mRNA_M-pyrifera_M_contig11245.2607.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11245.2607.1
Unique NamemRNA_M-pyrifera_M_contig11245.2607.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: D8LTQ6_ECTSI (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTQ6_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 7.530e-33
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            F  + ++QSYGSRCVRPPIIHGDV+RP+AMTTREFKVAQ LT RPVKGMLTGPVTILNWSFPRLDVSRKEQ
Sbjct:  528 FTSNGWVQSYGSRCVRPPIIHGDVSRPTAMTTREFKVAQELTLRPVKGMLTGPVTILNWSFPRLDVSRKEQ 598
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BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: A0A7S3UAB9_9CHLO (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UAB9_9CHLO)

HSP 1 Score: 122 bits (306), Expect = 1.460e-30
Identity = 56/66 (84.85%), Postives = 63/66 (95.45%), Query Frame = 1 
Query:   16 FLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            ++QSYGSRCVRPPII+GDV+RP+ MT REFKVAQALTS+PVKGMLTGPVTILNWSFPR D+SRKEQ
Sbjct:  491 WVQSYGSRCVRPPIIYGDVSRPAPMTVREFKVAQALTSKPVKGMLTGPVTILNWSFPRKDISRKEQ 556
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BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: Q2JXT0_SYNJA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q2JXT0_SYNJA)

HSP 1 Score: 117 bits (294), Expect = 6.190e-29
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            F    ++QSYGSRCVRPPI++GDV+RP  MT REFKVAQ+LT +PVKGMLTGPVT+LNWSFPR+DVSR+EQ
Sbjct:  493 FTEHGWVQSYGSRCVRPPILYGDVSRPRPMTVREFKVAQSLTQKPVKGMLTGPVTMLNWSFPRVDVSRREQ 563
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: B7G1X4_PHATC (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1X4_PHATC)

HSP 1 Score: 116 bits (291), Expect = 1.580e-28
Identity = 54/71 (76.06%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            F    ++QS+GSRCVRPPII  D+ RP AMT REFKVAQ LTS+PVKGMLTGP+TILNWSFPR+DVSRKEQ
Sbjct:  501 FSEHGWVQSFGSRCVRPPIIWSDIQRPKAMTVREFKVAQDLTSKPVKGMLTGPITILNWSFPRVDVSRKEQ 571
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: A0A357A445_9CYAN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Cyanobacteria bacterium UBA11691 TaxID=2055778 RepID=A0A357A445_9CYAN)

HSP 1 Score: 115 bits (288), Expect = 4.020e-28
Identity = 51/66 (77.27%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:   16 FLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            ++QSYGSRCVRPPII+GDV+RP  MT REF VAQALT +PVKGMLTGP+TILNWSFPR D+SR +Q
Sbjct:  497 WVQSYGSRCVRPPIIYGDVSRPQPMTVREFNVAQALTKKPVKGMLTGPITILNWSFPRADISRSDQ 562
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: A0A1Q4R8S4_9CYAN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Limnothrix rosea IAM M-220 TaxID=454133 RepID=A0A1Q4R8S4_9CYAN)

HSP 1 Score: 115 bits (288), Expect = 4.020e-28
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            F  + ++QSYGSR VRPPII GDVARP  MT REFKVAQALT +PVKGMLTGPVTILNWSFPR D+SR+EQ
Sbjct:  493 FTTNGWVQSYGSRYVRPPIIFGDVARPQPMTVREFKVAQALTEKPVKGMLTGPVTILNWSFPRTDISRQEQ 563
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: A0A8K1CCI8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCI8_PYTOL)

HSP 1 Score: 114 bits (285), Expect = 1.030e-27
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQV-SLLLC 231
            F  + ++QSYGSRCVRPP+I  D+ RP AMT REF VAQ+ T++PVKGMLTGPVTILNWSFPR D+SRKEQ   L LC
Sbjct:  521 FTQNGWVQSYGSRCVRPPVIFADLERPEAMTVREFVVAQSFTTKPVKGMLTGPVTILNWSFPRKDISRKEQAFQLALC 598
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: A0A2D4BTP4_PYTIN (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTP4_PYTIN)

HSP 1 Score: 114 bits (285), Expect = 1.030e-27
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQV-SLLLC 231
            F  + ++QSYGSRCVRPP+I  D+ RP AMT REF VAQ+ TS+PVKGMLTGPVTILNWSFPR D+SRK+Q   L LC
Sbjct:  527 FTQNGWVQSYGSRCVRPPVIFADLERPDAMTVREFVVAQSFTSKPVKGMLTGPVTILNWSFPRKDISRKDQAFQLALC 604
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: UPI001882BF54 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=2 Tax=Phormidium sp. LEGE 05292 TaxID=2777964 RepID=UPI001882BF54)

HSP 1 Score: 113 bits (282), Expect = 2.550e-27
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQ 213
            F  + ++QSYGSR VRPPII+GDV RP  MT REF+VAQALT +PVKGMLTGP+TILNWSFPR D+SR+EQ
Sbjct:  441 FTENGWVQSYGSRYVRPPIIYGDVVRPQPMTVREFQVAQALTEKPVKGMLTGPITILNWSFPRADLSRQEQ 511
[Close]
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Match: G4YK03_PHYSP (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase n=25 Tax=Peronosporaceae TaxID=4777 RepID=G4YK03_PHYSP)

HSP 1 Score: 112 bits (281), Expect = 3.570e-27
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:    1 FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGMLTGPVTILNWSFPRLDVSRKEQV-SLLLC 231
            F  + ++QSYGSRCVRPPII  D+ RP+ MT REF VAQ+ TS+PVKGMLTGPVTILNWSFPR D+SRK+Q   L LC
Sbjct:  516 FTQNGWVQSYGSRCVRPPIIFADLERPADMTVREFVVAQSFTSKPVKGMLTGPVTILNWSFPRKDISRKDQAFQLALC 593
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11245.2607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTQ6_ECTSI7.530e-3385.925-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A7S3UAB9_9CHLO1.460e-3084.855-methyltetrahydropteroyltriglutamate--homocystein... [more]
Q2JXT0_SYNJA6.190e-2974.655-methyltetrahydropteroyltriglutamate--homocystein... [more]
B7G1X4_PHATC1.580e-2876.065-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A357A445_9CYAN4.020e-2877.275-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A1Q4R8S4_9CYAN4.020e-2877.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A8K1CCI8_PYTOL1.030e-2769.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BTP4_PYTIN1.030e-2769.235-methyltetrahydropteroyltriglutamate--homocystein... [more]
UPI001882BF542.550e-2773.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
G4YK03_PHYSP3.570e-2769.235-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11245contigM-pyrifera_M_contig11245:9505..9756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.8
Seed ortholog evalue6e-28
Seed eggNOG ortholog2880.D8LTQ6
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00549
KEGG ReactionR04405,R09365
KEGG Pathwayko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230
KEGG ModuleM00017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
EggNOG OGsCOG0620@1,KOG2263@2759
EC2.1.1.14
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s3_g10761_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.7513509-CDS-M-pyrifera_M_contig11245:9504..97561622815638.7513509-CDS-M-pyrifera_M_contig11245:9504..9756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11245 9505..9756 -
1692277499.7333279-CDS-M-pyrifera_M_contig11245:9504..97561692277499.7333279-CDS-M-pyrifera_M_contig11245:9504..9756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11245 9505..9756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11245.2607.1prot_M-pyrifera_M_contig11245.2607.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11245 9505..9756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11245.2607.1

>prot_M-pyrifera_M_contig11245.2607.1 ID=prot_M-pyrifera_M_contig11245.2607.1|Name=mRNA_M-pyrifera_M_contig11245.2607.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=84bp
FPHSFFLQSYGSRCVRPPIIHGDVARPSAMTTREFKVAQALTSRPVKGML
TGPVTILNWSFPRLDVSRKEQVSLLLCHFAPLK*
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mRNA from alignment at M-pyrifera_M_contig11245:9505..9756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11245.2607.1 ID=mRNA_M-pyrifera_M_contig11245.2607.1|Name=mRNA_M-pyrifera_M_contig11245.2607.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=252bp|location=Sequence derived from alignment at M-pyrifera_M_contig11245:9505..9756- (Macrocystis pyrifera P11B4 male)
TTTCCTCACTCTTTTTTCCTCCAGTCCTACGGAAGCCGGTGCGTCCGTCC
CCCGATCATCCACGGGGATGTGGCCCGCCCCAGCGCGATGACCACGAGGG
AGTTCAAGGTGGCCCAGGCGTTGACGTCCCGCCCTGTTAAGGGGATGCTT
ACGGGCCCCGTGACCATCCTGAACTGGTCTTTCCCCCGCCTCGACGTATC
TCGCAAGGAGCAGGTAAGTTTGCTCCTTTGCCACTTTGCACCTCTTAAAT
AG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11245:9505..9756-

>mRNA_M-pyrifera_M_contig11245.2607.1 ID=mRNA_M-pyrifera_M_contig11245.2607.1|Name=mRNA_M-pyrifera_M_contig11245.2607.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=504bp|location=Sequence derived from alignment at M-pyrifera_M_contig11245:9505..9756- (Macrocystis pyrifera P11B4 male)
TTTCCTCACTCTTTTTTCCTCCAGTCCTACGGAAGCCGGTGCGTCCGTCC
CCCGATCATCCACGGGGATGTGGCCCGCCCCAGCGCGATGACCACGAGGG
AGTTCAAGGTGGCCCAGGCGTTGACGTCCCGCCCTGTTAAGGGGATGCTT
ACGGGCCCCGTGACCATCCTGAACTGGTCTTTCCCCCGCCTCGACGTATC
TCGCAAGGAGCAGGTAAGTTTGCTCCTTTGCCACTTTGCACCTCTTAAAT
AGTTTCCTCACTCTTTTTTCCTCCAGTCCTACGGAAGCCGGTGCGTCCGT
CCCCCGATCATCCACGGGGATGTGGCCCGCCCCAGCGCGATGACCACGAG
GGAGTTCAAGGTGGCCCAGGCGTTGACGTCCCGCCCTGTTAAGGGGATGC
TTACGGGCCCCGTGACCATCCTGAACTGGTCTTTCCCCCGCCTCGACGTA
TCTCGCAAGGAGCAGGTAAGTTTGCTCCTTTGCCACTTTGCACCTCTTAA
ATAG
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