mRNA_M-pyrifera_M_contig111730.2451.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111730.2451.1
Unique NamemRNA_M-pyrifera_M_contig111730.2451.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A6H5KX57_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX57_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 6.600e-32
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 1
Query:    7 LRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLS-FDVLVATPDAF 276
            LR YQ RIA  C   NTIVVLPTGSGKTL+AAE I+R+GPPALFLVPT L+VDQQAEAL SWTGL+V KY GG  +P S F +LV+TP AF
Sbjct:   24 LRGYQSRIANKCLHDNTIVVLPTGSGKTLLAAEAIKRLGPPALFLVPTRLMVDQQAEALGSWTGLSVTKYMGGAGLPPSTFKILVSTPQAF 114          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A1Q9EU77_SYMMI (Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EU77_SYMMI)

HSP 1 Score: 122 bits (307), Expect = 1.180e-30
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 MRLRDYQLRIARGC-GEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            M LR YQ R+        NT+VVLPTG+GKTLIA+E+I+R+GPP LFLVPTCLLV+QQA+A+  WTGL VA++ GG+S+P  FDVLV+TP AF
Sbjct:    1 MELRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAF 93          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A812TEW1_9DINO (DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TEW1_9DINO)

HSP 1 Score: 122 bits (307), Expect = 1.550e-30
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    1 MRLRDYQLRIARGC-GEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            M LR YQ R+        NT+VVLPTG+GKTLIA+E+I+R+GPP LFLVPTCLLV+QQA+A+  WTGL VA++ GG+S+P  FDVLV+TP AF
Sbjct:    1 MELRAYQARLLEEILASGNTLVVLPTGAGKTLIASELIRRLGPPCLFLVPTCLLVEQQAKAVRDWTGLQVAEFMGGMSLPAHFDVLVSTPKAF 93          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A812RBN0_9DINO (DCL2A protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RBN0_9DINO)

HSP 1 Score: 120 bits (301), Expect = 8.180e-30
Identity = 60/93 (64.52%), Postives = 73/93 (78.49%), Query Frame = 1
Query:    1 MRLRDYQLRIARGC-GEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            M+LR YQ RI        NTIVVLPTG+GKTLIA+E+++R+GP  LFLVPTCLLV+QQA+A+  WTGL VA++ GG SMP  FDVLV+TP AF
Sbjct:   17 MQLRGYQQRIVDDALTTGNTIVVLPTGAGKTLIASELMKRLGPGCLFLVPTCLLVEQQAKAIREWTGLRVAEFMGGASMPQQFDVLVSTPKAF 109          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A7S4V2U7_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4V2U7_9DINO)

HSP 1 Score: 112 bits (280), Expect = 6.010e-27
Identity = 59/94 (62.77%), Postives = 72/94 (76.60%), Query Frame = 1
Query:    1 MRLRDYQLRIARGCGEA--NTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            M LR YQ RI  G  EA  NT+VVLPTG+GKTLIAAE+I+R+G   LFLVPTCLLV+QQA+A+  WT L+V +Y GG ++P  F VLV+TP AF
Sbjct:    1 MELRPYQSRIV-GQAEASGNTVVVLPTGAGKTLIAAELIKRVGGTCLFLVPTCLLVEQQAKAVGKWTKLSVGEYMGGATLPSRFQVLVSTPKAF 93          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A6H5L3L3_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L3_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.230e-25
Identity = 58/92 (63.04%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    7 LRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWT-GLNVAKYKGGVSMPL-SFDVLVATPDAF 276
            LR YQ RIAR C   NT+VVLPTGSGKT+IAAEVI++  P ALFLVPT  LV QQA+ L +WT    +A+ +GG  +   SFDVLVATPDAF
Sbjct:   48 LRPYQSRIARACERDNTLVVLPTGSGKTIIAAEVIKQRPPRALFLVPTRHLVKQQAKVLRAWTFRRRIAQLRGGDELQKKSFDVLVATPDAF 139          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI)

HSP 1 Score: 103 bits (256), Expect = 1.220e-23
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 1
Query:   16 YQLRIARGCGEA-NTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            YQ RI      A N IVVLPTG+GKTLIA+E+I  +GPP L  VPTC+LV+QQA A   WTGL VA++ GGVS+P  FDVLV+TP AF
Sbjct: 1998 YQERIVTEVRAAGNAIVVLPTGAGKTLIASELITGLGPPCL--VPTCMLVEQQARAAREWTGLQVAEFMGGVSVPQRFDVLVSTPKAF 2083          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A2V3IZ19_9FLOR (Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ19_9FLOR)

HSP 1 Score: 99.4 bits (246), Expect = 2.300e-22
Identity = 52/92 (56.52%), Postives = 65/92 (70.65%), Query Frame = 1
Query:    1 MRLRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            +R R YQ RI       NT+VVLPTG+GKTLIA EVI+ + PPALF+VPT LLV QQ+EA+ + T   VA+  GG S+P S+ V+VATP  F
Sbjct:   12 LRPRPYQQRIIDQAVLKNTLVVLPTGAGKTLIATEVIRTLSPPALFIVPTVLLVKQQSEAIAAHTNYKVAQLHGGKSLPHSWHVVVATPACF 103          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A836C8Q2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q2_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 4.350e-16
Identity = 48/95 (50.53%), Postives = 62/95 (65.26%), Query Frame = 1
Query:    7 LRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVI-----QRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF 276
            LR YQ RI     + N +VVLPTG+GKTL+AAE I     ++    ALFLVPT  LV QQA+ +   TGL+VA+ KGG ++ +   VLVATP A+
Sbjct:   28 LRGYQERICMDMAKGNHLVVLPTGAGKTLVAAECIAAELWKQPTKRALFLVPTRNLVHQQAQVIEGETGLDVAELKGGNALRIGCRVLVATPGAY 122          
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Match: A0A0L0FPA9_9EUKA (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FPA9_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.140e-13
Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    4 RLRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVI-----QRIGPPALFLVPTCLLVDQQAEALLSWTGLNVAKYKGG-----VSMPLSFDVLVATPDAF 276
            +LR YQ RI     E N+IVVLPTG+GKTLIA  +I      R     LF+VPT  L+DQQA  +   TGL V    GG     +S+  + DV+VA P AF
Sbjct:   17 QLRGYQERIVAEASERNSIVVLPTGTGKTLIACALILHLMRTRSARKTLFIVPTIALMDQQAAVIARETGLGVITMGGGRQPTRLSLK-NADVVVALPAAF 116          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111730.2451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX57_9PHAE6.600e-3271.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Q9EU77_SYMMI1.180e-3063.44Endoribonuclease Dicer-like 2a n=3 Tax=Symbiodiniu... [more]
A0A812TEW1_9DINO1.550e-3063.44DCL2A protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A812RBN0_9DINO8.180e-3064.52DCL2A protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A7S4V2U7_9DINO6.010e-2762.77Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A6H5L3L3_9PHAE1.230e-2563.04Helicase ATP-binding domain-containing protein n=1... [more]
A0A812IWI1_SYMPI1.220e-2362.50CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]
A0A2V3IZ19_9FLOR2.300e-2256.52Endoribonuclease Dicer-like n=1 Tax=Gracilariopsis... [more]
A0A836C8Q2_9STRA4.350e-1650.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0L0FPA9_9EUKA1.140e-1346.53Helicase ATP-binding domain-containing protein (Fr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111730contigM-pyrifera_M_contig111730:131..406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.4e-30
Seed eggNOG ortholog2880.D7FQZ7
KEGG koko:K11592
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0571@1,COG1111@1,KOG0354@2759,KOG0701@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815630.6488178-CDS-M-pyrifera_M_contig111730:130..4061622815630.6488178-CDS-M-pyrifera_M_contig111730:130..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111730 131..406 +
1692277495.8869753-CDS-M-pyrifera_M_contig111730:130..4061692277495.8869753-CDS-M-pyrifera_M_contig111730:130..406Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111730 131..406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111730.2451.1prot_M-pyrifera_M_contig111730.2451.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111730 131..406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111730.2451.1

>prot_M-pyrifera_M_contig111730.2451.1 ID=prot_M-pyrifera_M_contig111730.2451.1|Name=mRNA_M-pyrifera_M_contig111730.2451.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MRLRDYQLRIARGCGEANTIVVLPTGSGKTLIAAEVIQRIGPPALFLVPT
CLLVDQQAEALLSWTGLNVAKYKGGVSMPLSFDVLVATPDAF
back to top

mRNA from alignment at M-pyrifera_M_contig111730:131..406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111730.2451.1 ID=mRNA_M-pyrifera_M_contig111730.2451.1|Name=mRNA_M-pyrifera_M_contig111730.2451.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig111730:131..406+ (Macrocystis pyrifera P11B4 male)
ATGAGGCTCCGCGACTACCAGCTTCGCATTGCACGGGGATGCGGGGAGGC GAACACCATCGTGGTGCTACCCACGGGGTCTGGCAAGACCCTCATCGCAG CCGAGGTGATCCAGCGAATTGGCCCCCCAGCTCTTTTCCTGGTCCCGACG TGCCTCTTGGTCGATCAGCAGGCGGAGGCACTGCTCAGCTGGACGGGCCT AAACGTTGCGAAGTACAAGGGCGGCGTGTCGATGCCGCTGTCGTTCGACG TGTTGGTTGCAACCCCTGACGCTTTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111730:131..406+

>mRNA_M-pyrifera_M_contig111730.2451.1 ID=mRNA_M-pyrifera_M_contig111730.2451.1|Name=mRNA_M-pyrifera_M_contig111730.2451.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig111730:131..406+ (Macrocystis pyrifera P11B4 male)
ATGAGGCTCCGCGACTACCAGCTTCGCATTGCACGGGGATGCGGGGAGGC
GAACACCATCGTGGTGCTACCCACGGGGTCTGGCAAGACCCTCATCGCAG
CCGAGGTGATCCAGCGAATTGGCCCCCCAGCTCTTTTCCTGGTCCCGACG
TGCCTCTTGGTCGATCAGCAGGCGGAGGCACTGCTCAGCTGGACGGGCCT
AAACGTTGCGAAGTACAAGGGCGGCGTGTCGATGCCGCTGTCGTTCGACG
TGTTGGTTGCAACCCCTGACGCTTTCATGAGGCTCCGCGACTACCAGCTT
CGCATTGCACGGGGATGCGGGGAGGCGAACACCATCGTGGTGCTACCCAC
GGGGTCTGGCAAGACCCTCATCGCAGCCGAGGTGATCCAGCGAATTGGCC
CCCCAGCTCTTTTCCTGGTCCCGACGTGCCTCTTGGTCGATCAGCAGGCG
GAGGCACTGCTCAGCTGGACGGGCCTAAACGTTGCGAAGTACAAGGGCGG
CGTGTCGATGCCGCTGTCGTTCGACGTGTTGGTTGCAACCCCTGACGCTT
TC
back to top