mRNA_M-pyrifera_M_contig99766.22932.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig99766.22932.1
Unique Name	mRNA_M-pyrifera_M_contig99766.22932.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A3L8S7N3_CHLGU (40S ribosomal protein S29 n=1 Tax=Chloebia gouldiae TaxID=44316 RepID=A0A3L8S7N3_CHLGU)

HSP 1 Score: 98.6 bits (244), Expect = 7.480e-25
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGP-----SRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKV 258
            M H  ++ SHPRKFG+GSRSW V   L F                PALT       SRVC+N+HGLIRKY +N+CRQCFR+YAKDIGF+KV
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSWSV---LPFALRGPWLPRSPSHPPRPALTASLCSPHSRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKV 88

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: RS29_GRIJA (40S ribosomal protein S29 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=RS29_GRIJA)

HSP 1 Score: 93.6 bits (231), Expect = 1.420e-23
Identity = 44/87 (50.57%), Postives = 49/87 (56.32%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M H N+W SHPRK+GKGSRS                                ++C NKHGLIRKY MNICRQCFREYAKDIGF+K R
Sbjct:    1 MGHQNIWYSHPRKYGKGSRS-------------------------------CKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A6A5N100_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5N100_LUPAL)

HSP 1 Score: 92.4 bits (228), Expect = 4.730e-23
Identity = 42/87 (48.28%), Postives = 50/87 (57.47%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M HSNVWNSHP+ +G GSR+W+V                         T  +RVC N HGLIRKY +N CRQCFR  AK+IGF+K R
Sbjct:    1 MGHSNVWNSHPKNYGPGSRTWYV-------------------------TASNRVCGNPHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 62

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A0D3HUX4_9ORYZ (Uncharacterized protein n=1 Tax=Oryza barthii TaxID=65489 RepID=A0A0D3HUX4_9ORYZ)

HSP 1 Score: 92.0 bits (227), Expect = 1.120e-22
Identity = 44/87 (50.57%), Postives = 51/87 (58.62%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M HSNVWNSHP+ +G GSR W+       C      +P    S    +T   RVC N HGLIRKY +  CRQCFR  AKDIGF+K R
Sbjct:    1 MGHSNVWNSHPKNYGPGSRVWYG-----CCSPSSPPSPTSSASDR-GVTWVGRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 81

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A0E0FCF3_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0FCF3_9ORYZ)

HSP 1 Score: 92.0 bits (227), Expect = 1.840e-22
Identity = 49/99 (49.49%), Postives = 54/99 (54.55%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWF----VPPPLRFCXXXXXXAPLQRESGGPALT--------GPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M HSNVWNSHP+ +G GSR W+     PPPL         A     SG    T        G  RVC N HGLIRKY +  CRQCFR  AKDIGF+K R
Sbjct:    1 MGHSNVWNSHPKNYGPGSRVWYGCFSPPPPLLHRPRRQIVALPGSISGLEYFTWMIPGIKIGVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR 99

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A367JG11_RHIAZ (40S ribosomal protein S29 n=5 Tax=Mucorineae TaxID=1344963 RepID=A0A367JG11_RHIAZ)

HSP 1 Score: 87.0 bits (214), Expect = 5.530e-21
Identity = 44/87 (50.57%), Postives = 48/87 (55.17%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            MAHSNVWNSHP+ FGKGSR                                 RVCA++ GLIRKY +NICRQCFREYA DIGF K R
Sbjct:    1 MAHSNVWNSHPKTFGKGSRQ-------------------------------CRVCAHRAGLIRKYNLNICRQCFREYANDIGFHKYR 56

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A061RP44_9CHLO (Small subunit ribosomal protein S29e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RP44_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 5.530e-21
Identity = 42/87 (48.28%), Postives = 49/87 (56.32%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M H+ VWNSHP+ +GKGSRS                                RVC N+HGLIRKY +NICRQCFREYAKDIGF K++
Sbjct:    1 MGHAEVWNSHPKGYGKGSRS-------------------------------CRVCGNQHGLIRKYGLNICRQCFREYAKDIGFQKMK 56

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: E9J8N4_SOLIN (40S ribosomal protein S29 (Fragment) n=1 Tax=Solenopsis invicta TaxID=13686 RepID=E9J8N4_SOLIN)

HSP 1 Score: 88.2 bits (217), Expect = 9.930e-21
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M   N+W SHPRK+G+GSRS         C      + ++           SR CAN+HGLIRKY +NICRQCFREYA DIGF KV+
Sbjct:    1 MGFQNIWYSHPRKYGQGSRS---------CTKGYTNSAIKN----------SRACANRHGLIRKYGLNICRQCFREYAADIGFKKVK 68

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BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: F4NZV5_BATDJ (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4NZV5_BATDJ)

HSP 1 Score: 85.9 bits (211), Expect = 1.750e-20
Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXAPLQRESGGPALTGPSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKV 258
            MAH NV+NSHPR+FGKGSR                                 RVCA+K GLIRKY ++ICRQCFREYA DIGF+KV
Sbjct:    1 MAHDNVYNSHPRRFGKGSRQ-------------------------------CRVCAHKAGLIRKYNLDICRQCFREYASDIGFIKV 55

[Close]

BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Match: A0A507B1M1_9PEZI (Uncharacterized protein n=1 Tax=Thyridium curvatum TaxID=1093900 RepID=A0A507B1M1_9PEZI)

HSP 1 Score: 86.7 bits (213), Expect = 1.830e-20
Identity = 46/93 (49.46%), Postives = 56/93 (60.22%), Query Frame = 1

Query:    1 MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCXXXXXXA-PLQRESGGPALTGP-----SRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR 261
            M+H +VWNS PRK+GKGSRSW       F          +Q ++     T       SRVC ++ GLIRKY ++ICRQCFRE A DIGFVKVR
Sbjct:    1 MSHESVWNSRPRKYGKGSRSW-----RNFAGGEGTVGNQVQGDTEEACFTNVFVRNYSRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKVR 88

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig99766.22932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3L8S7N3_CHLGU	7.480e-25	53.85	40S ribosomal protein S29 n=1 Tax=Chloebia gouldia...	[more]
RS29_GRIJA	1.420e-23	50.57	40S ribosomal protein S29 n=1 Tax=Griffithsia japo...	[more]
A0A6A5N100_LUPAL	4.730e-23	48.28	Uncharacterized protein n=1 Tax=Lupinus albus TaxI...	[more]
A0A0D3HUX4_9ORYZ	1.120e-22	50.57	Uncharacterized protein n=1 Tax=Oryza barthii TaxI...	[more]
A0A0E0FCF3_9ORYZ	1.840e-22	49.49	Uncharacterized protein n=1 Tax=Oryza meridionalis...	[more]
A0A367JG11_RHIAZ	5.530e-21	50.57	40S ribosomal protein S29 n=5 Tax=Mucorineae TaxID...	[more]
A0A061RP44_9CHLO	5.530e-21	48.28	Small subunit ribosomal protein S29e n=1 Tax=Tetra...	[more]
E9J8N4_SOLIN	9.930e-21	49.43	40S ribosomal protein S29 (Fragment) n=1 Tax=Solen...	[more]
F4NZV5_BATDJ	1.750e-20	50.00	Uncharacterized protein n=1 Tax=Batrachochytrium d...	[more]
A0A507B1M1_9PEZI	1.830e-20	49.46	Uncharacterized protein n=1 Tax=Thyridium curvatum...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig99766	contig	M-pyrifera_M_contig99766:26..397 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Arthropoda
Seed ortholog score	94.7
Seed ortholog evalue	2.2e-17
Seed eggNOG ortholog	34740.HMEL005089-PA
Preferred name	RpS29
KEGG ko	ko:K02980
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
Hectar predicted targeting category	other localisation
GOs	GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.	Ribosomal protein S14p/S29e
EggNOG OGs	3A8G0@33154,3BUAG@33208,3DAJH@33213,3SPDP@50557,4212Y@6656,447PG@7088,COG0199@1,KOG3506@2759
COG Functional cat.	J
Best tax level	Lepidoptera
Best eggNOG OG	NA\|NA\|NA
BRITE	br01610,ko00000,ko00001,ko00002,ko03011
Exons	2
Model size	261
Cds size	261
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816914.6381116-CDS-M-pyrifera_M_contig99766:25..133	1622816914.6381116-CDS-M-pyrifera_M_contig99766:25..133	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig99766 26..133 +
1692278252.80606-CDS-M-pyrifera_M_contig99766:25..133	1692278252.80606-CDS-M-pyrifera_M_contig99766:25..133	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig99766 26..133 +
1622816914.6511514-CDS-M-pyrifera_M_contig99766:244..397	1622816914.6511514-CDS-M-pyrifera_M_contig99766:244..397	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig99766 245..397 +
1692278252.8184638-CDS-M-pyrifera_M_contig99766:244..397	1692278252.8184638-CDS-M-pyrifera_M_contig99766:244..397	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig99766 245..397 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig99766.22932.1	prot_M-pyrifera_M_contig99766.22932.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig99766 26..397 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig99766:26..397+
coding sequence from alignment at M-pyrifera_M_contig99766:26..397+

protein sequence of mRNA_M-pyrifera_M_contig99766.22932.1

>prot_M-pyrifera_M_contig99766.22932.1 ID=prot_M-pyrifera_M_contig99766.22932.1|Name=mRNA_M-pyrifera_M_contig99766.22932.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
MAHSNVWNSHPRKFGKGSRSWFVPPPLRFCCAAAAAAPLQRESGGPALTG
PSRVCANKHGLIRKYQMNICRQCFREYAKDIGFVKVR

mRNA from alignment at M-pyrifera_M_contig99766:26..397+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig99766.22932.1 ID=mRNA_M-pyrifera_M_contig99766.22932.1|Name=mRNA_M-pyrifera_M_contig99766.22932.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig99766:26..397+ (Macrocystis pyrifera P11B4 male)
ATGGCCCACTCCAACGTCTGGAACAGTCACCCCCGCAAGTTCGGCAAGGG
CTCTCGCTCGTGGTTCGTACCGCCACCCCTGCGCTTTTGCTGCGCCGCAG
CCGCCGCCGTCCGCTCCTGCCGCCGCTCGCGCCGCAGCAGCTGTGCCAGT
GCCTTGTGGCTTTGCCTCTGCTTCTCTCTTGCTATGGGTGAAATTTGTGT
AAAGTTTGGGCGGCGACAGGCGCCGCTGCAAAGGGAAAGTGGGGGCCCGG
CGCTGACGGGGCCTAGCCGCGTGTGCGCCAACAAGCACGGTCTCATCCGC
AAGTACCAGATGAACATCTGCAGGCAGTGCTTCCGCGAGTACGCCAAGGA
CATTGGCTTCGTGAAGGTGCGT

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99766:26..397+

>mRNA_M-pyrifera_M_contig99766.22932.1 ID=mRNA_M-pyrifera_M_contig99766.22932.1|Name=mRNA_M-pyrifera_M_contig99766.22932.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig99766:26..397+ (Macrocystis pyrifera P11B4 male)
ATGGCCCACTCCAACGTCTGGAACAGTCACCCCCGCAAGTTCGGCAAGGG
CTCTCGCTCGTGGTTCGTACCGCCACCCCTGCGCTTTTGCTGCGCCGCAG
CCGCCGCCATGGCCCACTCCAACGTCTGGAACAGTCACCCCCGCAAGTTC
GGCAAGGGCTCTCGCTCGTGGTTCGTACCGCCACCCCTGCGCTTTTGCTG
CGCCGCAGCCGCCGCCGCGCCGCTGCAAAGGGAAAGTGGGGGCCCGGCGC
TGACGGGGCCTAGCCGCGTGTGCGCCAACAAGCACGGTCTCATCCGCAAG
TACCAGATGAACATCTGCAGGCAGTGCTTCCGCGAGTACGCCAAGGACAT
TGGCTTCGTGAAGGTGCGTGCGCCGCTGCAAAGGGAAAGTGGGGGCCCGG
CGCTGACGGGGCCTAGCCGCGTGTGCGCCAACAAGCACGGTCTCATCCGC
AAGTACCAGATGAACATCTGCAGGCAGTGCTTCCGCGAGTACGCCAAGGA
CATTGGCTTCGTGAAGGTGCGT