDPSRGEA
TSLAGEFLAEFDIYENTSDYLPLTFGAYNTGG
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mRNA from alignment at M-pyrifera_M_contig113813:5..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113813.2860.1 ID=mRNA_M-pyrifera_M_contig113813.2860.1|Name=mRNA_M-pyrifera_M_contig113813.2860.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig113813:5..550+ (Macrocystis pyrifera P11B4 male)
ATGCTGTCGTTCATTGAGGGGCTGGGTTTCGACCCGTTCATCCGTGGCCT GTTGTCGGTCATGGTCGGCGTCGTCGTGCTCATCGGTGGCACCTACCTGC TGGTCGCCACCAACTCCGGAGCCCGCACCGGTGGGCTCATCTCGGGCGCC GCCCTGTTCGGTTGGATGATGTTGATGGGTCTGTTCTGGACCGTCTACGG CATCGGCTGGCGAGGCGACGCTCCCACCTGGGAGCTCGTCGAGATCGTCG GCGACAATCTCGATCTGGCCGAGTCCGAACGAGCCCAAGACCTCGGGTTC ATCCTCGACGAGGTCCAGGCGGCCGACGGTGTCACCTCCGACGACCCCGA CGTCGCCCAGGCCGAGGCCGTGGCCTTCGTGCTCGACAACCAAGACGAGT TCGACGACTGGCGTTACCTCGCAACCTCGGATCCGTCACGAGGCGAGGCC ACCTCGCTCGCCGGCGAATTCCTGGCCGAGTTCGACATCTACGAAAACAC GAGCGACTACCTGCCGCTCACCTTCGGGGCCTACAACACCGGGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113813:5..550+

>mRNA_M-pyrifera_M_contig113813.2860.1 ID=mRNA_M-pyrifera_M_contig113813.2860.1|Name=mRNA_M-pyrifera_M_contig113813.2860.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1092bp|location=Sequence derived from alignment at M-pyrifera_M_contig113813:5..550+ (Macrocystis pyrifera P11B4 male)
ATGCTGTCGTTCATTGAGGGGCTGGGTTTCGACCCGTTCATCCGTGGCCT
GTTGTCGGTCATGGTCGGCGTCGTCGTGCTCATCGGTGGCACCTACCTGC
TGGTCGCCACCAACTCCGGAGCCCGCACCGGTGGGCTCATCTCGGGCGCC
GCCCTGTTCGGTTGGATGATGTTGATGGGTCTGTTCTGGACCGTCTACGG
CATCGGCTGGCGAGGCGACGCTCCCACCTGGGAGCTCGTCGAGATCGTCG
GCGACAATCTCGATCTGGCCGAGTCCGAACGAGCCCAAGACCTCGGGTTC
ATCCTCGACGAGGTCCAGGCGGCCGACGGTGTCACCTCCGACGACCCCGA
CGTCGCCCAGGCCGAGGCCGTGGCCTTCGTGCTCGACAACCAAGACGAGT
TCGACGACTGGCGTTACCTCGCAACCTCGGATCCGTCACGAGGCGAGGCC
ACCTCGCTCGCCGGCGAATTCCTGGCCGAGTTCGACATCTACGAAAACAC
GAGCGACTACCTGCCGCTCACCTTCGGGGCCTACAACACCGGGGGCATGC
TGTCGTTCATTGAGGGGCTGGGTTTCGACCCGTTCATCCGTGGCCTGTTG
TCGGTCATGGTCGGCGTCGTCGTGCTCATCGGTGGCACCTACCTGCTGGT
CGCCACCAACTCCGGAGCCCGCACCGGTGGGCTCATCTCGGGCGCCGCCC
TGTTCGGTTGGATGATGTTGATGGGTCTGTTCTGGACCGTCTACGGCATC
GGCTGGCGAGGCGACGCTCCCACCTGGGAGCTCGTCGAGATCGTCGGCGA
CAATCTCGATCTGGCCGAGTCCGAACGAGCCCAAGACCTCGGGTTCATCC
TCGACGAGGTCCAGGCGGCCGACGGTGTCACCTCCGACGACCCCGACGTC
GCCCAGGCCGAGGCCGTGGCCTTCGTGCTCGACAACCAAGACGAGTTCGA
CGACTGGCGTTACCTCGCAACCTCGGATCCGTCACGAGGCGAGGCCACCT
CGCTCGCCGGCGAATTCCTGGCCGAGTTCGACATCTACGAAAACACGAGC
GACTACCTGCCGCTCACCTTCGGGGCCTACAACACCGGGGGC
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