mRNA_M-pyrifera_M_contig11185.2481.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11185.2481.1
Unique NamemRNA_M-pyrifera_M_contig11185.2481.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11185.2481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11185contigM-pyrifera_M_contig11185:3078..3637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size560
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.9156017-UTR-M-pyrifera_M_contig11185:3077..33191622815631.9156017-UTR-M-pyrifera_M_contig11185:3077..3319Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11185 3078..3319 +
1692277496.4052072-UTR-M-pyrifera_M_contig11185:3077..33191692277496.4052072-UTR-M-pyrifera_M_contig11185:3077..3319Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11185 3078..3319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.932979-CDS-M-pyrifera_M_contig11185:3319..36371622815631.932979-CDS-M-pyrifera_M_contig11185:3319..3637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11185 3320..3637 +
1692277496.4145002-CDS-M-pyrifera_M_contig11185:3319..36371692277496.4145002-CDS-M-pyrifera_M_contig11185:3319..3637Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11185 3320..3637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11185.2481.1prot_M-pyrifera_M_contig11185.2481.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11185 3320..3637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11185.2481.1

>prot_M-pyrifera_M_contig11185.2481.1 ID=prot_M-pyrifera_M_contig11185.2481.1|Name=mRNA_M-pyrifera_M_contig11185.2481.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MDGGGGGRERILHVFVLLFFGMPPACSCNPREEGFLHSSDRSTRSEEILG
NVWFLSRRAHVLLFSLFGKKTLGSLVFSLGHTRSFPLFLPLRRSGKRRVS
VGGGG*
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mRNA from alignment at M-pyrifera_M_contig11185:3078..3637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11185.2481.1 ID=mRNA_M-pyrifera_M_contig11185.2481.1|Name=mRNA_M-pyrifera_M_contig11185.2481.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=560bp|location=Sequence derived from alignment at M-pyrifera_M_contig11185:3078..3637+ (Macrocystis pyrifera P11B4 male)
TTTCCGATGAACCGGAATTAATCGCACCGCGTTTTTTGGGTTTTTGCCGC
AAAGGACGTGGGGTGTGCTAAGAGAGAAAAAGGCGTGTTTTGTCCTGCTA
GTAAAAAGGAAGGCGATATAAATGCGCGCTCGGGATTAGTTGCCGTGGAA
AGAGGGGAAGAAAGAGTTTTCCACCCTGTTGGGCAGGCGTTGTTGAAGCG
AAACTCTTTCGACCTTGCTGTGGGTTGGTCTCTGGCTGGCTGATGGATGG
AGGCGGGGGGGGACGAGAAAGGATTTTGCATGTTTTTGTGTTGTTGTTTT
TTGGGATGCCCCCGGCGTGTTCGTGCAATCCAAGGGAAGAAGGTTTTTTG
CATTCTTCAGACCGATCGACGAGAAGCGAAGAGATATTAGGAAACGTTTG
GTTTCTTTCTCGACGTGCCCACGTGCTTTTGTTTTCCTTATTCGGGAAAA
AAACGCTTGGTTCTCTAGTTTTCTCGCTCGGCCATACTCGTAGCTTTCCT
CTCTTCTTGCCGTTACGACGATCGGGGAAGAGGCGTGTGAGTGTAGGGGG
GGGGGGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11185:3078..3637+

>mRNA_M-pyrifera_M_contig11185.2481.1 ID=mRNA_M-pyrifera_M_contig11185.2481.1|Name=mRNA_M-pyrifera_M_contig11185.2481.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig11185:3078..3637+ (Macrocystis pyrifera P11B4 male)
ATGGATGGAGGCGGGGGGGGACGAGAAAGGATTTTGCATGTTTTTGTGTT
GTTGTTTTTTGGGATGCCCCCGGCGTGTTCGTGCAATCCAAGGGAAGAAG
GTTTTTTGCATTCTTCAGACCGATCGACGAGAAGCGAAGAGATATTAGGA
AACGTTTGGTTTCTTTCTCGACGTGCCCACGTGCTTTTGTTTTCCTTATT
CGGGAAAAAAACGCTTGGTTCTCTAGTTTTCTCGCTCGGCCATACTCGTA
GCTTTCCTCTCTTCTTGCCGTTACGACGATCGGGGAAGAGGCGTGTGAGT
GTAGGGGGGGGGGGGTAGATGGATGGAGGCGGGGGGGGACGAGAAAGGAT
TTTGCATGTTTTTGTGTTGTTGTTTTTTGGGATGCCCCCGGCGTGTTCGT
GCAATCCAAGGGAAGAAGGTTTTTTGCATTCTTCAGACCGATCGACGAGA
AGCGAAGAGATATTAGGAAACGTTTGGTTTCTTTCTCGACGTGCCCACGT
GCTTTTGTTTTCCTTATTCGGGAAAAAAACGCTTGGTTCTCTAGTTTTCT
CGCTCGGCCATACTCGTAGCTTTCCTCTCTTCTTGCCGTTACGACGATCG
GGGAAGAGGCGTGTGAGTGTAGGGGGGGGGGGGTAG
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