mRNA_M-pyrifera_M_contig111521.2396.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111521.2396.1
Unique NamemRNA_M-pyrifera_M_contig111521.2396.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: A0A7S2FF78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FF78_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.540e-45
Identity = 79/149 (53.02%), Postives = 108/149 (72.48%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNRKACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRG 447
            ++ +S+A S+RQHG G+LNTTVN  Y++LA KF VFSQFLFD+ IR  LS ER+WFR+++    + YP +RA +  KEIR+LG    G +F+D+FR+LIT++GNALG+VRMVRSAGM   + AVRF+PDL+ + +F    H   G   G
Sbjct:   39 INIQSIAASLRQHGLGILNTTVNYTYQFLAQKFHVFSQFLFDEYIRGHLSKERRWFRKHKAEHGNMYPYDRAFKFCKEIRKLGVADNGRTFLDQFRILITEIGNALGYVRMVRSAGMHFCSEAVRFLPDLDEIIDFE--PHAGAGKPAG 185          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: A0A7S2MKL7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MKL7_9STRA)

HSP 1 Score: 162 bits (409), Expect = 3.530e-44
Identity = 87/159 (54.72%), Postives = 115/159 (72.33%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNRKACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRGKGGVKDGAEE 477
            ++ +S+A S+RQHG G+LNTTVN  Y++L+ KF VFSQFLFD+ IR  LS ER+WFR+++   D  YP ERA +  KEIR+LG    G SF+D+FR+LIT++GNALG+VRMVRSAGM   + AVRF+PDLE +    F +H   G  + K  V+DG EE
Sbjct:  162 INTQSIAASLRQHGLGILNTTVNFTYQFLSQKFHVFSQFLFDEYIRGHLSKERRWFRKHK--GDRMYPYERAAKFVKEIRKLGVLESGKSFLDQFRILITEIGNALGYVRMVRSAGMHFCSEAVRFLPDLEDI--ITFQEHAGAG-TQPKESVEDGEEE 315          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: F0YB79_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB79_AURAN)

HSP 1 Score: 158 bits (399), Expect = 1.310e-41
Identity = 76/135 (56.30%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNRKACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKE 405
            ++ RS+A S++QHG G+LNTTVN  Y++LA KF VF+QFL+DD IRS LS ER+WFR++R++CD  YP +RA +  K++R+LG    G SF+D FR+LIT++GNALG+VRMVRSAG    A A RF+PD +   E
Sbjct:  787 INIRSIAASLKQHGLGVLNTTVNYTYQFLATKFHVFNQFLYDDYIRSHLSKERRWFRKHRESCDAMYPYDRAAKFAKDVRKLGVGDDGRSFLDHFRVLITEIGNALGYVRMVRSAGAEFCADAARFVPDFDDAAE 921          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: A0A329R7Z2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R7Z2_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.530e-41
Identity = 72/152 (47.37%), Postives = 110/152 (72.37%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNR--KACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRGK 450
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFLFD+ I+S+L  E++W++++R  K  D+KYP +RA Q +K+IR+LG +  G +F+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+P L     F+F  +   G+   K
Sbjct:   67 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLFDEYIKSYLQREKRWYKKHRDDKEVDNKYPFDRAFQFNKDIRKLGVSDSGKTFLDQFRMLITEIGNALGYVRMVRSAGMNYCSNAIKFVPHLNHT-HFKFEAYAGDGVAEEK 217          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: A0A024G7L8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G7L8_9STRA)

HSP 1 Score: 155 bits (393), Expect = 8.520e-41
Identity = 75/149 (50.34%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNRKAC--DDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMV 441
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFL+D+ I+S+L  E++W+R+NR     D+KYP  RA Q +++IR+LG +  G SF+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+PDL     F F +H QQ +V
Sbjct: 1029 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLYDEYIKSYLQREKRWYRKNRDDALVDNKYPYARAFQFNRDIRKLGVSDSGKSFLDQFRVLITEIGNALGYVRMVRSAGMNYCSNAIKFVPDLNQA-HFSFEEHTQQRIV 1176          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: F0WZP8_9STRA (KIAA1033 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZP8_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.940e-40
Identity = 74/149 (49.66%), Postives = 109/149 (73.15%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNRKAC--DDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMV 441
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFL+D+ I+S+L  E++W+R+NR     D+KYP  RA Q +++IR+LG +  G SF+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+PDL     F F +H QQ  +
Sbjct: 1030 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLYDEYIKSYLQREKRWYRKNRDDALVDNKYPYTRAFQFNRDIRKLGVSDSGKSFLDQFRVLITEIGNALGYVRMVRSAGMNYCSNAIKFVPDLNHT-HFSFEEHTQQRAI 1177          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: A0A6A4FUD0_9STRA (WASH complex subunit 4 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A6A4FUD0_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.990e-40
Identity = 73/152 (48.03%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNR--KACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRGK 450
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFLFD+ I+S+L  E++W++++R  K  D+KYP +RA Q +K+IR+LG +  G +F+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+PDL     F+F  +   G+   K
Sbjct: 1384 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLFDEYIKSYLQREKRWYKKHRDDKEVDNKYPFDRALQFNKDIRKLGVSDSGKTFLDQFRMLITEIGNALGYVRMVRSAGMNYCSNAIKFVPDLNHT-HFKFEAYAGDGVAEEK 1534          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: K3X002_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X002_GLOUD)

HSP 1 Score: 154 bits (388), Expect = 3.980e-40
Identity = 73/148 (49.32%), Postives = 110/148 (74.32%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNR--KACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGM 438
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFLFD+ I+S+L  E++W++++R  K  D+KYP ERA Q +K+IR+LG +  G +F+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+PDL     F+F  +   G+
Sbjct: 1015 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLFDEYIKSYLQREKRWYKKHRDDKEVDNKYPFERAFQFNKDIRKLGVSDSGKTFLDQFRMLITEIGNALGYVRMVRSAGMNYCSNAIKFVPDLNHT-HFKFEAYAGDGL 1161          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: H3GGG2_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3GGG2_PHYRM)

HSP 1 Score: 154 bits (388), Expect = 4.000e-40
Identity = 73/152 (48.03%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNR--KACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRGK 450
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFLFD+ I+S+L  E++W++++R  K  D+KYP +RA Q +K+IR+LG +  G +F+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+PDL     F+F  +   G+   K
Sbjct: 1005 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLFDEYIKSYLQREKRWYKKHRDDKEVDNKYPFDRAFQFNKDIRKLGVSDSGKTFLDQFRMLITEIGNALGYVRMVRSAGMNYCSNAIKFVPDLNHT-HFKFEAYAGDGVAEEK 1155          
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Match: G4YZF6_PHYSP (Uncharacterized protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=G4YZF6_PHYSP)

HSP 1 Score: 154 bits (388), Expect = 4.070e-40
Identity = 73/152 (48.03%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLSAERKWFRRNR--KACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLITQMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRGK 450
            ++  S+A S+R HG G++NTTVN  Y++L  KF +FSQFLFD+ I+S+L  E++W++++R  K  D+KYP +RA Q +K+IR+LG +  G +F+D+FR+LIT++GNALG+VRMVRSAGM   + A++F+PDL     F+F  +   G+   K
Sbjct: 1035 INIHSIASSIRTHGMGIMNTTVNFTYQFLTKKFDIFSQFLFDEYIKSYLQREKRWYKKHRDDKEVDNKYPFDRAFQFNKDIRKLGVSDSGKTFLDQFRMLITEIGNALGYVRMVRSAGMNYCSNAIKFVPDLNHT-HFKFEAYAGDGVAEEK 1185          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111521.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2FF78_9STRA2.540e-4553.02Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2MKL7_9STRA3.530e-4454.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
F0YB79_AURAN1.310e-4156.30Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A329R7Z2_9STRA1.530e-4147.37Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A024G7L8_9STRA8.520e-4150.34Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WZP8_9STRA2.940e-4049.66KIAA1033 putative n=1 Tax=Albugo laibachii Nc14 Ta... [more]
A0A6A4FUD0_9STRA2.990e-4048.03WASH complex subunit 4 n=2 Tax=Peronosporaceae Tax... [more]
K3X002_GLOUD3.980e-4049.32Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GGG2_PHYRM4.000e-4048.03Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
G4YZF6_PHYSP4.070e-4048.03Uncharacterized protein n=6 Tax=Peronosporaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111521contigM-pyrifera_M_contig111521:6..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.8
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog44056.XP_009037722.1
KEGG koko:K18465
KEGG Pathwayko04144,map04144
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.endosome organization
EggNOG OGsKOG3578@1,KOG3578@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size510
Cds size510
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.727979-CDS-M-pyrifera_M_contig111521:5..5151622815627.727979-CDS-M-pyrifera_M_contig111521:5..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111521 6..515 +
1692277494.5611994-CDS-M-pyrifera_M_contig111521:5..5151692277494.5611994-CDS-M-pyrifera_M_contig111521:5..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111521 6..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111521.2396.1prot_M-pyrifera_M_contig111521.2396.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111521 6..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111521.2396.1

>prot_M-pyrifera_M_contig111521.2396.1 ID=prot_M-pyrifera_M_contig111521.2396.1|Name=mRNA_M-pyrifera_M_contig111521.2396.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
VSARSVAGSVRQHGAGMLNTTVNVAYRYLAHKFRVFSQFLFDDDIRSFLS
AERKWFRRNRKACDDKYPLERARQLHKEIRRLGTTAKGISFIDKFRLLIT
QMGNALGFVRMVRSAGMRSAAGAVRFIPDLETLKEFRFAQHCQQGMVRGK
GGVKDGAEEDDFDDSEEEDE
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mRNA from alignment at M-pyrifera_M_contig111521:6..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111521.2396.1 ID=mRNA_M-pyrifera_M_contig111521.2396.1|Name=mRNA_M-pyrifera_M_contig111521.2396.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig111521:6..515+ (Macrocystis pyrifera P11B4 male)
GTTTCTGCTCGCTCTGTGGCGGGATCCGTGCGACAGCACGGCGCCGGGAT GCTCAACACCACTGTGAACGTGGCGTACCGCTACCTGGCCCATAAGTTCC GCGTCTTCTCCCAGTTCCTCTTCGACGACGACATCCGCTCCTTCCTCTCC GCCGAACGCAAGTGGTTCCGCAGAAACCGAAAGGCCTGCGACGACAAGTA CCCGCTGGAGCGGGCCAGGCAGCTGCACAAGGAGATCCGCCGCCTCGGCA CCACTGCCAAGGGCATCTCCTTCATCGACAAGTTCCGCCTCCTCATCACC CAAATGGGCAATGCGCTGGGCTTTGTCAGAATGGTACGATCCGCGGGAAT GCGGTCTGCTGCCGGAGCCGTGCGGTTCATTCCAGATCTGGAAACGCTCA AGGAGTTTCGATTCGCGCAACACTGCCAGCAAGGAATGGTGCGAGGCAAA GGAGGCGTGAAGGACGGCGCGGAAGAGGACGATTTCGACGACAGCGAAGA AGAGGATGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111521:6..515+

>mRNA_M-pyrifera_M_contig111521.2396.1 ID=mRNA_M-pyrifera_M_contig111521.2396.1|Name=mRNA_M-pyrifera_M_contig111521.2396.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig111521:6..515+ (Macrocystis pyrifera P11B4 male)
GTTTCTGCTCGCTCTGTGGCGGGATCCGTGCGACAGCACGGCGCCGGGAT
GCTCAACACCACTGTGAACGTGGCGTACCGCTACCTGGCCCATAAGTTCC
GCGTCTTCTCCCAGTTCCTCTTCGACGACGACATCCGCTCCTTCCTCTCC
GCCGAACGCAAGTGGTTCCGCAGAAACCGAAAGGCCTGCGACGACAAGTA
CCCGCTGGAGCGGGCCAGGCAGCTGCACAAGGAGATCCGCCGCCTCGGCA
CCACTGCCAAGGGCATCTCCTTCATCGACAAGTTCCGCCTCCTCATCACC
CAAATGGGCAATGCGCTGGGCTTTGTCAGAATGGTACGATCCGCGGGAAT
GCGGTCTGCTGCCGGAGCCGTGCGGTTCATTCCAGATCTGGAAACGCTCA
AGGAGTTTCGATTCGCGCAACACTGCCAGCAAGGAATGGTGCGAGGCAAA
GGAGGCGTGAAGGACGGCGCGGAAGAGGACGATTTCGACGACAGCGAAGA
AGAGGATGAGGTTTCTGCTCGCTCTGTGGCGGGATCCGTGCGACAGCACG
GCGCCGGGATGCTCAACACCACTGTGAACGTGGCGTACCGCTACCTGGCC
CATAAGTTCCGCGTCTTCTCCCAGTTCCTCTTCGACGACGACATCCGCTC
CTTCCTCTCCGCCGAACGCAAGTGGTTCCGCAGAAACCGAAAGGCCTGCG
ACGACAAGTACCCGCTGGAGCGGGCCAGGCAGCTGCACAAGGAGATCCGC
CGCCTCGGCACCACTGCCAAGGGCATCTCCTTCATCGACAAGTTCCGCCT
CCTCATCACCCAAATGGGCAATGCGCTGGGCTTTGTCAGAATGGTACGAT
CCGCGGGAATGCGGTCTGCTGCCGGAGCCGTGCGGTTCATTCCAGATCTG
GAAACGCTCAAGGAGTTTCGATTCGCGCAACACTGCCAGCAAGGAATGGT
GCGAGGCAAAGGAGGCGTGAAGGACGGCGCGGAAGAGGACGATTTCGACG
ACAGCGAAGAAGAGGATGAG
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