mRNA_M-pyrifera_M_contig113227.2758.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113227.2758.1
Unique NamemRNA_M-pyrifera_M_contig113227.2758.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A6F9BIK6_9TELE (C2 domain-containing protein n=1 Tax=Coregonus sp. 'balchen' TaxID=861768 RepID=A0A6F9BIK6_9TELE)

HSP 1 Score: 86.7 bits (213), Expect = 1.560e-19
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D F+   R+  DGT     +T VVK + NP W++ ++ ++ LCNGD  R + A+VYDWDRDG+HD+IGEFT +
Sbjct:   51 DPFMVFYRSNEDGTFTICHKTEVVKNTLNPVWQDISIPVRALCNGDFDRTIKAEVYDWDRDGSHDFIGEFTTS 123
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BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A5C6MFI9_9TELE (Copine-5 n=1 Tax=Takifugu flavidus TaxID=433684 RepID=A0A5C6MFI9_9TELE)

HSP 1 Score: 82.8 bits (203), Expect = 7.800e-19
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D F+   R+  DGT     +T V+K + NP W+  ++ ++ LCNGD  R +  ++YDWDRDG+HD+IGEFT +
Sbjct:   18 DPFMVFYRSNEDGTFTICHKTEVMKNTLNPVWQAFSIPVRALCNGDYERTIKVEIYDWDRDGSHDFIGEFTTS 90
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BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: UPI0009A42DC2 (copine-5-like n=1 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A42DC2)

HSP 1 Score: 84.0 bits (206), Expect = 9.760e-19
Identity = 35/71 (49.30%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFT 213
            D FL   R+  DGT     +T VVK + NP W+   + ++ LCNGD  R +  +VYDWDRDG+HD+IGEFT
Sbjct:   18 DPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQAFTIPVRALCNGDFDRTIKVEVYDWDRDGSHDFIGEFT 88
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BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A8J6EKL2_ELECQ (C2 domain-containing protein (Fragment) n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EKL2_ELECQ)

HSP 1 Score: 82.4 bits (202), Expect = 9.950e-19
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL   R+  DG+     +T VVK + NP W+   + ++ LCNGD  R +  +VYDWDRDG+HDYIGEF+ +
Sbjct:   27 DPFLVFYRSNEDGSFTICHKTEVVKNTLNPVWQAFKIPVRALCNGDFDRTIKVEVYDWDRDGSHDYIGEFSTS 99
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BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A673YT15_SALTR (Copine-5-like n=1 Tax=Salmo trutta TaxID=8032 RepID=A0A673YT15_SALTR)

HSP 1 Score: 88.2 bits (217), Expect = 9.950e-19
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL   R+  DGT     +T VVK + NP W+  A+ ++ LCNGD  R + A+VYDWDRDG+HD+IGEFT +
Sbjct:  177 DPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQAIAIPVRALCNGDFNRAIKAEVYDWDRDGSHDFIGEFTTS 249
[Close]
BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A6G1R5Y8_9GRUI (Copine 8 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A6G1R5Y8_9GRUI)

HSP 1 Score: 83.6 bits (205), Expect = 1.170e-18
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL  +R+  DG+     +T VVK + NP W+   + ++ LCNGD  R +  +VYDWDRDG+HD+IGEFT +
Sbjct:   42 DPFLVFHRSNEDGSFTICHKTEVVKNTLNPVWQAFKISVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTS 114
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BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A4W5QD83_9TELE (C2 domain-containing protein n=1 Tax=Hucho hucho TaxID=62062 RepID=A0A4W5QD83_9TELE)

HSP 1 Score: 87.4 bits (215), Expect = 1.180e-18
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL   R+  DGT     +T VVK + NP W+  A+ ++ LCNGD  R + A+VYDWDRDG+HD+IGEFT +
Sbjct:   50 DPFLVFYRSNEDGTFTICHKTEVVKNTLNPVWQAIAIPVRALCNGDFDRTIKAEVYDWDRDGSHDFIGEFTTS 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: A0A8M1KU50_URSAR (copine-5-like n=1 Tax=Ursus arctos horribilis TaxID=116960 RepID=A0A8M1KU50_URSAR)

HSP 1 Score: 83.2 bits (204), Expect = 1.180e-18
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL   R+  DGT     +T V+K + NP W+  ++ ++ LCNGD  R +  +VYDWDRDG+HD+IGEFT +
Sbjct:   50 DPFLVFYRSNEDGTFTICHKTEVMKNTLNPVWQTFSIPVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTS 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: S4RAC4_PETMA (C2 domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RAC4_PETMA)

HSP 1 Score: 82.4 bits (202), Expect = 1.470e-18
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL   R+  DG+     +T VVK + NP W+  ++ ++ LCNGD  R +   VYDWDRDG+HD+IGEFT +
Sbjct:   21 DPFLVFYRSNEDGSFTISHKTEVVKNTLNPAWQPFSIPVRTLCNGDFDRTIKVDVYDWDRDGSHDFIGEFTTS 93
[Close]
BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Match: UPI00188E6427 (copine-5-like n=1 Tax=Talpa occidentalis TaxID=50954 RepID=UPI00188E6427)

HSP 1 Score: 83.2 bits (204), Expect = 1.540e-18
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:    1 DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRPLVAKVYDWDRDGTHDYIGEFTVT 219
            D FL   R+  DGT     +T V+K + NP W+  ++ ++ LCNGD  R +  +VYDWDRDG+HD+IGEFT +
Sbjct:   67 DPFLVFYRSNEDGTFTICHKTEVMKNTLNPVWQTFSIPVRALCNGDYDRTIKVEVYDWDRDGSHDFIGEFTTS 139
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113227.2758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6F9BIK6_9TELE1.560e-1947.95C2 domain-containing protein n=1 Tax=Coregonus sp.... [more]
A0A5C6MFI9_9TELE7.800e-1943.84Copine-5 n=1 Tax=Takifugu flavidus TaxID=433684 Re... [more]
UPI0009A42DC29.760e-1949.30copine-5-like n=1 Tax=Rhincodon typus TaxID=259920... [more]
A0A8J6EKL2_ELECQ9.950e-1946.58C2 domain-containing protein (Fragment) n=1 Tax=El... [more]
A0A673YT15_SALTR9.950e-1950.68Copine-5-like n=1 Tax=Salmo trutta TaxID=8032 RepI... [more]
A0A6G1R5Y8_9GRUI1.170e-1846.58Copine 8 (Fragment) n=2 Tax=Neognathae TaxID=8825 ... [more]
A0A4W5QD83_9TELE1.180e-1850.68C2 domain-containing protein n=1 Tax=Hucho hucho T... [more]
A0A8M1KU50_URSAR1.180e-1846.58copine-5-like n=1 Tax=Ursus arctos horribilis TaxI... [more]
S4RAC4_PETMA1.470e-1846.58C2 domain-containing protein n=1 Tax=Petromyzon ma... [more]
UPI00188E64271.540e-1846.58copine-5-like n=1 Tax=Talpa occidentalis TaxID=509... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113227contigM-pyrifera_M_contig113227:348..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.0
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog48698.ENSPFOP00000001049
Preferred nameCPNE5
Hectar predicted targeting categoryother localisation
GOsGO:0001558,GO:0005575,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0010975,GO:0010976,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030307,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0036477,GO:0040008,GO:0042995,GO:0043005,GO:0043025,GO:0044297,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045927,GO:0048518,GO:0048522,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0097458,GO:0120025,GO:0120035,GO:1903859,GO:1903861,GO:2000026
EggNOG free text desc.Copine V
EggNOG OGs38BYU@33154,3B953@33208,3CSWC@33213,485H3@7711,48VXQ@7742,49XTR@7898,KOG1327@1,KOG1327@2759
COG Functional cat.T
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.117179-CDS-M-pyrifera_M_contig113227:347..5661622815647.117179-CDS-M-pyrifera_M_contig113227:347..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113227 348..566 +
1692277503.6528978-CDS-M-pyrifera_M_contig113227:347..5661692277503.6528978-CDS-M-pyrifera_M_contig113227:347..566Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113227 348..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113227.2758.1prot_M-pyrifera_M_contig113227.2758.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113227 348..566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113227.2758.1

>prot_M-pyrifera_M_contig113227.2758.1 ID=prot_M-pyrifera_M_contig113227.2758.1|Name=mRNA_M-pyrifera_M_contig113227.2758.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
DGFLTLNRARADGTLVRVFETNVVKRSYNPKWEESAVDIQKLCNGDLRRP
LVAKVYDWDRDGTHDYIGEFTVT
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mRNA from alignment at M-pyrifera_M_contig113227:348..566+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113227.2758.1 ID=mRNA_M-pyrifera_M_contig113227.2758.1|Name=mRNA_M-pyrifera_M_contig113227.2758.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig113227:348..566+ (Macrocystis pyrifera P11B4 male)
GACGGCTTCCTCACGTTGAACCGCGCCCGCGCGGACGGCACGTTGGTGCG
CGTGTTCGAGACGAACGTGGTGAAGCGTTCGTACAACCCAAAGTGGGAGG
AGTCTGCGGTGGACATCCAGAAGCTGTGCAACGGCGACCTGCGGCGCCCG
CTGGTGGCCAAGGTGTACGACTGGGACCGCGACGGCACGCACGACTACAT
CGGCGAGTTCACGGTGACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113227:348..566+

>mRNA_M-pyrifera_M_contig113227.2758.1 ID=mRNA_M-pyrifera_M_contig113227.2758.1|Name=mRNA_M-pyrifera_M_contig113227.2758.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig113227:348..566+ (Macrocystis pyrifera P11B4 male)
GACGGCTTCCTCACGTTGAACCGCGCCCGCGCGGACGGCACGTTGGTGCG
CGTGTTCGAGACGAACGTGGTGAAGCGTTCGTACAACCCAAAGTGGGAGG
AGTCTGCGGTGGACATCCAGAAGCTGTGCAACGGCGACCTGCGGCGCCCG
CTGGTGGCCAAGGTGTACGACTGGGACCGCGACGGCACGCACGACTACAT
CGGCGAGTTCACGGTGACGGACGGCTTCCTCACGTTGAACCGCGCCCGCG
CGGACGGCACGTTGGTGCGCGTGTTCGAGACGAACGTGGTGAAGCGTTCG
TACAACCCAAAGTGGGAGGAGTCTGCGGTGGACATCCAGAAGCTGTGCAA
CGGCGACCTGCGGCGCCCGCTGGTGGCCAAGGTGTACGACTGGGACCGCG
ACGGCACGCACGACTACATCGGCGAGTTCACGGTGACG
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