mRNA_M-pyrifera_M_contig112779.2661.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112779.2661.1
Unique NamemRNA_M-pyrifera_M_contig112779.2661.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A7C1Y5X2_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1Y5X2_9GAMM)

HSP 1 Score: 184 bits (466), Expect = 5.860e-56
Identity = 85/119 (71.43%), Postives = 95/119 (79.83%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            RR AVK  IMD ++VVGVGNIYASEAL+ AG+HP+R AGR+   RY+ L  AIREVLA AIE GGTTLRDF +SDG PGYF  +L VYGR GEPCP CG PIRQ VIGQRSS+YCP CQ
Sbjct:  152 RRQAVKAFIMDSKVVVGVGNIYASEALFLAGIHPRRPAGRIGAARYDALAGAIREVLAAAIEAGGTTLRDFTQSDGRPGYFARELRVYGREGEPCPACGTPIRQEVIGQRSSYYCPRCQ 270
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A6N0HTN1_9GAMM (Formamidopyrimidine-DNA glycosylase n=2 Tax=Gammaproteobacteria incertae sedis TaxID=118884 RepID=A0A6N0HTN1_9GAMM)

HSP 1 Score: 181 bits (459), Expect = 6.520e-55
Identity = 83/120 (69.17%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQH 360
            RR AVK  IMDG++VVGVGNIYASE+L+RA +HP+ AAG++S TRY  L   I+EVL+EAI  GGTTLRDF  SDG+PGYF  QLNVYGRTGEPCP C  PI+Q  +GQRS+FYCP+CQH
Sbjct:  151 RRVAVKQFIMDGKVVVGVGNIYASESLFRARIHPRTAAGKISRTRYLALTETIKEVLSEAITQGGTTLRDFTGSDGKPGYFTQQLNVYGRTGEPCPLCATPIKQLTLGQRSTFYCPSCQH 270
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A523PEQ9_9PROT (Formamidopyrimidine-DNA glycosylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PEQ9_9PROT)

HSP 1 Score: 181 bits (459), Expect = 6.710e-55
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQH 360
            RRAA+KN IMD  IVVG+GNIYASEALYRAG+HPKRAAGR+   RY RLV A+R+VL EA+  GGTTLRDF  SDG+PGYFR +L VYGR GEPC      IRQ VIGQRSSF+CP CQH
Sbjct:  152 RRAAIKNFIMDAHIVVGIGNIYASEALYRAGIHPKRAAGRIGRERYGRLVMAVRDVLEEALAAGGTTLRDFANSDGKPGYFRRELKVYGRAGEPCDCRTGVIRQQVIGQRSSFFCPRCQH 271
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A5Q4F3A8_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A5Q4F3A8_9GAMM)

HSP 1 Score: 181 bits (458), Expect = 9.500e-55
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 1 
Query:    4 RAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            R A+K  IM+ ++VVGVGNIYASEAL+RAG+HP+R AGRVS+ R +RL AAIREVLA AIE GGTTLRDF  SDG PGYFR  L VYGR   PCPGCG P+RQ VIGQR+S++CP CQ
Sbjct:  153 RVAIKPFIMNARVVVGVGNIYASEALFRAGIHPRRPAGRVSLARMQRLAAAIREVLAAAIEAGGTTLRDFTDSDGRPGYFRQHLQVYGRADAPCPGCGAPLRQEVIGQRASYFCPRCQ 270
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A3D5DJF0_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DJF0_9GAMM)

HSP 1 Score: 179 bits (454), Expect = 3.820e-54
Identity = 85/119 (71.43%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            RRAAVKN IM+ ++VVGVGNIYASEAL+RA VHP RAAG++S  RY  +V A+REVL EA+++GGTTLRDFV+SDG+PGYFR+QL VYGR GEPC      IRQ VIGQRSSFYCP CQ
Sbjct:  152 RRAAVKNFIMNNRVVVGVGNIYASEALHRAKVHPNRAAGQISNLRYNAIVVAVREVLKEAVDLGGTTLRDFVRSDGKPGYFRVQLRVYGREGEPCTCANGIIRQVVIGQRSSFYCPRCQ 270
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: UPI0007323E6C (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Thiohalocapsa sp. ML1 TaxID=1431688 RepID=UPI0007323E6C)

HSP 1 Score: 179 bits (454), Expect = 3.820e-54
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            RRAAVK  IMD  +VVGVGNIYASEAL+RAG+HP R AGR+++ R+ERL A+I+ VLA AI  GGT+LRDFV+ +G PGYF   L VYGRTGEPCPGCG P+R   IGQRSSFYCP CQ
Sbjct:  152 RRAAVKTFIMDSHVVVGVGNIYASEALHRAGIHPARPAGRIALLRFERLAASIKTVLAAAIAEGGTSLRDFVQENGNPGYFARALRVYGRTGEPCPGCGAPVRTRRIGQRSSFYCPRCQ 270
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A1D8K4G6_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidihalobacter aeolianus TaxID=2792603 RepID=A0A1D8K4G6_9GAMM)

HSP 1 Score: 179 bits (453), Expect = 5.420e-54
Identity = 80/119 (67.23%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            RR+AVK L+MDG++VVGVGNIYASE+L+RAG+ P+RAAGR++  RY+ L   +REVL EAI  GGTTLRDFV+ DG PGYFR+ LNVYGR GEPCP CG  IR+AV+ QR++FYC  CQ
Sbjct:  152 RRSAVKALLMDGRVVVGVGNIYASESLFRAGIDPRRAAGRIAAARYDLLAERVREVLTEAIAAGGTTLRDFVREDGRPGYFRMSLNVYGRAGEPCPVCGTAIREAVLAQRNTFYCTRCQ 270
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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: UPI0019067DFC (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Thiohalocapsa halophila TaxID=69359 RepID=UPI0019067DFC)

HSP 1 Score: 178 bits (452), Expect = 7.670e-54
Identity = 83/119 (69.75%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            RRA VK  IMD  +VVGVGNIYASEAL+RAG+HP R AGR+++ RYERL A+I+ VLA AI  GGT+LRDFV+ DG PGYF   L VYGR G PCPGCG P+RQ  IGQRSSFYCP CQ
Sbjct:  152 RRAPVKTFIMDSHVVVGVGNIYASEALHRAGIHPHRPAGRIALPRYERLAASIKTVLAAAIAEGGTSLRDFVQEDGSPGYFARALQVYGRAGLPCPGCGEPVRQRRIGQRSSFYCPRCQ 270
[Close]
BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A3D5FDL2_9GAMM (Formamidopyrimidine-DNA glycosylase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3D5FDL2_9GAMM)

HSP 1 Score: 177 bits (450), Expect = 1.540e-53
Identity = 84/120 (70.00%), Postives = 96/120 (80.00%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQH 360
            RR A+KNLIMDG+IVVGVGNIYASEAL+RAG+HP RAAGRV + RY+RLV AIREVLA+AI  GGT+LRD+    GEPGYF   L VYGR GEPC  CG  I+  VIGQR+S+YC  CQH
Sbjct:  152 RRLAIKNLIMDGRIVVGVGNIYASEALFRAGIHPARAAGRVGLRRYQRLVQAIREVLADAIAAGGTSLRDYAGVTGEPGYFECSLKVYGRAGEPCVNCGGIIQHKVIGQRASYYCAHCQH 271
[Close]
BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: UPI001867B295 (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Microbulbifer taiwanensis TaxID=986746 RepID=UPI001867B295)

HSP 1 Score: 177 bits (448), Expect = 3.090e-53
Identity = 80/119 (67.23%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:    1 RRAAVKNLIMDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 357
            RR +VK LIMDG+IVVGVGNIYASE+L+ AG+ P +AAG +S  RY+RLV AI++VLA +IE GGTTLRDF+  DG+PGYF  QLNVYGR+GEPCP CGRP+R  V+GQR++F+C  CQ
Sbjct:  152 RRQSVKTLIMDGRIVVGVGNIYASESLFLAGIRPDKAAGSISRVRYQRLVDAIKQVLARSIEQGGTTLRDFIGGDGQPGYFAQQLNVYGRSGEPCPTCGRPVRDMVLGQRNTFFCSNCQ 270
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C1Y5X2_9GAMM5.860e-5671.43Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammap... [more]
A0A6N0HTN1_9GAMM6.520e-5569.17Formamidopyrimidine-DNA glycosylase n=2 Tax=Gammap... [more]
A0A523PEQ9_9PROT6.710e-5571.67Formamidopyrimidine-DNA glycosylase n=1 Tax=Proteo... [more]
A0A5Q4F3A8_9GAMM9.500e-5570.34Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammap... [more]
A0A3D5DJF0_9GAMM3.820e-5471.43Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammap... [more]
UPI0007323E6C3.820e-5469.75bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A1D8K4G6_9GAMM5.420e-5467.23Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidih... [more]
UPI0019067DFC7.670e-5469.75bifunctional DNA-formamidopyrimidine glycosylase/D... [more]
A0A3D5FDL2_9GAMM1.540e-5370.00Formamidopyrimidine-DNA glycosylase n=3 Tax=Gammap... [more]
UPI001867B2953.090e-5367.23bifunctional DNA-formamidopyrimidine glycosylase/D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112779contigM-pyrifera_M_contig112779:6..368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score165.6
Seed ortholog evalue1.3e-38
Seed eggNOG ortholog187272.Mlg_2649
Preferred namefpg
KEGG koko:K10563
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008270,GO:0008534,GO:0009987,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0019104,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901363
EggNOG free text desc.Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates
EggNOG OGs1MVM5@1224,1RP3J@1236,1WX0V@135613,COG0266@1,COG0266@2
EC3.2.2.23,4.2.99.18
COG Functional cat.L
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size363
Cds size336
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.4853678-UTR-M-pyrifera_M_contig112779:5..321622815641.4853678-UTR-M-pyrifera_M_contig112779:5..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112779 6..32 +
1692277500.9739485-UTR-M-pyrifera_M_contig112779:5..321692277500.9739485-UTR-M-pyrifera_M_contig112779:5..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112779 6..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.503218-CDS-M-pyrifera_M_contig112779:32..3681622815641.503218-CDS-M-pyrifera_M_contig112779:32..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112779 33..368 +
1692277500.9885132-CDS-M-pyrifera_M_contig112779:32..3681692277500.9885132-CDS-M-pyrifera_M_contig112779:32..368Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112779 33..368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112779.2661.1prot_M-pyrifera_M_contig112779.2661.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112779 33..368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112779.2661.1

>prot_M-pyrifera_M_contig112779.2661.1 ID=prot_M-pyrifera_M_contig112779.2661.1|Name=mRNA_M-pyrifera_M_contig112779.2661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAE
AIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQ
RSSFYCPTCQH*
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mRNA from alignment at M-pyrifera_M_contig112779:6..368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112779.2661.1 ID=mRNA_M-pyrifera_M_contig112779.2661.1|Name=mRNA_M-pyrifera_M_contig112779.2661.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig112779:6..368+ (Macrocystis pyrifera P11B4 male)
CGACGCGCGGCGGTGAAAAACCTGATCATGGATGGCCAGATCGTCGTCGG
GGTTGGCAACATCTATGCAAGCGAGGCGCTGTATCGCGCCGGCGTCCATC
CGAAACGCGCGGCCGGGCGGGTAAGCGTCACGCGCTACGAACGATTAGTC
GCCGCCATCCGTGAGGTTCTCGCCGAGGCGATTGAAGTGGGCGGAACGAC
GTTGCGTGATTTCGTCAAAAGCGATGGCGAACCCGGCTACTTTCGTCTGC
AACTGAACGTCTACGGGCGCACCGGAGAACCGTGCCCGGGCTGCGGCCGC
CCCATCCGACAGGCTGTGATCGGCCAGCGTTCGAGCTTTTATTGCCCCAC
CTGTCAGCATTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112779:6..368+

>mRNA_M-pyrifera_M_contig112779.2661.1 ID=mRNA_M-pyrifera_M_contig112779.2661.1|Name=mRNA_M-pyrifera_M_contig112779.2661.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig112779:6..368+ (Macrocystis pyrifera P11B4 male)
ATGGATGGCCAGATCGTCGTCGGGGTTGGCAACATCTATGCAAGCGAGGC
GCTGTATCGCGCCGGCGTCCATCCGAAACGCGCGGCCGGGCGGGTAAGCG
TCACGCGCTACGAACGATTAGTCGCCGCCATCCGTGAGGTTCTCGCCGAG
GCGATTGAAGTGGGCGGAACGACGTTGCGTGATTTCGTCAAAAGCGATGG
CGAACCCGGCTACTTTCGTCTGCAACTGAACGTCTACGGGCGCACCGGAG
AACCGTGCCCGGGCTGCGGCCGCCCCATCCGACAGGCTGTGATCGGCCAG
CGTTCGAGCTTTTATTGCCCCACCTGTCAGCATTAGATGGATGGCCAGAT
CGTCGTCGGGGTTGGCAACATCTATGCAAGCGAGGCGCTGTATCGCGCCG
GCGTCCATCCGAAACGCGCGGCCGGGCGGGTAAGCGTCACGCGCTACGAA
CGATTAGTCGCCGCCATCCGTGAGGTTCTCGCCGAGGCGATTGAAGTGGG
CGGAACGACGTTGCGTGATTTCGTCAAAAGCGATGGCGAACCCGGCTACT
TTCGTCTGCAACTGAACGTCTACGGGCGCACCGGAGAACCGTGCCCGGGC
TGCGGCCGCCCCATCCGACAGGCTGTGATCGGCCAGCGTTCGAGCTTTTA
TTGCCCCACCTGTCAGCATTAG
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