mRNA_M-pyrifera_M_contig99663.22907.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A803P665_CANSA (Elongation factor Ts, mitochondrial n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803P665_CANSA) HSP 1 Score: 64.7 bits (156), Expect = 1.410e-9 Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381 G TV+ AI+++ E I L++A + A G V YLH G+G+ A VV+LE +D + E L+++ +++A+H+VA+ P L +E H DAL + I+ S AE+ K+ +++ V Sbjct: 212 GETTVQNAITEVAAMMGENIKLRRAFVISASSQGVVSTYLHTSPQPGLGRIAGVVSLEVEDGNSQSEALQRVGSELAMHVVAAKPLFLTRE------HVTSDALENEREILKSQ--AESSGKSQMAIEKMV 334
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A803P660_CANSA (Elongation factor Ts, mitochondrial n=5 Tax=Cannabis sativa TaxID=3483 RepID=A0A803P660_CANSA) HSP 1 Score: 64.7 bits (156), Expect = 1.590e-9 Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381 G TV+ AI+++ E I L++A + A G V YLH G+G+ A VV+LE +D + E L+++ +++A+H+VA+ P L +E H DAL + I+ S AE+ K+ +++ V Sbjct: 212 GETTVQNAITEVAAMMGENIKLRRAFVISASSQGVVSTYLHTSPQPGLGRIAGVVSLEVEDGNSQSEALQRVGSELAMHVVAAKPLFLTRE------HVTSDALENEREILKSQ--AESSGKSQMAIEKMV 334
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A7J6F038_CANSA (Elongation factor Ts, mitochondrial n=2 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6F038_CANSA) HSP 1 Score: 63.2 bits (152), Expect = 6.140e-9 Identity = 38/113 (33.63%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDS 327 G TV+ AI+++ E I L++A + A G V YLH G+G+ A VV+LE +D + E L+++ +++A+H+VA+ P L +E H DAL + I+ S Sbjct: 385 GETTVQNAITEVAAMMGENIKLRRAFVISASSQGVVSTYLHTSPQPGLGRIAGVVSLEVEDGNSQSEALQRVGSELAMHVVAAKPLFLTRE------HVTSDALENEREILKS 491
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: UPI0009010304 (elongation factor Ts, mitochondrial n=2 Tax=Ipomoea TaxID=4119 RepID=UPI0009010304) HSP 1 Score: 62.8 bits (151), Expect = 7.110e-9 Identity = 37/132 (28.03%), Postives = 75/132 (56.82%), Query Frame = 1 Query: 1 DGSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381 +G TV+ AI+++ E + L++ A+ G + YLH GIG+ A +++LE +D+ ++ ++++ +++A+H+VA+ P L KED+ + DAL + I+ S AE+ +K+ +++ V Sbjct: 205 NGEKTVQNAITELAAMMGENVKLRRGFAIANPSQGVMSTYLHTSPQQGIGRIAGILSLEVEDANTPLDAVQRIGSELAMHVVAAKPLFLTKEDV------SSDALDNEREILKSQ--AESTAKSAMAIEKMV 328
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A118K102_CYNCS (Elongation factor Ts, mitochondrial n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A118K102_CYNCS) HSP 1 Score: 61.6 bits (148), Expect = 1.770e-8 Identity = 30/92 (32.61%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 1 DGSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKE 261 +G TVE AI+++ E I L++ A+ + G + YLH G+G+ A +++LE +D A+++ ++++ +++A+H+VA+ P VL KE Sbjct: 189 NGERTVENAITEVAAMMGENIKLRRGFAMSMSKHGVMSTYLHTCPQPGLGRIAGILSLEVEDENASLDAVQRVGSELAMHVVAAKPLVLTKE 280
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A4D8YQU4_SALSN (Elongation factor Ts, mitochondrial n=2 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YQU4_SALSN) HSP 1 Score: 61.6 bits (148), Expect = 1.780e-8 Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDI 267 G TV+ AI+++ T E + L A+ A G + YLH GIG+ A +++LE +D A ++ ++++ + IA+H+VA+ P L+KED+ Sbjct: 192 GEKTVQNAITEVAVMTGENVKLGGGFAISAPSYGVISTYLHTSPMPGIGRIAGLLSLEVEDKDAPLDAVQRVGSQIAMHLVAAKPLFLSKEDV 284
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: S8EF22_9LAMI (Elongation factor Ts (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8EF22_9LAMI) HSP 1 Score: 61.2 bits (147), Expect = 2.150e-8 Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381 G T++ AI+++ E + L A+ A G + YLH G+G+ A VV+L+ +DS+A ++ + + + +A+H+VA+ P LAKED+ DAL +E I+ S AE+ K+ ++ V Sbjct: 145 GEKTLQNAIAEVAAMMGENVKLGGGFAISAPSHGVLSTYLHASPQPGLGRIAGVVSLDVEDSSAPLDSVRTVGSQLAMHVVAAKPLFLAKEDV------NSDALGNEEEIL--RSQAESTGKSETAIDKIV 267
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A5J5A1H0_9ASTE (Elongation factor Ts, mitochondrial n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J5A1H0_9ASTE) HSP 1 Score: 60.8 bits (146), Expect = 3.050e-8 Identity = 32/103 (31.07%), Postives = 61/103 (59.22%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKE----DIVEGEHK 285 G TV+ AI+++ E + L++ A+ + G + YLH G+G+ A +++LE +D A+++ L+++ +++A+H+VA+ P L KE D VE E + Sbjct: 145 GEKTVQNAITEVAAMMGENVKLRRGFAMSSSSQGIISTYLHTRPQRGLGRIAGILSLEVEDGNASLDALQRVGSELAMHVVAAKPLFLTKELVSSDAVENERE 247
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: Q9SWW0_SOLLC (Elongation factor Ts, mitochondrial n=8 Tax=Solanoideae TaxID=424551 RepID=Q9SWW0_SOLLC) HSP 1 Score: 60.8 bits (146), Expect = 3.330e-8 Identity = 38/131 (29.01%), Postives = 72/131 (54.96%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381 G +V+ AI+++ E + L++ A+ A G + YLH G+G+ A +++LE +D + + L+++ +++A+H+VA+ P L KED+ + DAL + I+ S AE+ K +V+ V Sbjct: 198 GEKSVQNAITEVAAMMGENVKLRRGFAMSAPSLGVISTYLHTSPQPGVGRIAGILSLEVEDKNVSEDALQRVGSELAMHVVAAKPLFLTKEDV------SSDALSNEREILKSQ--AESSGKPQIAVEKMV 320
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Match: A0A1R3G777_COCAP (Elongation factor Ts, mitochondrial n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3G777_COCAP) HSP 1 Score: 60.5 bits (145), Expect = 4.550e-8 Identity = 38/131 (29.01%), Postives = 70/131 (53.44%), Query Frame = 1 Query: 4 GSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLH-----GIGKQAAVVALEAKDSTANVEQLEKLATDIAIHIVASSPKVLAKEDIVEGEHKADDALLEQEFIMDSGSVAEAVSKAGASVKSFV 381 G TV+ A++++ E + L + + G V YLH G+G+ A +++LE ++ +N++ L+K+ +++A+HIVAS P L KE + DAL + I+ S AE+ K+ +++ V Sbjct: 199 GETTVQNAVTEVAAMMGENVKLSRGFVMSPSSNGVVSSYLHRSPKPGLGRMAGILSLEVENGISNLDALQKVGSELAMHIVASKPLFLTKELVTS------DALNNEREILKSQ--AESTGKSPMAIEKMV 321 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99663.22907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig99663.22907.1 >prot_M-pyrifera_M_contig99663.22907.1 ID=prot_M-pyrifera_M_contig99663.22907.1|Name=mRNA_M-pyrifera_M_contig99663.22907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp DGSGTVEEAISKMIFSTKETISLKKALAVQAKEGGAVGVYLHGIGKQAAVback to top mRNA from alignment at M-pyrifera_M_contig99663:214..615- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig99663.22907.1 ID=mRNA_M-pyrifera_M_contig99663.22907.1|Name=mRNA_M-pyrifera_M_contig99663.22907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig99663:214..615- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig99663:214..615- >mRNA_M-pyrifera_M_contig99663.22907.1 ID=mRNA_M-pyrifera_M_contig99663.22907.1|Name=mRNA_M-pyrifera_M_contig99663.22907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig99663:214..615- (Macrocystis pyrifera P11B4 male)back to top |