mRNA_M-pyrifera_M_contig110942.2297.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110942.2297.1
Unique NamemRNA_M-pyrifera_M_contig110942.2297.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Match: A0A2D7S036_9ACTN (Uncharacterized protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D7S036_9ACTN)

HSP 1 Score: 145 bits (365), Expect = 2.040e-37
Identity = 98/204 (48.04%), Postives = 124/204 (60.78%), Query Frame = 1
Query:    1 QPPYGVLYPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRRLTDVGFGPALAAAAIGASLPAAWLTGTVVWAERLLPLLVALAVLLFLRLREAPSLGRGAGVALVAAALFAAHPRT-------VAVALVVLAAAGWILVVGQRRRLATGVAGAGLIGLAAAELARRALAQATFGADATYDGADLASRRGFDELPD 591
            Q PYG+LYPA L PGWL GLD+G M+++A+  NA+ GA +VPVL A LRRL  +   PA+AAA  GA +PA  LTG++ W+ERL  LLVA A L+  R  +  S   G    + AAA+FAAHPR        + V  V L   GW  VVG        + GAG+  L   E  R A+A+A FG+D TYD ADLASRRG   +P+
Sbjct:   60 QAPYGLLYPATLVPGWLLGLDDGGMLLWARTVNALCGALMVPVLTAFLRRLDGLRPVPAIAAATAGAMMPAFLLTGSITWSERLSVLLVACAALVTARSWDERSGLDGFLAVVTAAAMFAAHPRLGPPALVLIVVVAVALRRLGWARVVG--------LLGAGVAALWLVEWVRAAVAEAAFGSDGTYDAADLASRRGLGLVPE 255          
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Match: A0A358A4P2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A4P2_9ACTN)

HSP 1 Score: 143 bits (360), Expect = 1.060e-36
Identity = 97/201 (48.26%), Postives = 124/201 (61.69%), Query Frame = 1
Query:    1 QPPYGVLYPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRRLTDVGFGPALAAAAIGASLPAAWLTGTVVWAERLLPLLVALAVLLFLRLREAPSLGRGAGVALVAAALFAAHPRTVAVALVVLAAAGWILVVGQRRRLATG----VAGAGLIGLAAAELARRALAQATFGADATYDGADLASRRGFDELPD 591
            Q PYGVLYP +L PGWL GLD+G M+ +A+  NA+ GA +VPVL + LRRL  V   PA+AAA  GA +PA  LTG++ W+ERL  LLVA A L+  R  +  S   G    + AAA+FAAHPR    ALV++A   +       R+L       V GAG+  L   E  R A+A+A FG+D TYD ADLASRRG   +P+
Sbjct:   60 QAPYGVLYPTMLVPGWLLGLDDGGMLFWARTVNALCGALMVPVLTSFLRRLDGVRPVPAIAAATAGAMMPAFLLTGSIAWSERLGVLLVACAALVIARSWDEQSGLNGFLAVITAAAMFAAHPRLGPPALVLIAVVAF-----ASRQLGWARFFRVLGAGVAALWVVEWVRAAVAEAAFGSDGTYDAADLASRRGIGLVPE 255          
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Match: A0A6B1AXD5_9ACTN (Phospholipid carrier-dependent glycosyltransferase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AXD5_9ACTN)

HSP 1 Score: 132 bits (333), Expect = 1.250e-32
Identity = 76/131 (58.02%), Postives = 96/131 (73.28%), Query Frame = 1
Query:    1 QPPYGVLYPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRRLTDVGFGPALAAAAIGASLPAAWLTGTVVWAERLLPLLVALAVLLFLRLREAPSLGRGAGVALVAAALFAAHPRTVAVALV 393
            QPPYGVLY A+LAPGW  GL+E  M+++A++ N +LGAA+VPVL+ ++RRLT      +LAAA +GASLPA   T ++VW ERLLPLLVAL+VL  +R  E  S+GR   V  +AAALFA HPR  A ALV
Sbjct:   83 QPPYGVLYSALLAPGWALGLNETSMLIWARILNGLLGAAVVPVLYFVVRRLTGASRRWSLAAAVVGASLPAHMSTASIVWTERLLPLLVALSVLCLIRFVERRSIGRAITVVGIAAALFAGHPRMGACALV 213          
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Match: A0A3M2G786_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G786_ACTSX)

HSP 1 Score: 92.8 bits (229), Expect = 1.750e-18
Identity = 74/202 (36.63%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 QPPYGVLYPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRRLTDVGFGPALAAAAIGASLPAAWLTGTVVWAERLLPLLVALAVLLFLR-LREAPSLG-------RGAGVALVAAALFAAHPRTVAVALV--VLAAAGWILVVGQRRRLATGV-AGAGLIGLAAAELARRALAQATFGADATYDGADLASRRG 573
            QPPYG+LYP ++AP W  GL  G ++V+A++ +   G+  V V   + RR+  +    AL  A +  + PA  +T ++ W+ERL  L V+L V +    +   PS         RGA V + A A+ A HPR V VA+   ++AA  W     +RR +A  V AG+ L+ +A AE+A R + +A  G+  TY  A+LA+ RG
Sbjct:   82 QPPYGLLYPLLVAPAWAMGLSGGGVLVWARLVSVAAGSGTVVVAHRLARRVFRLDPVAALVVALVAGTTPALVVTASITWSERLAGLTVSLLVAVVAEAVGRDPSTATTRQVATRGAVVVVAAGAVAATHPRLVPVAVAGALVAAVAW-----RRRPVAAAVVAGSALLVVAGAEVAGRLVQEAALGSGGTYGAAELAASRG 278          
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Match: A0A7W0REG6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0REG6_9ACTN)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-6
Identity = 65/173 (37.57%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    4 PPYGVLYPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRRLTDVGFGPALAAAAIGASLPAAWLTGTVVWAERL-LPLLVALAVLLFLRLREAPSLGRGAGVALVAAALFAAHPRTVAV---ALVVLAAAGWILVVGQRRRLATGVAGAGLIGLAAAELARRAL 510
            P YG  +  V+AP + F     ++    Q+ NAVL A+L+P+LF + RR+       ALAAAA+GAS+PA          E L LPL+VA A+  +L     P   R   +A  A  L+A+H R V +    +++L    W+ +V  R  LA   A  GL+G AA  L RRAL
Sbjct:   74 PYYGFGWSLVVAPLFWFIDQPDRLFRAVQLVNAVLAASLLPLLFLLCRRVLSARPAVALAAAAVGASVPAVTFNAGHALTENLVLPLVVATALASWLLCTPRPWWQR-IWLAPGAVLLYASHARFVVLLPLVVLLLLTGAWVRLVPVR--LAAANATLGLVGTAAVLLLRRAL 243          
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Match: A0A2W2EGD9_9ACTN (PMT_2 domain-containing protein n=2 Tax=Micromonospora craterilacus TaxID=1655439 RepID=A0A2W2EGD9_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 6.040e-5
Identity = 50/141 (35.46%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   22 YPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRRLTDVGFGPALAAAAIGASLPAAWLTGTVVWAERLLPLLVALAVLLFLRLREAPSLGRGAGVALVAAALFAAHPRTVAVALVVLAAAGWILVVGQRRRL 444
            YP ++AP +L   D     +  +V NA L AAL+P+ + + RRL ++   PAL AAA+ A+LPAA     V   + +L  L+   +L   RL E P     A    +A A    H R V   ++V   AG +L++  RRRL
Sbjct:  135 YPLLIAPAFLLDRDFVDTYLLVRVVNAALNAALLPLAYLLGRRLLNLPRWPALVAAAVAATLPAAVFYAGVAMTDAVLAPLLVGWLLAVHRLVERPGPLTAAVAGTLAGAGHLLHSRGV---VIVAGYAGLVLLLVGRRRL 272          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110942.2297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2D7S036_9ACTN2.040e-3748.04Uncharacterized protein n=5 Tax=Acidimicrobiaceae ... [more]
A0A358A4P2_9ACTN1.060e-3648.26Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6B1AXD5_9ACTN1.250e-3258.02Phospholipid carrier-dependent glycosyltransferase... [more]
A0A3M2G786_ACTSX1.750e-1836.63Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
A0A7W0REG6_9ACTN1.240e-637.57Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A2W2EGD9_9ACTN6.040e-535.46PMT_2 domain-containing protein n=2 Tax=Micromonos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110942contigM-pyrifera_M_contig110942:3..593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.4612806-CDS-M-pyrifera_M_contig110942:2..5931622815621.4612806-CDS-M-pyrifera_M_contig110942:2..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110942 3..593 +
1692277491.4864762-CDS-M-pyrifera_M_contig110942:2..5931692277491.4864762-CDS-M-pyrifera_M_contig110942:2..593Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110942 3..593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110942.2297.1prot_M-pyrifera_M_contig110942.2297.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110942 3..593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110942.2297.1

>prot_M-pyrifera_M_contig110942.2297.1 ID=prot_M-pyrifera_M_contig110942.2297.1|Name=mRNA_M-pyrifera_M_contig110942.2297.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=197bp
QPPYGVLYPAVLAPGWLFGLDEGQMIVFAQVSNAVLGAALVPVLFAILRR
LTDVGFGPALAAAAIGASLPAAWLTGTVVWAERLLPLLVALAVLLFLRLR
EAPSLGRGAGVALVAAALFAAHPRTVAVALVVLAAAGWILVVGQRRRLAT
GVAGAGLIGLAAAELARRALAQATFGADATYDGADLASRRGFDELPD
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mRNA from alignment at M-pyrifera_M_contig110942:3..593+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110942.2297.1 ID=mRNA_M-pyrifera_M_contig110942.2297.1|Name=mRNA_M-pyrifera_M_contig110942.2297.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=591bp|location=Sequence derived from alignment at M-pyrifera_M_contig110942:3..593+ (Macrocystis pyrifera P11B4 male)
CAGCCCCCGTATGGCGTGCTCTATCCCGCGGTGCTCGCGCCCGGCTGGCT GTTCGGGCTCGACGAGGGTCAGATGATCGTGTTTGCCCAGGTCAGCAATG CTGTGCTGGGAGCAGCCCTGGTGCCGGTGCTGTTCGCGATTCTTCGGCGC CTGACCGACGTGGGGTTCGGGCCGGCACTCGCGGCGGCGGCCATCGGTGC GTCGCTCCCGGCCGCATGGCTCACGGGCACGGTGGTGTGGGCCGAGCGGC TCCTGCCCCTGCTGGTCGCTCTCGCCGTCCTGCTGTTCCTCCGACTGCGC GAAGCTCCGAGTCTGGGCCGCGGCGCAGGGGTCGCGTTGGTGGCAGCGGC CCTGTTCGCCGCCCATCCCCGCACGGTGGCCGTGGCATTGGTGGTGCTCG CTGCGGCGGGATGGATCCTCGTGGTCGGCCAGCGCCGTCGCCTCGCCACC GGTGTCGCCGGCGCGGGGCTCATCGGGCTTGCGGCGGCTGAGCTCGCTCG CCGCGCACTCGCGCAGGCGACGTTCGGTGCGGACGCCACCTACGACGGCG CCGATCTCGCCAGTCGACGCGGGTTCGACGAGCTGCCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110942:3..593+

>mRNA_M-pyrifera_M_contig110942.2297.1 ID=mRNA_M-pyrifera_M_contig110942.2297.1|Name=mRNA_M-pyrifera_M_contig110942.2297.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1182bp|location=Sequence derived from alignment at M-pyrifera_M_contig110942:3..593+ (Macrocystis pyrifera P11B4 male)
CAGCCCCCGTATGGCGTGCTCTATCCCGCGGTGCTCGCGCCCGGCTGGCT
GTTCGGGCTCGACGAGGGTCAGATGATCGTGTTTGCCCAGGTCAGCAATG
CTGTGCTGGGAGCAGCCCTGGTGCCGGTGCTGTTCGCGATTCTTCGGCGC
CTGACCGACGTGGGGTTCGGGCCGGCACTCGCGGCGGCGGCCATCGGTGC
GTCGCTCCCGGCCGCATGGCTCACGGGCACGGTGGTGTGGGCCGAGCGGC
TCCTGCCCCTGCTGGTCGCTCTCGCCGTCCTGCTGTTCCTCCGACTGCGC
GAAGCTCCGAGTCTGGGCCGCGGCGCAGGGGTCGCGTTGGTGGCAGCGGC
CCTGTTCGCCGCCCATCCCCGCACGGTGGCCGTGGCATTGGTGGTGCTCG
CTGCGGCGGGATGGATCCTCGTGGTCGGCCAGCGCCGTCGCCTCGCCACC
GGTGTCGCCGGCGCGGGGCTCATCGGGCTTGCGGCGGCTGAGCTCGCTCG
CCGCGCACTCGCGCAGGCGACGTTCGGTGCGGACGCCACCTACGACGGCG
CCGATCTCGCCAGTCGACGCGGGTTCGACGAGCTGCCCGACCAGCCCCCG
TATGGCGTGCTCTATCCCGCGGTGCTCGCGCCCGGCTGGCTGTTCGGGCT
CGACGAGGGTCAGATGATCGTGTTTGCCCAGGTCAGCAATGCTGTGCTGG
GAGCAGCCCTGGTGCCGGTGCTGTTCGCGATTCTTCGGCGCCTGACCGAC
GTGGGGTTCGGGCCGGCACTCGCGGCGGCGGCCATCGGTGCGTCGCTCCC
GGCCGCATGGCTCACGGGCACGGTGGTGTGGGCCGAGCGGCTCCTGCCCC
TGCTGGTCGCTCTCGCCGTCCTGCTGTTCCTCCGACTGCGCGAAGCTCCG
AGTCTGGGCCGCGGCGCAGGGGTCGCGTTGGTGGCAGCGGCCCTGTTCGC
CGCCCATCCCCGCACGGTGGCCGTGGCATTGGTGGTGCTCGCTGCGGCGG
GATGGATCCTCGTGGTCGGCCAGCGCCGTCGCCTCGCCACCGGTGTCGCC
GGCGCGGGGCTCATCGGGCTTGCGGCGGCTGAGCTCGCTCGCCGCGCACT
CGCGCAGGCGACGTTCGGTGCGGACGCCACCTACGACGGCGCCGATCTCG
CCAGTCGACGCGGGTTCGACGAGCTGCCCGAC
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