mRNA_M-pyrifera_M_contig112308.2580.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112308.2580.1
Unique NamemRNA_M-pyrifera_M_contig112308.2580.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112308.2580.1 vs. uniprot
Match: A0A842ME85_9ARCH (Class I SAM-dependent methyltransferase n=1 Tax=Candidatus Methanosuratincola sp. TaxID=2495426 RepID=A0A842ME85_9ARCH)

HSP 1 Score: 54.3 bits (129), Expect = 1.540e-6
Identity = 28/74 (37.84%), Postives = 43/74 (58.11%), Query Frame = 1 
Query:   43 TLAALRGLTRPGGLVLVGEEFYHRAPDAELQALLGGDQTDFTFGFDDQLALAAEHGLEVVHALASTEAELRAYD 264
            TL AL+ +T+PGGL+LVGE F+ + PD E        + ++T    D + L    GL  ++ALAST+ +   Y+
Sbjct:  124 TLKALKDMTKPGGLLLVGEPFWLKEPDPEYLRAESLQKEEYTGSHQDNVRLGEACGLSCIYALASTKEDFDHYE 197
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BLAST of mRNA_M-pyrifera_M_contig112308.2580.1 vs. uniprot
Match: A0A524FVB1_THOAR (Class I SAM-dependent methyltransferase n=1 Tax=Thorarchaeota archaeon (strain OWC) TaxID=2053491 RepID=A0A524FVB1_THOAR)

HSP 1 Score: 50.1 bits (118), Expect = 5.240e-5
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:   22 VLGDRAATLAALRGLTRPGGLVLVGEEFYHRAPDAE-LQALLGGDQTDFTFGFDDQLALAAEHGLEVVHALASTEAELRAYD 264
            V  D   TL AL+ +TRPGGLV+VGE F+ + PD E L+A   G   DF+   ++ +    E GL  ++ L S + +   Y+
Sbjct:  117 VFEDHIGTLRALKKMTRPGGLVIVGEPFWLKEPDTEYLEA--AGMTRDFSRSHEENVYQGEEIGLSCLYTLVSNKDDWDHYE 196
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112308.2580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A842ME85_9ARCH1.540e-637.84Class I SAM-dependent methyltransferase n=1 Tax=Ca... [more]
A0A524FVB1_THOAR5.240e-537.80Class I SAM-dependent methyltransferase n=1 Tax=Th... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112308contigM-pyrifera_M_contig112308:6..299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.1014192-CDS-M-pyrifera_M_contig112308:5..2991622815637.1014192-CDS-M-pyrifera_M_contig112308:5..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112308 6..299 -
1692277498.9584014-CDS-M-pyrifera_M_contig112308:5..2991692277498.9584014-CDS-M-pyrifera_M_contig112308:5..299Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112308 6..299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112308.2580.1prot_M-pyrifera_M_contig112308.2580.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112308 6..299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112308.2580.1

>prot_M-pyrifera_M_contig112308.2580.1 ID=prot_M-pyrifera_M_contig112308.2580.1|Name=mRNA_M-pyrifera_M_contig112308.2580.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
GVPASTEVLGDRAATLAALRGLTRPGGLVLVGEEFYHRAPDAELQALLGG
DQTDFTFGFDDQLALAAEHGLEVVHALASTEAELRAYDGAFHDAIRAF
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mRNA from alignment at M-pyrifera_M_contig112308:6..299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112308.2580.1 ID=mRNA_M-pyrifera_M_contig112308.2580.1|Name=mRNA_M-pyrifera_M_contig112308.2580.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig112308:6..299- (Macrocystis pyrifera P11B4 male)
GGTGTGCCAGCCTCGACCGAGGTGCTCGGCGATCGCGCCGCGACCCTGGC
TGCGCTCCGTGGCCTCACCCGCCCCGGCGGCCTGGTCCTGGTCGGCGAGG
AGTTCTACCACCGCGCGCCGGACGCCGAGCTGCAGGCGCTGCTCGGCGGG
GACCAGACCGACTTCACGTTCGGCTTCGACGACCAGCTCGCCCTCGCCGC
GGAGCACGGGCTCGAAGTCGTGCACGCCCTCGCCAGCACCGAGGCCGAGC
TGCGCGCCTACGACGGCGCCTTCCACGACGCCATCCGCGCCTTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112308:6..299-

>mRNA_M-pyrifera_M_contig112308.2580.1 ID=mRNA_M-pyrifera_M_contig112308.2580.1|Name=mRNA_M-pyrifera_M_contig112308.2580.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig112308:6..299- (Macrocystis pyrifera P11B4 male)
GGTGTGCCAGCCTCGACCGAGGTGCTCGGCGATCGCGCCGCGACCCTGGC
TGCGCTCCGTGGCCTCACCCGCCCCGGCGGCCTGGTCCTGGTCGGCGAGG
AGTTCTACCACCGCGCGCCGGACGCCGAGCTGCAGGCGCTGCTCGGCGGG
GACCAGACCGACTTCACGTTCGGCTTCGACGACCAGCTCGCCCTCGCCGC
GGAGCACGGGCTCGAAGTCGTGCACGCCCTCGCCAGCACCGAGGCCGAGC
TGCGCGCCTACGACGGCGCCTTCCACGACGCCATCCGCGCCTTCGGTGTG
CCAGCCTCGACCGAGGTGCTCGGCGATCGCGCCGCGACCCTGGCTGCGCT
CCGTGGCCTCACCCGCCCCGGCGGCCTGGTCCTGGTCGGCGAGGAGTTCT
ACCACCGCGCGCCGGACGCCGAGCTGCAGGCGCTGCTCGGCGGGGACCAG
ACCGACTTCACGTTCGGCTTCGACGACCAGCTCGCCCTCGCCGCGGAGCA
CGGGCTCGAAGTCGTGCACGCCCTCGCCAGCACCGAGGCCGAGCTGCGCG
CCTACGACGGCGCCTTCCACGACGCCATCCGCGCCTTC
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