mRNA_M-pyrifera_M_contig112462.2612.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A437QD36_9GAMM (DUF1499 domain-containing protein n=2 Tax=Neptunomonas TaxID=75687 RepID=A0A437QD36_9GAMM) HSP 1 Score: 56.6 bits (135), Expect = 2.350e-8 Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = 1
Query: 34 IAVLVLALGIG---FAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSS 165
IAVL+L +G+G F+ MAVQSR GKAPGL +GQL PCG +PNCVSS
Sbjct: 5 IAVLLL-IGLGLAAFSWMAVQSRGGKAPGLREGQLAPCGAQPNCVSS 50
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A2A4XLC2_9GAMM (Uncharacterized protein n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2A4XLC2_9GAMM) HSP 1 Score: 56.2 bits (134), Expect = 3.200e-8 Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHH 192
K+ LI I VL+LA + F ++ S+SG+APGLVDG L C DKPNCVSS +SD H
Sbjct: 2 KTALIVILVLLLAPVVIFFMLGFSSKSGEAPGLVDGHLANCPDKPNCVSS-ENISDVTH 59
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A484HJQ0_9DELT (Uncharacterized protein n=1 Tax=uncultured Desulfobacteraceae bacterium TaxID=218296 RepID=A0A484HJQ0_9DELT) HSP 1 Score: 56.2 bits (134), Expect = 3.700e-8 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
K LI++ L + LG G I+ SRSGKAPGL++G+L PC PNCV S + H+I
Sbjct: 2 KMALIALFALAVVLGAGLFILGAISRSGKAPGLLEGRLAPCPKAPNCVCSEEKGDAGHYI 61
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A6S6UEH2_9GAMM (Uncharacterized protein n=1 Tax=uncultured Thiotrichaceae bacterium TaxID=298394 RepID=A0A6S6UEH2_9GAMM) HSP 1 Score: 53.5 bits (127), Expect = 9.340e-8 Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
+++L+ + +L+LA+ I F I+ V+S+SG APGL G+L CG KPNCV S + + +I
Sbjct: 2 RTILLIVGLLILAVVIYFFILGVRSKSGTAPGLSAGELAQCGTKPNCVCSEHKDKNEFYI 61
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A2D6RQV9_9BURK (Uncharacterized protein n=1 Tax=Sutterellaceae bacterium TaxID=2026794 RepID=A0A2D6RQV9_9BURK) HSP 1 Score: 55.8 bits (133), Expect = 9.690e-8 Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1
Query: 1 RRVLVKSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
R VK L+S+ VL+ + I F + + S +G PGL +GQL PC +KPNCVSS + SD H I
Sbjct: 60 RGFYVKRALLSLIVLITLVIIVFFGLGLYSETGAPPGLANGQLAPCPNKPNCVSSESSPSDDHSI 124
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A4R1EP61_9GAMM (Uncharacterized protein (DUF1499 family) n=1 Tax=Cocleimonas flava TaxID=634765 RepID=A0A4R1EP61_9GAMM) HSP 1 Score: 52.8 bits (125), Expect = 6.530e-7 Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query: 16 KSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
K+ LI IA+LV+ F ++ S+ G APGLVDG+L C +KPNCVSS + H I
Sbjct: 2 KTALIIIAILVILGLASFFVLGKMSQKGIAPGLVDGKLSKCSEKPNCVSSEYQDDAEHFI 61
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A120GB80_9SPHN (Uncharacterized protein n=1 Tax=Erythrobacter sp. YT30 TaxID=1735012 RepID=A0A120GB80_9SPHN) HSP 1 Score: 52.4 bits (124), Expect = 7.940e-7 Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 10 LVKSLLISIAVLVL-ALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSS 165
++K++LI + VL L LG GFA + +S+SG APG+V+G L PC D PNCVSS
Sbjct: 1 MLKTILIIVFVLALIGLG-GFAYLGQKSKSGTAPGMVNGTLAPCPDSPNCVSS 52
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A1Q6DR51_9DELT (Uncharacterized protein n=1 Tax=Desulfobulbaceae bacterium DB1 TaxID=1920419 RepID=A0A1Q6DR51_9DELT) HSP 1 Score: 51.6 bits (122), Expect = 8.210e-7 Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 1
Query: 67 FAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSHHI 195
F ++AV SRSGKAPGL +G+L C D PNCV S + H I
Sbjct: 19 FIVLAVMSRSGKAPGLTEGRLAKCPDTPNCVCSEQKDDTRHFI 61
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A074MX89_ERYLO (Uncharacterized protein n=2 Tax=Erythrobacter longus TaxID=1044 RepID=A0A074MX89_ERYLO) HSP 1 Score: 51.6 bits (122), Expect = 1.470e-6 Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1
Query: 64 GFAIMAVQSRSGKAPGLVDGQLKPCGDKPNCVSS 165
GF ++ + S++G+APGLV GQL PC D PNCVSS
Sbjct: 15 GFFVLGLMSQNGEAPGLVQGQLAPCPDSPNCVSS 48
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Match: A0A2S7K9V4_9PROT (DUF1499 domain-containing protein n=2 Tax=Marinicaulis flavus TaxID=2058213 RepID=A0A2S7K9V4_9PROT) HSP 1 Score: 50.8 bits (120), Expect = 2.160e-6 Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1
Query: 76 MAVQSRSGKAPGLVDGQLKPCGDKPNCVSSMARVSDSH 189
+A++S+SG +PGLV+G+L PC PNCVSS A +SH
Sbjct: 2 LALKSKSGASPGLVEGRLAPCPSSPNCVSSEAGAPESH 39 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112462.2612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112462.2612.1 >prot_M-pyrifera_M_contig112462.2612.1 ID=prot_M-pyrifera_M_contig112462.2612.1|Name=mRNA_M-pyrifera_M_contig112462.2612.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=65bp RRVLVKSLLISIAVLVLALGIGFAIMAVQSRSGKAPGLVDGQLKPCGDKPback to top mRNA from alignment at M-pyrifera_M_contig112462:17..211- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112462.2612.1 ID=mRNA_M-pyrifera_M_contig112462.2612.1|Name=mRNA_M-pyrifera_M_contig112462.2612.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig112462:17..211- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112462:17..211- >mRNA_M-pyrifera_M_contig112462.2612.1 ID=mRNA_M-pyrifera_M_contig112462.2612.1|Name=mRNA_M-pyrifera_M_contig112462.2612.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig112462:17..211- (Macrocystis pyrifera P11B4 male)back to top |