mRNA_M-pyrifera_M_contig112303.2579.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112303.2579.1
Unique NamemRNA_M-pyrifera_M_contig112303.2579.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112303.2579.1 vs. uniprot
Match: A0A218XTM9_PUNGR (SREBP regulating gene protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218XTM9_PUNGR)

HSP 1 Score: 68.2 bits (165), Expect = 1.270e-11
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:    4 GLSCNQVCAAQGRRCDQASLPLINKCSWLEEAHPSICTDACSVSEGPDQPALIAPNAPK--TPNACLQSADDFAPRCEGKWEFAQRLCPCA 270
            G  C+ VC + G+ C  + L L+N+C  +++     C  AC  S+G DQPA +A +AP+   P ACL +       C+G     +RLCPCA
Sbjct:  191 GEPCDSVCKSVGQSCVPSKLSLLNQCEIMQKYMS--CKGACLASDGADQPAEVAEDAPRHLNPGACLYTQTQSLLSCDGSHRHTRRLCPCA 279
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112303.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A218XTM9_PUNGR1.270e-1137.36SREBP regulating gene protein n=2 Tax=Punica grana... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112303contigM-pyrifera_M_contig112303:140..415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.9
Seed ortholog evalue3.6e-10
Seed eggNOG ortholog4533.OB11G17330.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Uncharacterized conserved protein (DUF2054)
EggNOG OGs37QI0@33090,3GG17@35493,3I781@38820,3KMMP@4447,KOG3136@1,KOG3136@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_002710.1
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.0658686-CDS-M-pyrifera_M_contig112303:139..4151622815637.0658686-CDS-M-pyrifera_M_contig112303:139..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112303 140..415 -
1692277498.9459994-CDS-M-pyrifera_M_contig112303:139..4151692277498.9459994-CDS-M-pyrifera_M_contig112303:139..415Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112303 140..415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112303.2579.1prot_M-pyrifera_M_contig112303.2579.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112303 140..415 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112303.2579.1

>prot_M-pyrifera_M_contig112303.2579.1 ID=prot_M-pyrifera_M_contig112303.2579.1|Name=mRNA_M-pyrifera_M_contig112303.2579.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
PGLSCNQVCAAQGRRCDQASLPLINKCSWLEEAHPSICTDACSVSEGPDQ
PALIAPNAPKTPNACLQSADDFAPRCEGKWEFAQRLCPCAA*
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mRNA from alignment at M-pyrifera_M_contig112303:140..415-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112303.2579.1 ID=mRNA_M-pyrifera_M_contig112303.2579.1|Name=mRNA_M-pyrifera_M_contig112303.2579.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig112303:140..415- (Macrocystis pyrifera P11B4 male)
CCTGGCCTCAGCTGCAACCAAGTGTGTGCTGCGCAGGGCAGGAGGTGCGA
CCAAGCCTCGCTCCCGCTCATCAACAAGTGCTCCTGGCTCGAGGAAGCAC
ACCCCAGCATCTGCACAGACGCCTGCTCCGTCTCAGAAGGACCCGACCAA
CCTGCGCTCATCGCCCCAAACGCACCCAAAACACCCAACGCATGCCTCCA
GTCCGCAGACGACTTTGCCCCGAGGTGCGAAGGCAAGTGGGAGTTCGCAC
AACGACTGTGCCCTTGCGCCGCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112303:140..415-

>mRNA_M-pyrifera_M_contig112303.2579.1 ID=mRNA_M-pyrifera_M_contig112303.2579.1|Name=mRNA_M-pyrifera_M_contig112303.2579.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig112303:140..415- (Macrocystis pyrifera P11B4 male)
CCTGGCCTCAGCTGCAACCAAGTGTGTGCTGCGCAGGGCAGGAGGTGCGA
CCAAGCCTCGCTCCCGCTCATCAACAAGTGCTCCTGGCTCGAGGAAGCAC
ACCCCAGCATCTGCACAGACGCCTGCTCCGTCTCAGAAGGACCCGACCAA
CCTGCGCTCATCGCCCCAAACGCACCCAAAACACCCAACGCATGCCTCCA
GTCCGCAGACGACTTTGCCCCGAGGTGCGAAGGCAAGTGGGAGTTCGCAC
AACGACTGTGCCCTTGCGCCGCCTAACCTGGCCTCAGCTGCAACCAAGTG
TGTGCTGCGCAGGGCAGGAGGTGCGACCAAGCCTCGCTCCCGCTCATCAA
CAAGTGCTCCTGGCTCGAGGAAGCACACCCCAGCATCTGCACAGACGCCT
GCTCCGTCTCAGAAGGACCCGACCAACCTGCGCTCATCGCCCCAAACGCA
CCCAAAACACCCAACGCATGCCTCCAGTCCGCAGACGACTTTGCCCCGAG
GTGCGAAGGCAAGTGGGAGTTCGCACAACGACTGTGCCCTTGCGCCGCCT
AA
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