prot_M-pyrifera_M_contig112561.2618.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig112561.2618.1
Unique Nameprot_M-pyrifera_M_contig112561.2618.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length78
Homology
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BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Match: A0A6H5KXI6_9PHAE (BEACH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 6.730e-31
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MYPRSPDKYIRFGGPSGGVSFFQGTSVGAVSSSKASPDRLLSSHEALHLTPVTALASSEDGSLLLTGAVDGTCRLWAV 78
            M P+SPDKY+RFGGPS GVSFFQ    G  SSSKA+PDRLLSSHE+LHLT VTA A S DGSLLLTGA+DGTCRLW+V
Sbjct:  178 MLPKSPDKYLRFGGPSRGVSFFQTAGGGTASSSKATPDRLLSSHESLHLTAVTASACSVDGSLLLTGALDGTCRLWSV 255
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BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Match: D8LI41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI41_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.050e-29
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 0 
Query:    1 MYPRSPDKYIRFGGPSGGVSFFQGTSVGAVSSSKASPDRLLSSHEALHLTPVTALASSEDGSLLLTGAVDGTCRLWAV 78
            M P+SPDKY+RFGGPS GVSFFQ    G  SSSKA+PDRLLSSHE+LHLT VTA A S DGSLLLTGA+DGTCRLW+V
Sbjct: 1163 MLPKSPDKYLRFGGPSRGVSFFQTAGGGTASSSKATPDRLLSSHESLHLTAVTAAACSVDGSLLLTGALDGTCRLWSV 1240
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BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Match: A0A835YWR3_9STRA (BEACH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWR3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 5.790e-10
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 0 
Query:    7 DKYIRFGGPSGGVSFFQ-----GTSVGAVSSSKASPDRLLSSHEALHLTPVTALASSEDGSLLLTGAVDGTCRLWAV 78
            D+Y+RFGGPS GV+F+Q                A+PD LLS+H+ LH  P+T  A ++ G+ L TG  DG  R+W+V
Sbjct:  367 DEYVRFGGPSCGVAFYQIGXXXXXXXXXXXXXXAAPDALLSAHDGLHARPITCAAYADSGAALATGGGDGALRVWSV 443
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112561.2618.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXI6_9PHAE6.730e-3176.92BEACH domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LI41_ECTSI1.050e-2976.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YWR3_9STRA5.790e-1042.86BEACH domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 34..77
e-value: 6.9E-5
score: 32.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 48..76
e-value: 1.6E-6
score: 28.7
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 45..78
score: 12.48
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 5..78
e-value: 5.0E-7
score: 30.8
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 45..78
score: 11.708
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 44..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112561contigM-pyrifera_M_contig112561:148..381 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112561.2618.1mRNA_M-pyrifera_M_contig112561.2618.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig112561 148..381 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig112561.2618.1 ID=prot_M-pyrifera_M_contig112561.2618.1|Name=mRNA_M-pyrifera_M_contig112561.2618.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=78bp
MYPRSPDKYIRFGGPSGGVSFFQGTSVGAVSSSKASPDRLLSSHEALHLT
PVTALASSEDGSLLLTGAVDGTCRLWAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR011047Quinoprotein_ADH-like_supfam