mRNA_M-pyrifera_M_contig99471.22884.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99471.22884.1
Unique NamemRNA_M-pyrifera_M_contig99471.22884.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99471.22884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99471contigM-pyrifera_M_contig99471:31..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99471.22884.1prot_M-pyrifera_M_contig99471.22884.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99471 31..315 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.361421-CDS-M-pyrifera_M_contig99471:30..1811622816912.361421-CDS-M-pyrifera_M_contig99471:30..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99471 31..181 -
1692278251.502056-CDS-M-pyrifera_M_contig99471:30..1811692278251.502056-CDS-M-pyrifera_M_contig99471:30..181Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99471 31..181 -
1622816912.3732882-CDS-M-pyrifera_M_contig99471:220..3151622816912.3732882-CDS-M-pyrifera_M_contig99471:220..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99471 221..315 -
1692278251.5116234-CDS-M-pyrifera_M_contig99471:220..3151692278251.5116234-CDS-M-pyrifera_M_contig99471:220..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99471 221..315 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816912.3848965-UTR-M-pyrifera_M_contig99471:315..3391622816912.3848965-UTR-M-pyrifera_M_contig99471:315..339Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99471 316..339 -
1692278251.5200896-UTR-M-pyrifera_M_contig99471:315..3391692278251.5200896-UTR-M-pyrifera_M_contig99471:315..339Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99471 316..339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99471.22884.1

>prot_M-pyrifera_M_contig99471.22884.1 ID=prot_M-pyrifera_M_contig99471.22884.1|Name=mRNA_M-pyrifera_M_contig99471.22884.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MVNVSSGNEGGAMHAMLFRHEKPCIPSCGSLPVSDSSFTNCSVVSDTGRG
GTFSIRSGILNMTKTRITNSMAGFTGGAIYSS
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mRNA from alignment at M-pyrifera_M_contig99471:31..339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99471.22884.1 ID=mRNA_M-pyrifera_M_contig99471.22884.1|Name=mRNA_M-pyrifera_M_contig99471.22884.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig99471:31..339- (Macrocystis pyrifera P11B4 male)
ACTGTGGCCGTGTCAGGGTGCGCAATGGTGAACGTGTCGTCTGGGAATGA
AGGTGGTGCCATGCACGCCATGTTGTTCAGACACGAGAAGCCGTGCATAC
CTTCTTGTGGTTCCCTTCCGTCTTGTCTACCGCGTTGGTCACAGTCAGCG
ACAATCAGCGTGTCCGATTCCTCCTTCACAAACTGTTCTGTGGTTTCAGA
CACAGGCCGTGGCGGAACGTTCTCTATCCGAAGTGGGATCTTGAACATGA
CCAAGACACGAATTACCAACTCCATGGCCGGTTTTACTGGTGGCGCCATC
TACAGCTCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99471:31..339-

>mRNA_M-pyrifera_M_contig99471.22884.1 ID=mRNA_M-pyrifera_M_contig99471.22884.1|Name=mRNA_M-pyrifera_M_contig99471.22884.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig99471:31..339- (Macrocystis pyrifera P11B4 male)
ATGGTGAACGTGTCGTCTGGGAATGAAGGTGGTGCCATGCACGCCATGTT
GTTCAGACACGAGAAGCCGTGCATACCTTCTTGTGGTTCCCTTCCATGGT
GAACGTGTCGTCTGGGAATGAAGGTGGTGCCATGCACGCCATGTTGTTCA
GACACGAGAAGCCGTGCATACCTTCTTGTGGTTCCCTTCCCGTGTCCGAT
TCCTCCTTCACAAACTGTTCTGTGGTTTCAGACACAGGCCGTGGCGGAAC
GTTCTCTATCCGAAGTGGGATCTTGAACATGACCAAGACACGAATTACCA
ACTCCATGGCCGGTTTTACTGGTGGCGCCATCTACAGCTCACGTGTCCGA
TTCCTCCTTCACAAACTGTTCTGTGGTTTCAGACACAGGCCGTGGCGGAA
CGTTCTCTATCCGAAGTGGGATCTTGAACATGACCAAGACACGAATTACC
AACTCCATGGCCGGTTTTACTGGTGGCGCCATCTACAGCTCA
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