mRNA_M-pyrifera_M_contig111958.2502.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111958.2502.1
Unique NamemRNA_M-pyrifera_M_contig111958.2502.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A5A8D737_CAFRO (Palmitoyltransferase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D737_CAFRO)

HSP 1 Score: 184 bits (468), Expect = 2.720e-53
Identity = 78/168 (46.43%), Postives = 104/168 (61.90%), Query Frame = 1
Query:   34 AEPPHPSIPPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKEWKPQRY 537
            A PP   +P R H+   S+R+VHGFDH+CGVL TP+GERNHCRFWWFL  Q   +   + + HS + +      WW  N G   L++TL++L  F   +L +H+W A+T +TS ELFKGP  VWYLRHT+ CD P+S+    NL  FCC  D    AL  + W+ Q +
Sbjct:  259 APPPREGLPVRAHFCKVSQRYVHGFDHYCGVLATPVGERNHCRFWWFLLAQSATIGAALGITHSAFQFQPTYTGWWSANGGVFALALTLWILLAFAGGMLLLHSWLAITGSTSYELFKGPRRVWYLRHTKMCDYPFSKGPAGNLQAFCCLSDAACVALYGRRWRAQAW 426          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A6G0W546_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W546_9STRA)

HSP 1 Score: 137 bits (344), Expect = 6.300e-36
Identity = 68/157 (43.31%), Postives = 90/157 (57.32%), Query Frame = 1
Query:   58 PPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKEWKP 528
            P R ++ G   R V  FDH C  +GT IGE+NHCRFWWFL +    ++  I +VHSGY  A  +  W   N   ++ ++  +       +L G HT+  LTN+T+ EL KGP  + YLR TR CDLP+S   LRNL+ FCC R G     A + WKP
Sbjct:  164 PLRAYHCGYCNRCVATFDHHCFCIGTCIGEKNHCRFWWFLFLTSIEVYTCIGIVHSGYQSAPTLSAWLNANSLALVATLFFWCFAFTAYSLFGFHTFLMLTNSTTRELGKGPEKLAYLRGTRECDLPFSNGVLRNLSGFCCIRAGCRRPWAPEAWKP 320          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A7S1UKH9_9STRA (Palmitoyltransferase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKH9_9STRA)

HSP 1 Score: 134 bits (336), Expect = 9.080e-36
Identity = 65/161 (40.37%), Postives = 89/161 (55.28%), Query Frame = 1
Query:   58 PPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVW--WQD-NWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKEWKPQ 531
            P R H+    +R V  FDH    +GT +GERN CRFWW+L  Q  ALW  + +     V    +  W  W D N G ++LS  + ++ L+V  +    TW A T +T  E+++GP  + YLR  R CDLPYS    RN+  FCC +DG   A+ N EWKP+
Sbjct:   27 PLRAHHCRTCDRCVATFDHXXNCIGTCVGERNACRFWWWLFFQCAALWCAVGIAAEAVVNVGRVKSWGAWADTNAGPLILSFLVGLIGLYVFGVFCFQTWLAATTSTGYEVYRGPEGLKYLRGFRDCDLPYSNGLHRNMKIFCCLQDGCCTAIFNDEWKPR 187          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A7R9UEE3_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEE3_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.600e-32
Identity = 65/152 (42.76%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   91 RFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGY--VYAYEMDVWWQD-NWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKEWKPQRY 537
            R V  FDH C  LGT IGERN CRFWWFL  Q  ALW    +V   +  +  +     W D N  ++ L +   +L  FV+ LL   +W A TNTT  E+ + P  + YL+    CDLP+SR   RNL  FCC RDG  A   +  W P+RY
Sbjct:    2 RCVASFDHHCPCLGTCIGERNVCRFWWFLFFQATALWVANGMVFEAFTPLRTFRSAAEWLDTNSSQIGLCLVFSILGCFVSGLLAFQSWLAATNTTGFEI-RRPERLPYLKGFHDCDLPFSRGLNRNLEGFCCLRDGCCAGAFSTSWSPRRY 152          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A485K8G1_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K8G1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.520e-27
Identity = 64/177 (36.16%), Postives = 91/177 (51.41%), Query Frame = 1
Query:   58 PPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGKVLLSITLYVLQLFVTALLGIHT----WHA-------------LTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKEWKPQRY 537
            P R ++    +R V  FDH C  +GT +GERNHCRFWWFL +    ++  + +VHSG+  A  + VW + N   ++  +  +       +L G H+    W               LTN+T+ EL KGP  + YLR TR CDLP+S     NL  FCC R G+      K+W PQ++
Sbjct:  168 PLRAYHCAFCQRCVATFDHHCFCIGTCVGERNHCRFWWFLLLTSIEIYTCLGIVHSGFHTAPTIQVWLKANCMALVGVVFFWCFAFSAYSLFGFHSTFCSWSECLVYANTIVAFLMLTNSTTRELGKGPEKLAYLRGTRECDLPFSNGLCGNLGGFCCVRAGL---RHPKDWTPQQW 341          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A6U5KJH5_9STRA (Palmitoyltransferase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5KJH5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 8.600e-27
Identity = 66/175 (37.71%), Postives = 98/175 (56.00%), Query Frame = 1
Query:   46 HPSIPPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHS---GY-------VYAYEMDVWWQDNWGKVLLSITLYVLQLFVTALLG--IHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALA--NKEWKP 528
            H + P R H+    +R V  FDH C ++GT IGERNHCRFWWFL  Q+      IS+++S   GY        Y  E D ++  N   +++ +++Y+  L +TA++    H++ A++N TS E  KGP  + YL  T+ CD+P+S+    N+  FCC RD  W  L   N+ W P
Sbjct:  220 HFAPPLRAHHCKHCDRCVATFDHHCFLIGTCIGERNHCRFWWFLTFQLLGFMTCISILNSRVDGYRGGDDTQEYVKE-DRFFFFNDQLLVIVVSIYLWALMITAMIMWVTHSFFAISNYTSFECGKGPAYIDYLAGTKNCDMPFSKGIDANVRGFCCFRDRAWDFLVRNNERWIP 393          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A2R5GTB8_9STRA (Palmitoyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTB8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.430e-26
Identity = 64/163 (39.26%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   55 IPPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAY-EMDVWWQDNWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWA-ALANKEWKPQRY 537
            +P R  +   S+R+V  +DH+CGVLGT IGE+NHCRFWWFL      L +   VV SG+     E+  W   N   +L+ + + +L   V +LL  HT+ A    TS E  +    + YL  TR  DLP+SR    NL  FC   DGI    +A++EW+P+++
Sbjct:  220 VPMRAKFCRNSQRYVATYDHYCGVLGTCIGEKNHCRFWWFLLTHTLGLAYMTRVVQSGFQDTKAEVGTWLDHNTHALLVFLVVVILLCAVGSLLLFHTFLACAAMTSYEFLRAD-KISYLEGTRDFDLPFSRGLRTNLHRFCIL-DGIKLFCVAHEEWRPRQW 380          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: T0RRY6_SAPDV (UDENN domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RRY6_SAPDV)

HSP 1 Score: 112 bits (281), Expect = 1.260e-25
Identity = 59/160 (36.88%), Postives = 81/160 (50.62%), Query Frame = 1
Query:   58 PPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFL---CMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKEWKP 528
            P R ++     R V  FDH         GERNHCRFWWF+   CM++      + ++HS +     + +W + N   +  ++  +   L   +LLG HT+  LTN+T+ EL KGP  + YL  TR CDLP+S     NL  FCC R G W  L    W P
Sbjct:  157 PLRSYHCPFCNRCVATFDHXXXXXXXXXGERNHCRFWWFILLSCMEVSTC---LGIIHSSFHTEATLQLWLRANGMALTAAMFFWFFALLTYSLLGFHTFLMLTNSTTRELGKGPEKLKYLTGTRECDLPFSHGLCGNLRAFCCLRPGCW--LQKSTWTP 311          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A1V9Z7K6_9STRA (Zinc finger protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z7K6_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.090e-24
Identity = 58/159 (36.48%), Postives = 81/159 (50.94%), Query Frame = 1
Query:   58 PPRVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGKVLLSITLYVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIW--AALANKEWKP 528
            P R ++     + V  FDH         GERNHCRFWWF+ +    +   + ++HSG+     + +W + N   +  ++  +   L   +L G HT+  LTN+T+ EL KGP  + YL  TR CDLP+S     NL  FCC R G W  A  A   WKP
Sbjct:  144 PLRSYHCAYCNKCVATFDHXXXXXXXXXGERNHCRFWWFILLSCIEVSTCLGIIHSGFRSEGSLKLWLKSNGMALAAAMFFWFFALLTYSLCGFHTFLMLTNSTTRELGKGPEKLKYLHGTRECDLPFSHGVCGNLRAFCCLRPG-WCKADWAPHTWKP 301          
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Match: A0A7S0GL60_9STRA (Palmitoyltransferase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GL60_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.710e-23
Identity = 62/166 (37.35%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   55 IPP-RVHYDGRSERFVHGFDHFCGVLGTPIGERNHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGK--------VLLSITLYVLQLFVTALLG--IHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRDALRNLTEFCCKRDGIWAALANKE 519
            +PP R H+    ++ V  FD         IGERNHCRFWWFL  Q+  LW   SV+ SG    +   V    N+ +        V++   LYV  L   AL+    H+  AL N T+ E  KGP  + YL+ T+ CD P+SR    N+  FCC RD +W++L+  E
Sbjct:  184 MPPLRAHHCRICDKCVATFDXXXXXXXXXIGERNHCRFWWFLTFQLFGLWRYSSVIESGPSVLFIARVV-ARNYSENKELLGHAVIILSKLYVYPLMACALIMWVFHSLLALCNVTTYEFVKGPRELAYLKGTKECDFPFSRGPDSNIRMFCCFRDEVWSSLSGTE 348          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111958.2502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8D737_CAFRO2.720e-5346.43Palmitoyltransferase n=1 Tax=Cafeteria roenbergens... [more]
A0A6G0W546_9STRA6.300e-3643.31Palmitoyltransferase n=1 Tax=Aphanomyces euteiches... [more]
A0A7S1UKH9_9STRA9.080e-3640.37Palmitoyltransferase n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UEE3_9STRA1.600e-3242.76Palmitoyltransferase (Fragment) n=1 Tax=Pinguiococ... [more]
A0A485K8G1_9STRA1.520e-2736.16Palmitoyltransferase n=1 Tax=Aphanomyces stellatus... [more]
A0A6U5KJH5_9STRA8.600e-2737.71Palmitoyltransferase n=1 Tax=Corethron hystrix Tax... [more]
A0A2R5GTB8_9STRA1.430e-2639.26Palmitoyltransferase n=1 Tax=Hondaea fermentalgian... [more]
T0RRY6_SAPDV1.260e-2536.88UDENN domain-containing protein n=1 Tax=Saprolegni... [more]
A0A1V9Z7K6_9STRA1.090e-2436.48Zinc finger protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A7S0GL60_9STRA3.710e-2337.35Palmitoyltransferase n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111958contigM-pyrifera_M_contig111958:27..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue2.1e-22
Seed eggNOG ortholog157072.XP_008875030.1
KEGG koko:K18932
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size537
Cds size537
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.1075165-CDS-M-pyrifera_M_contig111958:26..5631622815633.1075165-CDS-M-pyrifera_M_contig111958:26..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111958 27..563 +
1692277497.0092254-CDS-M-pyrifera_M_contig111958:26..5631692277497.0092254-CDS-M-pyrifera_M_contig111958:26..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111958 27..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111958.2502.1prot_M-pyrifera_M_contig111958.2502.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111958 27..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111958.2502.1

>prot_M-pyrifera_M_contig111958.2502.1 ID=prot_M-pyrifera_M_contig111958.2502.1|Name=mRNA_M-pyrifera_M_contig111958.2502.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=179bp
GFAVGLPPGPQAEPPHPSIPPRVHYDGRSERFVHGFDHFCGVLGTPIGER
NHCRFWWFLCMQMGALWFGISVVHSGYVYAYEMDVWWQDNWGKVLLSITL
YVLQLFVTALLGIHTWHALTNTTSVELFKGPGAVWYLRHTRPCDLPYSRD
ALRNLTEFCCKRDGIWAALANKEWKPQRY
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mRNA from alignment at M-pyrifera_M_contig111958:27..563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111958.2502.1 ID=mRNA_M-pyrifera_M_contig111958.2502.1|Name=mRNA_M-pyrifera_M_contig111958.2502.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=537bp|location=Sequence derived from alignment at M-pyrifera_M_contig111958:27..563+ (Macrocystis pyrifera P11B4 male)
GGTTTCGCGGTCGGTTTACCCCCTGGCCCACAAGCAGAGCCTCCCCACCC CTCCATTCCGCCTCGAGTGCACTATGACGGTCGGAGTGAGCGGTTTGTGC ATGGGTTTGACCATTTTTGCGGCGTTTTGGGCACTCCAATTGGAGAACGG AACCACTGTCGGTTTTGGTGGTTTTTGTGCATGCAAATGGGGGCCTTGTG GTTTGGGATCAGCGTGGTGCACAGTGGGTACGTGTATGCGTACGAAATGG ACGTGTGGTGGCAGGACAATTGGGGCAAGGTGCTCTTGTCGATCACGCTC TACGTGTTGCAGCTCTTTGTAACGGCTCTCTTGGGCATCCACACGTGGCA CGCCCTCACCAACACCACGTCGGTTGAACTCTTCAAAGGACCAGGAGCTG TGTGGTACTTACGCCACACCCGCCCCTGTGATCTCCCGTACTCCAGAGAC GCGCTGCGAAACCTCACCGAGTTTTGCTGCAAGAGAGACGGCATCTGGGC AGCGCTGGCCAACAAAGAGTGGAAGCCCCAACGCTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111958:27..563+

>mRNA_M-pyrifera_M_contig111958.2502.1 ID=mRNA_M-pyrifera_M_contig111958.2502.1|Name=mRNA_M-pyrifera_M_contig111958.2502.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1074bp|location=Sequence derived from alignment at M-pyrifera_M_contig111958:27..563+ (Macrocystis pyrifera P11B4 male)
GGTTTCGCGGTCGGTTTACCCCCTGGCCCACAAGCAGAGCCTCCCCACCC
CTCCATTCCGCCTCGAGTGCACTATGACGGTCGGAGTGAGCGGTTTGTGC
ATGGGTTTGACCATTTTTGCGGCGTTTTGGGCACTCCAATTGGAGAACGG
AACCACTGTCGGTTTTGGTGGTTTTTGTGCATGCAAATGGGGGCCTTGTG
GTTTGGGATCAGCGTGGTGCACAGTGGGTACGTGTATGCGTACGAAATGG
ACGTGTGGTGGCAGGACAATTGGGGCAAGGTGCTCTTGTCGATCACGCTC
TACGTGTTGCAGCTCTTTGTAACGGCTCTCTTGGGCATCCACACGTGGCA
CGCCCTCACCAACACCACGTCGGTTGAACTCTTCAAAGGACCAGGAGCTG
TGTGGTACTTACGCCACACCCGCCCCTGTGATCTCCCGTACTCCAGAGAC
GCGCTGCGAAACCTCACCGAGTTTTGCTGCAAGAGAGACGGCATCTGGGC
AGCGCTGGCCAACAAAGAGTGGAAGCCCCAACGCTACGGTTTCGCGGTCG
GTTTACCCCCTGGCCCACAAGCAGAGCCTCCCCACCCCTCCATTCCGCCT
CGAGTGCACTATGACGGTCGGAGTGAGCGGTTTGTGCATGGGTTTGACCA
TTTTTGCGGCGTTTTGGGCACTCCAATTGGAGAACGGAACCACTGTCGGT
TTTGGTGGTTTTTGTGCATGCAAATGGGGGCCTTGTGGTTTGGGATCAGC
GTGGTGCACAGTGGGTACGTGTATGCGTACGAAATGGACGTGTGGTGGCA
GGACAATTGGGGCAAGGTGCTCTTGTCGATCACGCTCTACGTGTTGCAGC
TCTTTGTAACGGCTCTCTTGGGCATCCACACGTGGCACGCCCTCACCAAC
ACCACGTCGGTTGAACTCTTCAAAGGACCAGGAGCTGTGTGGTACTTACG
CCACACCCGCCCCTGTGATCTCCCGTACTCCAGAGACGCGCTGCGAAACC
TCACCGAGTTTTGCTGCAAGAGAGACGGCATCTGGGCAGCGCTGGCCAAC
AAAGAGTGGAAGCCCCAACGCTAC
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