mRNA_M-pyrifera_M_contig111632.2421.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111632.2421.1
Unique NamemRNA_M-pyrifera_M_contig111632.2421.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111632.2421.1 vs. uniprot
Match: C1MJB7_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MJB7_MICPC)

HSP 1 Score: 48.5 bits (114), Expect = 8.480e-5
Identity = 29/77 (37.66%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:    7 ALLAAVKIGNAGMVKACIAHNANINCRDETGATPLLCAAELGSYEVGKLLCDSGCDCSAVDQHGEGALLKASKKGHL 237
            ALL A    +A  ++  +A  A I CR E+GATP++CAA  G+    + L D+G D +AVD+ G   +  A+  G +
Sbjct:    1 ALLLASLGDDAKTIRELLARGAWIECRTESGATPVICAASKGAGMALEALLDAGADITAVDKVGANVVHLAAHNGRV 77
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111632.2421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
C1MJB7_MICPC8.480e-537.66Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111632contigM-pyrifera_M_contig111632:1..333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.8831482-CDS-M-pyrifera_M_contig111632:0..3331622815628.8831482-CDS-M-pyrifera_M_contig111632:0..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111632 1..333 +
1692277495.129579-CDS-M-pyrifera_M_contig111632:0..3331692277495.129579-CDS-M-pyrifera_M_contig111632:0..333Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111632 1..333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111632.2421.1prot_M-pyrifera_M_contig111632.2421.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111632 1..333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111632.2421.1

>prot_M-pyrifera_M_contig111632.2421.1 ID=prot_M-pyrifera_M_contig111632.2421.1|Name=mRNA_M-pyrifera_M_contig111632.2421.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
SAALLAAVKIGNAGMVKACIAHNANINCRDETGATPLLCAAELGSYEVGK
LLCDSGCDCSAVDQHGEGALLKASKKGHLLFLRLPWEVKDFEMDLGSPSV
QVDTPWEVCAI
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mRNA from alignment at M-pyrifera_M_contig111632:1..333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111632.2421.1 ID=mRNA_M-pyrifera_M_contig111632.2421.1|Name=mRNA_M-pyrifera_M_contig111632.2421.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig111632:1..333+ (Macrocystis pyrifera P11B4 male)
AGCGCGGCACTCTTGGCCGCAGTGAAGATTGGCAACGCAGGCATGGTGAA
GGCGTGTATTGCCCACAACGCCAACATCAACTGCAGAGACGAGACTGGCG
CCACGCCTTTGCTCTGCGCGGCAGAATTGGGGAGTTATGAGGTTGGCAAG
TTGCTGTGTGACAGCGGCTGCGACTGCTCCGCGGTGGACCAACATGGAGA
GGGCGCCCTGCTGAAGGCAAGCAAGAAGGGACATCTGCTGTTTCTTCGAC
TGCCTTGGGAGGTGAAGGACTTCGAGATGGATCTGGGCTCCCCTTCTGTT
CAGGTGGACACGCCATGGGAGGTGTGTGCGATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111632:1..333+

>mRNA_M-pyrifera_M_contig111632.2421.1 ID=mRNA_M-pyrifera_M_contig111632.2421.1|Name=mRNA_M-pyrifera_M_contig111632.2421.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig111632:1..333+ (Macrocystis pyrifera P11B4 male)
AGCGCGGCACTCTTGGCCGCAGTGAAGATTGGCAACGCAGGCATGGTGAA
GGCGTGTATTGCCCACAACGCCAACATCAACTGCAGAGACGAGACTGGCG
CCACGCCTTTGCTCTGCGCGGCAGAATTGGGGAGTTATGAGGTTGGCAAG
TTGCTGTGTGACAGCGGCTGCGACTGCTCCGCGGTGGACCAACATGGAGA
GGGCGCCCTGCTGAAGGCAAGCAAGAAGGGACATCTGCTGTTTCTTCGAC
TGCCTTGGGAGGTGAAGGACTTCGAGATGGATCTGGGCTCCCCTTCTGTT
CAGGTGGACACGCCATGGGAGGTGTGTGCGATCAGCGCGGCACTCTTGGC
CGCAGTGAAGATTGGCAACGCAGGCATGGTGAAGGCGTGTATTGCCCACA
ACGCCAACATCAACTGCAGAGACGAGACTGGCGCCACGCCTTTGCTCTGC
GCGGCAGAATTGGGGAGTTATGAGGTTGGCAAGTTGCTGTGTGACAGCGG
CTGCGACTGCTCCGCGGTGGACCAACATGGAGAGGGCGCCCTGCTGAAGG
CAAGCAAGAAGGGACATCTGCTGTTTCTTCGACTGCCTTGGGAGGTGAAG
GACTTCGAGATGGATCTGGGCTCCCCTTCTGTTCAGGTGGACACGCCATG
GGAGGTGTGTGCGATC
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