mRNA_M-pyrifera_M_contig99663.22907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99663.22907.1
Unique NamemRNA_M-pyrifera_M_contig99663.22907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A803P665_CANSA (Elongation factor Ts, mitochondrial n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803P665_CANSA)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-9
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381
            G  TV+ AI+++     E I L++A  + A   G V  YLH     G+G+ A VV+LE +D  +  E L+++ +++A+H+VA+ P  L +E      H   DAL  +  I+ S   AE+  K+  +++  V
Sbjct:  212 GETTVQNAITEVAAMMGENIKLRRAFVISASSQGVVSTYLHTSPQPGLGRIAGVVSLEVEDGNSQSEALQRVGSELAMHVVAAKPLFLTRE------HVTSDALENEREILKSQ--AESSGKSQMAIEKMV 334          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A803P660_CANSA (Elongation factor Ts, mitochondrial n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A803P660_CANSA)

HSP 1 Score: 64.7 bits (156), Expect = 1.590e-9
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381
            G  TV+ AI+++     E I L++A  + A   G V  YLH     G+G+ A VV+LE +D  +  E L+++ +++A+H+VA+ P  L +E      H   DAL  +  I+ S   AE+  K+  +++  V
Sbjct:  212 GETTVQNAITEVAAMMGENIKLRRAFVISASSQGVVSTYLHTSPQPGLGRIAGVVSLEVEDGNSQSEALQRVGSELAMHVVAAKPLFLTRE------HVTSDALENEREILKSQ--AESSGKSQMAIEKMV 334          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A7J6F038_CANSA (Elongation factor Ts, mitochondrial n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6F038_CANSA)

HSP 1 Score: 63.2 bits (152), Expect = 6.140e-9
Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDS 327
            G  TV+ AI+++     E I L++A  + A   G V  YLH     G+G+ A VV+LE +D  +  E L+++ +++A+H+VA+ P  L +E      H   DAL  +  I+ S
Sbjct:  385 GETTVQNAITEVAAMMGENIKLRRAFVISASSQGVVSTYLHTSPQPGLGRIAGVVSLEVEDGNSQSEALQRVGSELAMHVVAAKPLFLTRE------HVTSDALENEREILKS 491          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: UPI0009010304 (elongation factor Ts, mitochondrial n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009010304)

HSP 1 Score: 62.8 bits (151), Expect = 7.110e-9
Identity = 37/132 (28.03%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    1 DGSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381
            +G  TV+ AI+++     E + L++  A+     G +  YLH     GIG+ A +++LE +D+   ++ ++++ +++A+H+VA+ P  L KED+      + DAL  +  I+ S   AE+ +K+  +++  V
Sbjct:  205 NGEKTVQNAITELAAMMGENVKLRRGFAIANPSQGVMSTYLHTSPQQGIGRIAGILSLEVEDANTPLDAVQRIGSELAMHVVAAKPLFLTKEDV------SSDALDNEREILKSQ--AESTAKSAMAIEKMV 328          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A118K102_CYNCS (Elongation factor Ts, mitochondrial n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K102_CYNCS)

HSP 1 Score: 61.6 bits (148), Expect = 1.770e-8
Identity = 30/92 (32.61%), Postives = 58/92 (63.04%), Query Frame = 1
Query:    1 DGSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKE 261
            +G  TVE AI+++     E I L++  A+   + G +  YLH     G+G+ A +++LE +D  A+++ ++++ +++A+H+VA+ P VL KE
Sbjct:  189 NGERTVENAITEVAAMMGENIKLRRGFAMSMSKHGVMSTYLHTCPQPGLGRIAGILSLEVEDENASLDAVQRVGSELAMHVVAAKPLVLTKE 280          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A4D8YQU4_SALSN (Elongation factor Ts, mitochondrial n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YQU4_SALSN)

HSP 1 Score: 61.6 bits (148), Expect = 1.780e-8
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDI 267
            G  TV+ AI+++   T E + L    A+ A   G +  YLH     GIG+ A +++LE +D  A ++ ++++ + IA+H+VA+ P  L+KED+
Sbjct:  192 GEKTVQNAITEVAVMTGENVKLGGGFAISAPSYGVISTYLHTSPMPGIGRIAGLLSLEVEDKDAPLDAVQRVGSQIAMHLVAAKPLFLSKEDV 284          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: S8EF22_9LAMI (Elongation factor Ts (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EF22_9LAMI)

HSP 1 Score: 61.2 bits (147), Expect = 2.150e-8
Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381
            G  T++ AI+++     E + L    A+ A   G +  YLH     G+G+ A VV+L+ +DS+A ++ +  + + +A+H+VA+ P  LAKED+        DAL  +E I+   S AE+  K+  ++   V
Sbjct:  145 GEKTLQNAIAEVAAMMGENVKLGGGFAISAPSHGVLSTYLHASPQPGLGRIAGVVSLDVEDSSAPLDSVRTVGSQLAMHVVAAKPLFLAKEDV------NSDALGNEEEIL--RSQAESTGKSETAIDKIV 267          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A5J5A1H0_9ASTE (Elongation factor Ts, mitochondrial n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5A1H0_9ASTE)

HSP 1 Score: 60.8 bits (146), Expect = 3.050e-8
Identity = 32/103 (31.07%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKE----DIVEGEHK 285
            G  TV+ AI+++     E + L++  A+ +   G +  YLH     G+G+ A +++LE +D  A+++ L+++ +++A+H+VA+ P  L KE    D VE E +
Sbjct:  145 GEKTVQNAITEVAAMMGENVKLRRGFAMSSSSQGIISTYLHTRPQRGLGRIAGILSLEVEDGNASLDALQRVGSELAMHVVAAKPLFLTKELVSSDAVENERE 247          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: Q9SWW0_SOLLC (Elongation factor Ts, mitochondrial n=8 Tax=Solanoideae TaxID=424551 RepID=Q9SWW0_SOLLC)

HSP 1 Score: 60.8 bits (146), Expect = 3.330e-8
Identity = 38/131 (29.01%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381
            G  +V+ AI+++     E + L++  A+ A   G +  YLH     G+G+ A +++LE +D   + + L+++ +++A+H+VA+ P  L KED+      + DAL  +  I+ S   AE+  K   +V+  V
Sbjct:  198 GEKSVQNAITEVAAMMGENVKLRRGFAMSAPSLGVISTYLHTSPQPGVGRIAGILSLEVEDKNVSEDALQRVGSELAMHVVAAKPLFLTKEDV------SSDALSNEREILKSQ--AESSGKPQIAVEKMV 320          
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A1R3G777_COCAP (Elongation factor Ts, mitochondrial n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3G777_COCAP)

HSP 1 Score: 60.5 bits (145), Expect = 4.550e-8
Identity = 38/131 (29.01%), Postives = 70/131 (53.44%), Query Frame = 1
Query:    4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381
            G  TV+ A++++     E + L +   +     G V  YLH     G+G+ A +++LE ++  +N++ L+K+ +++A+HIVAS P  L KE +        DAL  +  I+ S   AE+  K+  +++  V
Sbjct:  199 GETTVQNAVTEVAAMMGENVKLSRGFVMSPSSNGVVSSYLHRSPKPGLGRMAGILSLEVENGISNLDALQKVGSELAMHIVASKPLFLTKELVTS------DALNNEREILKSQ--AESTGKSPMAIEKMV 321          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A803P665_CANSA1.410e-932.06Elongation factor Ts, mitochondrial n=1 Tax=Cannab... [more]
A0A803P660_CANSA1.590e-932.06Elongation factor Ts, mitochondrial n=5 Tax=Cannab... [more]
A0A7J6F038_CANSA6.140e-933.63Elongation factor Ts, mitochondrial n=2 Tax=Cannab... [more]
UPI00090103047.110e-928.03elongation factor Ts, mitochondrial n=2 Tax=Ipomoe... [more]
A0A118K102_CYNCS1.770e-832.61Elongation factor Ts, mitochondrial n=1 Tax=Cynara... [more]
A0A4D8YQU4_SALSN1.780e-834.41Elongation factor Ts, mitochondrial n=2 Tax=Salvia... [more]
S8EF22_9LAMI2.150e-831.30Elongation factor Ts (Fragment) n=1 Tax=Genlisea a... [more]
A0A5J5A1H0_9ASTE3.050e-831.07Elongation factor Ts, mitochondrial n=2 Tax=Nyssac... [more]
Q9SWW0_SOLLC3.330e-829.01Elongation factor Ts, mitochondrial n=8 Tax=Solano... [more]
A0A1R3G777_COCAP4.550e-829.01Elongation factor Ts, mitochondrial n=2 Tax=Corcho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99663contigM-pyrifera_M_contig99663:214..615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.9
Seed ortholog evalue6.4e-08
Seed eggNOG ortholog4081.Solyc12g011270.1.1
Preferred nameEFTS
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031974,GO:0032543,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0071704,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
EggNOG OGs37N65@33090,3GB8V@35493,44HC7@71274,COG0264@1,KOG1071@2759
COG Functional cat.J
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816913.517535-CDS-M-pyrifera_M_contig99663:213..6151622816913.517535-CDS-M-pyrifera_M_contig99663:213..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99663 214..615 -
1692278252.1946774-CDS-M-pyrifera_M_contig99663:213..6151692278252.1946774-CDS-M-pyrifera_M_contig99663:213..615Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99663 214..615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99663.22907.1prot_M-pyrifera_M_contig99663.22907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99663 214..615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99663.22907.1

>prot_M-pyrifera_M_contig99663.22907.1 ID=prot_M-pyrifera_M_contig99663.22907.1|Name=mRNA_M-pyrifera_M_contig99663.22907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
DGSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLHGIGKQAAV
VALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDAL
LEQEFIMDSGSVAEAVSKAGASVKSFVHALQGQ*
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mRNA from alignment at M-pyrifera_M_contig99663:214..615-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99663.22907.1 ID=mRNA_M-pyrifera_M_contig99663.22907.1|Name=mRNA_M-pyrifera_M_contig99663.22907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig99663:214..615- (Macrocystis pyrifera P11B4 male)
GATGGCAGTGGTACTGTAGAGGAGGCCATCTCGAAGATGATCTTCTCGAC CAAGGAAACGATCTCTCTCAAGAAGGCCCTTGCAGTCCAGGCCAAGGAGG GCGGGGCTGTGGGCGTCTACCTCCATGGCATCGGCAAGCAGGCAGCTGTG GTAGCCCTCGAGGCAAAGGACAGCACTGCCAACGTCGAGCAACTCGAGAA ACTCGCGACTGACATCGCCATTCACATCGTCGCTTCCTCCCCCAAGGTCC TTGCTAAGGAGGACATTGTCGAGGGCGAGCACAAGGCTGACGACGCACTC CTCGAGCAGGAGTTCATCATGGACTCTGGCTCTGTTGCTGAGGCCGTCTC GAAGGCAGGCGCCTCGGTGAAGAGCTTCGTCCATGCGCTGCAGGGACAGT GA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99663:214..615-

>mRNA_M-pyrifera_M_contig99663.22907.1 ID=mRNA_M-pyrifera_M_contig99663.22907.1|Name=mRNA_M-pyrifera_M_contig99663.22907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig99663:214..615- (Macrocystis pyrifera P11B4 male)
GATGGCAGTGGTACTGTAGAGGAGGCCATCTCGAAGATGATCTTCTCGAC
CAAGGAAACGATCTCTCTCAAGAAGGCCCTTGCAGTCCAGGCCAAGGAGG
GCGGGGCTGTGGGCGTCTACCTCCATGGCATCGGCAAGCAGGCAGCTGTG
GTAGCCCTCGAGGCAAAGGACAGCACTGCCAACGTCGAGCAACTCGAGAA
ACTCGCGACTGACATCGCCATTCACATCGTCGCTTCCTCCCCCAAGGTCC
TTGCTAAGGAGGACATTGTCGAGGGCGAGCACAAGGCTGACGACGCACTC
CTCGAGCAGGAGTTCATCATGGACTCTGGCTCTGTTGCTGAGGCCGTCTC
GAAGGCAGGCGCCTCGGTGAAGAGCTTCGTCCATGCGCTGCAGGGACAGT
GAGATGGCAGTGGTACTGTAGAGGAGGCCATCTCGAAGATGATCTTCTCG
ACCAAGGAAACGATCTCTCTCAAGAAGGCCCTTGCAGTCCAGGCCAAGGA
GGGCGGGGCTGTGGGCGTCTACCTCCATGGCATCGGCAAGCAGGCAGCTG
TGGTAGCCCTCGAGGCAAAGGACAGCACTGCCAACGTCGAGCAACTCGAG
AAACTCGCGACTGACATCGCCATTCACATCGTCGCTTCCTCCCCCAAGGT
CCTTGCTAAGGAGGACATTGTCGAGGGCGAGCACAAGGCTGACGACGCAC
TCCTCGAGCAGGAGTTCATCATGGACTCTGGCTCTGTTGCTGAGGCCGTC
TCGAAGGCAGGCGCCTCGGTGAAGAGCTTCGTCCATGCGCTGCAGGGACA
GTGA
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