mRNA_M-pyrifera_M_contig112419.2595.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112419.2595.1
Unique NamemRNA_M-pyrifera_M_contig112419.2595.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: C1C4H9_LITCT (Sentrin-specific protease 8 n=3 Tax=Ranidae TaxID=8397 RepID=C1C4H9_LITCT)

HSP 1 Score: 84.3 bits (207), Expect = 3.790e-17
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   43 RETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARKGPRQRNGSDCGVFVLATAEFVCRLY 360
            +E L+P+  P  +L+LLPVNDN    +AGG+HW+LLAYL +      FDS PG+ +  +   AK  L  L G +   Q  K P Q N  DCG++V+  AE +C  Y
Sbjct:   78 KEFLQPLELPNKDLVLLPVNDNAGS-AAGGTHWSLLAYLRRFSGFLHFDSAPGTNAPHANRMAK-NLGMLLGGNPHCQEEKAPVQHNSYDCGMYVVCVAEALCEQY 181          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: UPI000854439D (sentrin-specific protease 8 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854439D)

HSP 1 Score: 83.6 bits (205), Expect = 6.390e-17
Identity = 44/106 (41.51%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   43 RETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARKGPRQRNGSDCGVFVLATAEFVCRLY 360
            +E L+P+  P  +L+LLPVNDN     AGG+HW+LLAYL + +    FDS PG+ +  +   AK  L  L   +   Q  K P Q N  DCG++V+  AE +C  Y
Sbjct:   70 KEFLQPLELPNKDLVLLPVNDNAGS-EAGGTHWSLLAYLRRFQGFLHFDSAPGTNAPHAKRMAK-NLSLLLSDNPHYQEEKAPVQHNSYDCGMYVICVAEALCEQY 173          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: A0A8J6FMZ6_ELECQ (ULP_PROTEASE domain-containing protein n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6FMZ6_ELECQ)

HSP 1 Score: 82.4 bits (202), Expect = 2.410e-16
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   46 ETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARKGPRQRNGSDCGVFVLATAEFVCRLYRR 366
            E L+P+  P+ +L+LLPVNDN   + AGGSHW+LLAYL   R+   +DS PG+ +  +   AK  L+ L   +   +  + P Q N  DCG++V+  A+ +C  Y R
Sbjct:   94 EFLKPLDLPQKDLVLLPVNDNAGTV-AGGSHWSLLAYLRSVREFLHYDSAPGTNAPHARLVAK-NLNGLLDGNPRYREEEAPAQHNSYDCGMYVVCVAQALCEQYFR 198          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: D2UYS9_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UYS9_NAEGR)

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-16
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 1
Query:   40 LRETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFG-RDSTLQARKGPRQRNGSDCGVFVLATAEFVCRLYRRERSLETLSDSALHVAFERTSTHDMRNALRQLI 462
            ++ TL  +   +  L+  PV DNTD  S+GG+HW+LL + +   K ++FDS+ GS +  +A     K+   FG + S L   K P+Q+NG DCG++VLA +E++            LSD+ +      +    +R  +  LI
Sbjct:   77 IKNTLHSLNAKDKKLVFFPVTDNTDISSSGGTHWSLLVFESNSGKFYYFDSM-GSMNKSAAKYLASKVAPYFGVKASNLHIAKAPQQKNGYDCGIYVLAMSEYIAE--------HGLSDAQIESEITPSKATQLRKVILDLI 209          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: B3RIN5_TRIAD (ULP_PROTEASE domain-containing protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3RIN5_TRIAD)

HSP 1 Score: 80.9 bits (198), Expect = 8.790e-16
Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   31 VLTLRETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTL---QARKGPRQRNGSDCGVFVLATAEFVCRLYRRERSLETLSD 393
            VL     L+ +   +  LI LPVND+     AGGSHWTLL Y+         DS+  S ++ SA     KLD +    S     + + GPRQ NG DCG++V+   E +C+ Y+ E  + +++D
Sbjct:   72 VLDSEFVLDSLNLSKKELIFLPVNDHNKVTEAGGSHWTLLIYIRPSNCYLHMDSLCTSSNLQSAKITAYKLDQVLKYSSNTNFTEIKNGPRQVNGYDCGMYVICEIESICKKYKSENDIGSITD 195          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: A0A835Y5V0_9CHLO (ULP_PROTEASE domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y5V0_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.170e-15
Identity = 50/114 (43.86%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   46 ETLEPILKPEVNLILLPVNDNTDPL-SAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLD-ALFGRDST----LQARKGPRQRNGSDCGVFVLATAEFVCRLYRRE 369
            E L P+      L+L  VNDNTDP  +AGGSHW+LLAY         +DS PGSG+  +A +    +  AL GR S     +Q    PRQ NG DCGV+VLA A  +C  +  E
Sbjct:   83 EVLAPLKPASRGLVLFAVNDNTDPSRAAGGSHWSLLAYHRPSNTLRHYDSSPGSGNEPNARRLAAAVGPALAGRSSPAPLLVQVGAMPRQVNGHDCGVYVLAMARALCEWWVEE 196          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: A0A835Y548_9CHLO (ULP_PROTEASE domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y548_9CHLO)

HSP 1 Score: 81.3 bits (199), Expect = 1.290e-15
Identity = 50/114 (43.86%), Postives = 63/114 (55.26%), Query Frame = 1
Query:   46 ETLEPILKPEVNLILLPVNDNTDPL-SAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLD-ALFGRDST----LQARKGPRQRNGSDCGVFVLATAEFVCRLYRRE 369
            E L P+      L+L  VNDNTDP  +AGGSHW+LLAY         +DS PGSG+  +A +    +  AL GR S     +Q    PRQ NG DCGV+VLA A  +C  +  E
Sbjct:   90 EVLAPLKPASRGLVLFAVNDNTDPSRAAGGSHWSLLAYHRPSNTLRHYDSSPGSGNEPNARRLAAAVGPALAGRSSPAPLLVQVGAMPRQVNGHDCGVYVLAMARALCEWWVEE 203          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: UPI001ABDFAA9 (sentrin-specific protease 8 n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABDFAA9)

HSP 1 Score: 80.1 bits (196), Expect = 1.340e-15
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   43 RETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARKGPRQRNGSDCGVFVLATAEFVCRLYRR 366
            RE LEP+   +  L+LLPVNDN     AGG+HW+LLAYL   R+   +DS PG+ +  +   AK  L +L   +   +  + P Q N  DCG++V+  A+ +C  Y R
Sbjct:   70 REFLEPLELLKKELVLLPVNDNAGT-EAGGTHWSLLAYLRSVREFLHYDSAPGTNAPHARLMAK-NLSSLLVGNPCYREEEAPAQHNSYDCGMYVVCVAQALCEQYFR 175          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: L7MUH7_XENTR (LOC100145737 protein n=4 Tax=Xenopus TaxID=8353 RepID=L7MUH7_XENTR)

HSP 1 Score: 79.0 bits (193), Expect = 3.750e-15
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   52 LEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARKGPRQRNGSDCGVFVLATAE 342
            LEP+  P   L+L+PVNDNT P  AGG+HW+LLAY+ +      +DS PG+ +  +   AK  LD L G     +    P Q N  DCG++V+  AE
Sbjct:   73 LEPLDLPSKELVLIPVNDNTGP-EAGGTHWSLLAYVRRYTVFLHYDSSPGTNAPHARLMAK-NLDVLLGGKQNYREEDAPVQHNSYDCGMYVVCVAE 167          
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Match: A0A0D3ED04_BRAOL (ULP_PROTEASE domain-containing protein n=3 Tax=Brassica TaxID=3705 RepID=A0A0D3ED04_BRAOL)

HSP 1 Score: 76.3 bits (186), Expect = 3.250e-14
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    1 VFFMNEYCEDVLTLRETLEPILKPEVNLILLPVNDNTD-PLSAGGSHWTLLAYLAKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARK---GPRQRNGSDCGVFVLATAEFVCRLY 360
            + F    C D  +L++ ++P+   ++NL++LPVNDN +  L  GG HW LL Y  KE  SFF  +     +  +A +   K  +LF  D     R+    P+Q+NG DCGV +LATA+ +C+ +
Sbjct:   37 IAFWISNCPDAESLKDFMKPLRLLDINLVILPVNDNLNVELEEGGLHWILLVYY-KETNSFFHHAYFMGANQWNARQLY-KAVSLFVSDGDAAFRECGDTPQQKNGYDCGVHLLATAQVICKWF 158          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112419.2595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C1C4H9_LITCT3.790e-1742.45Sentrin-specific protease 8 n=3 Tax=Ranidae TaxID=... [more]
UPI000854439D6.390e-1741.51sentrin-specific protease 8 n=1 Tax=Nanorana parke... [more]
A0A8J6FMZ6_ELECQ2.410e-1640.19ULP_PROTEASE domain-containing protein n=2 Tax=Ele... [more]
D2UYS9_NAEGR3.600e-1632.39Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
B3RIN5_TRIAD8.790e-1635.48ULP_PROTEASE domain-containing protein n=2 Tax=Tri... [more]
A0A835Y5V0_9CHLO1.170e-1543.86ULP_PROTEASE domain-containing protein n=1 Tax=Eda... [more]
A0A835Y548_9CHLO1.290e-1543.86ULP_PROTEASE domain-containing protein n=1 Tax=Eda... [more]
UPI001ABDFAA91.340e-1539.81sentrin-specific protease 8 n=2 Tax=Bufo TaxID=838... [more]
L7MUH7_XENTR3.750e-1542.27LOC100145737 protein n=4 Tax=Xenopus TaxID=8353 Re... [more]
A0A0D3ED04_BRAOL3.250e-1436.29ULP_PROTEASE domain-containing protein n=3 Tax=Bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112419contigM-pyrifera_M_contig112419:68..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.4
Seed ortholog evalue2e-13
Seed eggNOG ortholog218851.Aquca_027_00117.1
KEGG koko:K08597
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0016787,GO:0019538,GO:0019783,GO:0019784,GO:0043170,GO:0044238,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protease
EggNOG OGs37SPH@33090,3GEC0@35493,COG2828@1,KOG3246@2759
EC3.4.22.68
COG Functional cat.S
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Exons2
Model size462
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112419.2595.1prot_M-pyrifera_M_contig112419.2595.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112419 68..576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.0177996-CDS-M-pyrifera_M_contig112419:67..3891622815638.0177996-CDS-M-pyrifera_M_contig112419:67..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112419 68..389 -
1692277499.3939643-CDS-M-pyrifera_M_contig112419:67..3891692277499.3939643-CDS-M-pyrifera_M_contig112419:67..389Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112419 68..389 -
1622815638.0365417-CDS-M-pyrifera_M_contig112419:445..5761622815638.0365417-CDS-M-pyrifera_M_contig112419:445..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112419 446..576 -
1692277499.4062645-CDS-M-pyrifera_M_contig112419:445..5761692277499.4062645-CDS-M-pyrifera_M_contig112419:445..576Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112419 446..576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815638.0480967-UTR-M-pyrifera_M_contig112419:576..5851622815638.0480967-UTR-M-pyrifera_M_contig112419:576..585Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112419 577..585 -
1692277499.4169707-UTR-M-pyrifera_M_contig112419:576..5851692277499.4169707-UTR-M-pyrifera_M_contig112419:576..585Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112419 577..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112419.2595.1

>prot_M-pyrifera_M_contig112419.2595.1 ID=prot_M-pyrifera_M_contig112419.2595.1|Name=mRNA_M-pyrifera_M_contig112419.2595.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MNEYCEDVLTLRETLEPILKPEVNLILLPVNDNTDPLSAGGSHWTLLAYL
AKERKSFFFDSIPGSGSMLSATKAKGKLDALFGRDSTLQARKGPRQRNGS
DCGVFVLATAEFVCRLYRRERSLETLSDSALHVAFERTSTHDMRNALRQL
I
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mRNA from alignment at M-pyrifera_M_contig112419:68..585-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112419.2595.1 ID=mRNA_M-pyrifera_M_contig112419.2595.1|Name=mRNA_M-pyrifera_M_contig112419.2595.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=518bp|location=Sequence derived from alignment at M-pyrifera_M_contig112419:68..585- (Macrocystis pyrifera P11B4 male)
GTGTTCTTCATGAATGAGTACTGCGAGGATGTGCTCACTCTTCGAGAGAC CCTCGAACCCATCCTTAAACCCGAGGTCAACCTTATCCTGCTTCCCGTCA ATGACAACACAGACCCCCTATCAGCGGGAGGCTCACATTGGTAACCTCCA CCCCGCGTTGCAGCGCAATGCCGGCCACTGGCTCACGTTCACGCAGGACG CTCCTGGCATATCTGGCGAAGGAGAGGAAGAGTTTCTTCTTCGACTCAAT CCCCGGGAGTGGAAGCATGCTGTCTGCAACCAAGGCCAAGGGGAAGCTGG ATGCCCTCTTCGGGAGGGACAGCACACTGCAGGCCAGGAAAGGGCCCCGC CAGCGGAACGGCAGCGACTGTGGGGTATTCGTTTTGGCCACTGCAGAGTT TGTGTGTAGGTTGTACAGGAGAGAGCGCTCTCTTGAGACACTATCGGACT CTGCATTGCATGTGGCCTTTGAGCGGACGAGCACACACGACATGAGGAAT GCGCTCCGACAGCTCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112419:68..585-

>mRNA_M-pyrifera_M_contig112419.2595.1 ID=mRNA_M-pyrifera_M_contig112419.2595.1|Name=mRNA_M-pyrifera_M_contig112419.2595.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig112419:68..585- (Macrocystis pyrifera P11B4 male)
ATGAATGAGTACTGCGAGGATGTGCTCACTCTTCGAGAGACCCTCGAACC
CATCCTTAAACCCGAGGTCAACCTTATCCTGCTTCCCGTCAATGACAACA
CAGACCCCCTATCAGCGGGAGGCTCACATTGATGAATGAGTACTGCGAGG
ATGTGCTCACTCTTCGAGAGACCCTCGAACCCATCCTTAAACCCGAGGTC
AACCTTATCCTGCTTCCCGTCAATGACAACACAGACCCCCTATCAGCGGG
AGGCTCACATTGGACGCTCCTGGCATATCTGGCGAAGGAGAGGAAGAGTT
TCTTCTTCGACTCAATCCCCGGGAGTGGAAGCATGCTGTCTGCAACCAAG
GCCAAGGGGAAGCTGGATGCCCTCTTCGGGAGGGACAGCACACTGCAGGC
CAGGAAAGGGCCCCGCCAGCGGAACGGCAGCGACTGTGGGGTATTCGTTT
TGGCCACTGCAGAGTTTGTGTGTAGGTTGTACAGGAGAGAGCGCTCTCTT
GAGACACTATCGGACTCTGCATTGCATGTGGCCTTTGAGCGGACGAGCAC
ACACGACATGAGGAATGCGCTCCGACAGCTCATCGACGCTCCTGGCATAT
CTGGCGAAGGAGAGGAAGAGTTTCTTCTTCGACTCAATCCCCGGGAGTGG
AAGCATGCTGTCTGCAACCAAGGCCAAGGGGAAGCTGGATGCCCTCTTCG
GGAGGGACAGCACACTGCAGGCCAGGAAAGGGCCCCGCCAGCGGAACGGC
AGCGACTGTGGGGTATTCGTTTTGGCCACTGCAGAGTTTGTGTGTAGGTT
GTACAGGAGAGAGCGCTCTCTTGAGACACTATCGGACTCTGCATTGCATG
TGGCCTTTGAGCGGACGAGCACACACGACATGAGGAATGCGCTCCGACAG
CTCATC
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