mRNA_M-pyrifera_M_contig99753.22928.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99753.22928.1
Unique NamemRNA_M-pyrifera_M_contig99753.22928.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A1Y2HK19_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HK19_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 2.290e-10
Identity = 44/113 (38.94%), Postives = 57/113 (50.44%), Query Frame = 1
Query:    1 STHRMALSRPVLPLRLWGSYVRSLEERPLRTKAATSAVLLALQECIVQVIRKRPD------LLRTLKLALYGCLVSGPMGHVLY---------SSIASATSGLPGALNGIAQL 294
            S+   A SRP     LW  Y+  L  RP+ TKA TSA L  LQE +   +   P+      L++  K+A YG LVSGP+GH LY         SS+AS    L GA   +A +
Sbjct:    5 SSSGAASSRPGSASLLWAKYLALLATRPVLTKAGTSATLNFLQEAVANALATDPNASSADALIKASKMAAYGLLVSGPLGHYLYDLLNKVFDGSSLASMVGQLVGANVAVAPI 117          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A4P9YAQ4_9FUNG (Uncharacterized protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9YAQ4_9FUNG)

HSP 1 Score: 63.2 bits (152), Expect = 4.840e-10
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQV------IRKRPDLLRTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLL 300
            Y+  LEE PLRTK+ T+  L   QE + QV      I    D +R +K+ALYG L+SGP+GH LY+++     G  G    +  LLL
Sbjct:   11 YLVQLEENPLRTKSLTAGALTGAQEALAQVKVSLVKILSSLDGIRIIKMALYGLLISGPLGHTLYAALGRIIGGRKGPRWALLTLLL 97          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A0W0FGI5_9AGAR (Uncharacterized protein n=2 Tax=Moniliophthora roreri TaxID=221103 RepID=A0A0W0FGI5_9AGAR)

HSP 1 Score: 57.8 bits (138), Expect = 7.090e-8
Identity = 41/102 (40.20%), Postives = 50/102 (49.02%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQVI--------------------RKRPDLLRTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLLV 303
            Y+  L   PLRTKA T+A+L  LQE +   I                    R R D  R  K+ALYG LVS PMGH L  S+  A +G  GA   +AQ+L V
Sbjct:   19 YLAQLNAHPLRTKAITTAILCFLQEVVANHIARTSVKRVSKDGSIIEHLLARARVDG-RAFKMALYGFLVSAPMGHFLVGSLQKAFAGKTGAKARVAQILAV 119          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A167P0Q6_CALVF (Uncharacterized protein n=2 Tax=Calocera TaxID=29888 RepID=A0A167P0Q6_CALVF)

HSP 1 Score: 57.0 bits (136), Expect = 1.550e-7
Identity = 43/105 (40.95%), Postives = 52/105 (49.52%), Query Frame = 1
Query:   55 SYVRSLEERPLRTKAATSAVLLALQECIVQ-------------VIRKRPDLL----------RTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLL 300
            +Y+R+L +RPL TK  T  VL  LQE +               V R  P+L           R LKLALYG LVS PMGH L   I  A SG+ GA   I Q+L+
Sbjct:   19 AYLRALAKRPLLTKMITGGVLSFLQEPLSSSLAHLPPPEPSPAVSRLSPELAILLARLHISPRALKLALYGFLVSAPMGHFLVLLITKAFSGVQGAKARIGQILM 123          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A2T6ZME6_TUBBO (Uncharacterized protein n=1 Tax=Tuber borchii TaxID=42251 RepID=A0A2T6ZME6_TUBBO)

HSP 1 Score: 56.6 bits (135), Expect = 2.370e-7
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQVIRKRPD------LLRTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLL 300
            Y+  L+  PLRTK  TS  L ALQE I  V     D        R  K+A+YG L+S P+GH+L + +  A +G     + +AQ+L+
Sbjct:   36 YLSQLQHNPLRTKMLTSGTLSALQEVIASVYAGDRDKKGSYITARVPKMAIYGALISAPLGHILVALLQKAFAGRTSGKSKLAQILV 122          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A5J5FBV7_9PEZI (Uncharacterized protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5FBV7_9PEZI)

HSP 1 Score: 56.2 bits (134), Expect = 2.970e-7
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQVI---RKRPDLL---RTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLL 300
            Y+R L+E PLRTK  TS  L ALQE +   I   R R       R  K+A+YG L+S P+GH+L +++  A +G       + Q+L+
Sbjct:   35 YLRELQENPLRTKMLTSGALSALQEVLASFIAGDRNRHGSYFTPRVPKMAIYGSLISAPLGHILVTALQKAFAGRTSTKAKVFQILV 121          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A8H5HLR5_9AGAR (Uncharacterized protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5HLR5_9AGAR)

HSP 1 Score: 55.5 bits (132), Expect = 4.920e-7
Identity = 37/99 (37.37%), Postives = 50/99 (50.51%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQVIRKRPDL-------------------LRTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLL 297
            Y+ SL   PLRTKA T+A+L  LQE +   + + P                     LR LK+A+YG LVS P+GH L  ++  A +G  G    IAQ+L
Sbjct:   17 YLSSLATHPLRTKAITTALLCFLQEVLGSNLARLPAQRPPKNSPFLYKVLASYHVDLRALKMAIYGFLVSAPLGHFLVGALQKAFAGKTGTRAKIAQIL 115          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: D5GLC4_TUBMM (Uncharacterized protein n=3 Tax=Tuberaceae TaxID=40289 RepID=D5GLC4_TUBMM)

HSP 1 Score: 55.5 bits (132), Expect = 5.940e-7
Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQVIR----KRPDLL--RTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLL 300
            Y+  L+  PLRTK  TS  L ALQE +  V      K+   L  R  K+A+YG L+S P+GH+L + +  A +G     + +AQ+L+
Sbjct:   36 YLSQLQHNPLRTKMLTSGTLSALQEILASVYAGDRDKKGSYLTPRVPKMAIYGALISAPLGHILVTLLQKAFAGRTSGKSKLAQILV 122          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: A0A4Y7QLR9_9AGAM (Uncharacterized protein n=1 Tax=Rickenella mellea TaxID=50990 RepID=A0A4Y7QLR9_9AGAM)

HSP 1 Score: 55.1 bits (131), Expect = 7.280e-7
Identity = 37/100 (37.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:   58 YVRSLEERPLRTKAATSAVLLALQECIVQ--------------------VIRKRPDLLRTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLL 297
            Y+  L   PLRTKAATS VLL +QE +                      + R + D  + LK+ALYG L+S P+GHVL   +  A +G  G    +AQ+L
Sbjct:   15 YLVQLSAHPLRTKAATSGVLLFIQEVLASHLAGVPSPRPPKDAPAVSHVLARAKVDA-KALKMALYGILISAPLGHVLVGRLQKAFAGKTGTGAKVAQIL 113          
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Match: M5FZ89_DACPD (Uncharacterized protein (Fragment) n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5FZ89_DACPD)

HSP 1 Score: 54.3 bits (129), Expect = 1.070e-6
Identity = 40/105 (38.10%), Postives = 51/105 (48.57%), Query Frame = 1
Query:   55 SYVRSLEERPLRTKAATSAVLLALQECIVQ-------------VIRKRPDLL----------RTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLL 300
            +Y+R+L +RPL TK  T AVL  LQE +               V R  P+L           R LKLALYG L+S PMGH L   I  A +G+ G    + QL +
Sbjct:    3 AYLRALAKRPLLTKMVTGAVLSFLQEPLSSSLAHLPSPAPSQTVSRYSPELALLLARLHVSPRALKLALYGFLISAPMGHFLVLMITRAFTGVQGVKARVGQLAM 107          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99753.22928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2HK19_9FUNG2.290e-1038.94Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A4P9YAQ4_9FUNG4.840e-1041.38Uncharacterized protein n=1 Tax=Piptocephalis cyli... [more]
A0A0W0FGI5_9AGAR7.090e-840.20Uncharacterized protein n=2 Tax=Moniliophthora ror... [more]
A0A167P0Q6_CALVF1.550e-740.95Uncharacterized protein n=2 Tax=Calocera TaxID=298... [more]
A0A2T6ZME6_TUBBO2.370e-737.93Uncharacterized protein n=1 Tax=Tuber borchii TaxI... [more]
A0A5J5FBV7_9PEZI2.970e-739.08Uncharacterized protein n=1 Tax=Sphaerosporella br... [more]
A0A8H5HLR5_9AGAR4.920e-737.37Uncharacterized protein n=1 Tax=Gymnopus confluens... [more]
D5GLC4_TUBMM5.940e-737.93Uncharacterized protein n=3 Tax=Tuberaceae TaxID=4... [more]
A0A4Y7QLR9_9AGAM7.280e-737.00Uncharacterized protein n=1 Tax=Rickenella mellea ... [more]
M5FZ89_DACPD1.070e-638.10Uncharacterized protein (Fragment) n=1 Tax=Dacryop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99753contigM-pyrifera_M_contig99753:382..684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size303
Cds size291
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.4143429-UTR-M-pyrifera_M_contig99753:381..3931622816914.4143429-UTR-M-pyrifera_M_contig99753:381..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99753 382..393 +
1692278252.6630764-UTR-M-pyrifera_M_contig99753:381..3931692278252.6630764-UTR-M-pyrifera_M_contig99753:381..393Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99753 382..393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816914.4252524-CDS-M-pyrifera_M_contig99753:393..6841622816914.4252524-CDS-M-pyrifera_M_contig99753:393..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99753 394..684 +
1692278252.6736143-CDS-M-pyrifera_M_contig99753:393..6841692278252.6736143-CDS-M-pyrifera_M_contig99753:393..684Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99753 394..684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99753.22928.1prot_M-pyrifera_M_contig99753.22928.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99753 394..684 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99753.22928.1

>prot_M-pyrifera_M_contig99753.22928.1 ID=prot_M-pyrifera_M_contig99753.22928.1|Name=mRNA_M-pyrifera_M_contig99753.22928.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
MALSRPVLPLRLWGSYVRSLEERPLRTKAATSAVLLALQECIVQVIRKRP
DLLRTLKLALYGCLVSGPMGHVLYSSIASATSGLPGALNGIAQLLLV
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mRNA from alignment at M-pyrifera_M_contig99753:382..684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99753.22928.1 ID=mRNA_M-pyrifera_M_contig99753.22928.1|Name=mRNA_M-pyrifera_M_contig99753.22928.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig99753:382..684+ (Macrocystis pyrifera P11B4 male)
TCCACGCACAGAATGGCGCTCAGTAGACCAGTACTGCCGTTGAGGTTGTG GGGCTCATATGTACGCTCACTAGAGGAGCGCCCGCTGCGCACCAAAGCAG CCACGTCGGCGGTGCTGCTCGCGCTGCAGGAGTGCATCGTGCAAGTCATC AGGAAGCGGCCAGACTTGCTCCGCACGCTCAAGCTTGCGCTGTATGGATG CTTGGTGAGCGGGCCCATGGGTCATGTGCTGTACTCCAGCATTGCAAGCG CGACATCTGGCCTGCCAGGCGCGCTGAACGGCATTGCGCAGCTGCTGCTC GTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99753:382..684+

>mRNA_M-pyrifera_M_contig99753.22928.1 ID=mRNA_M-pyrifera_M_contig99753.22928.1|Name=mRNA_M-pyrifera_M_contig99753.22928.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig99753:382..684+ (Macrocystis pyrifera P11B4 male)
ATGGCGCTCAGTAGACCAGTACTGCCGTTGAGGTTGTGGGGCTCATATGT
ACGCTCACTAGAGGAGCGCCCGCTGCGCACCAAAGCAGCCACGTCGGCGG
TGCTGCTCGCGCTGCAGGAGTGCATCGTGCAAGTCATCAGGAAGCGGCCA
GACTTGCTCCGCACGCTCAAGCTTGCGCTGTATGGATGCTTGGTGAGCGG
GCCCATGGGTCATGTGCTGTACTCCAGCATTGCAAGCGCGACATCTGGCC
TGCCAGGCGCGCTGAACGGCATTGCGCAGCTGCTGCTCGTCATGGCGCTC
AGTAGACCAGTACTGCCGTTGAGGTTGTGGGGCTCATATGTACGCTCACT
AGAGGAGCGCCCGCTGCGCACCAAAGCAGCCACGTCGGCGGTGCTGCTCG
CGCTGCAGGAGTGCATCGTGCAAGTCATCAGGAAGCGGCCAGACTTGCTC
CGCACGCTCAAGCTTGCGCTGTATGGATGCTTGGTGAGCGGGCCCATGGG
TCATGTGCTGTACTCCAGCATTGCAAGCGCGACATCTGGCCTGCCAGGCG
CGCTGAACGGCATTGCGCAGCTGCTGCTCGTC
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