mRNA_M-pyrifera_M_contig99197.22826.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99197.22826.1
Unique NamemRNA_M-pyrifera_M_contig99197.22826.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A554VRS6_9FLAO (Uncharacterized protein n=2 Tax=Aquimarina TaxID=290174 RepID=A0A554VRS6_9FLAO)

HSP 1 Score: 58.5 bits (140), Expect = 2.920e-9
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            MN+ N  +  YKKQLEKGD+   YKGL+E++  LK   KN  P + +SG+IH+
Sbjct:    1 MNSFNNYVTEYKKQLEKGDIKKAYKGLIEYMMSLKTYFKNKYPDYFVSGNIHH 53          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: UPI000836641C (hypothetical protein n=1 Tax=Abyssisolibacter fermentans TaxID=1766203 RepID=UPI000836641C)

HSP 1 Score: 58.2 bits (139), Expect = 4.040e-9
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            M +LN+ I  YKKQ+E GD+   YKGLM+FI DL+  +KN +P + +SG I++
Sbjct:    1 MESLNKYINEYKKQIENGDIKKAYKGLMDFIMDLRIHLKNRHPDYIVSGSIYH 53          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A7J4IFS1_9ARCH (Uncharacterized protein n=2 Tax=Thermoplasmata archaeon TaxID=1906666 RepID=A0A7J4IFS1_9ARCH)

HSP 1 Score: 52.0 bits (123), Expect = 9.600e-7
Identity = 22/46 (47.83%), Postives = 32/46 (69.57%), Query Frame = 1
Query:   25 IQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            I  Y+KQ+ KGD+   YKGLME+I +L+   KN  P + +SG+I+Y
Sbjct:    8 INEYRKQIAKGDIKEAYKGLMEYIMNLRTYFKNKYPDYFVSGNIYY 53          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A1G2YVE5_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=A0A1G2YVE5_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 1.030e-6
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = 1
Query:    1 SMNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            +M + ++ I  Y++QLEKG +   Y+GLME+I DL+  +KN  P + +SG I+Y
Sbjct:    5 NMESFHEYIIEYREQLEKGAIKKAYRGLMEYIMDLRTHLKNKYPDYFVSGSIYY 58          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A2I0PLK5_9EURY (Uncharacterized protein n=1 Tax=Methanobacteriales archaeon HGW-Methanobacteriales-1 TaxID=2013815 RepID=A0A2I0PLK5_9EURY)

HSP 1 Score: 51.6 bits (122), Expect = 1.330e-6
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSG 150
            M +L + +  Y+KQLEKG +   Y+GLM +I DL+N +KN  P +++SG
Sbjct:    1 MESLREQMFEYRKQLEKGHIQGAYRGLMSYIMDLRNYLKNKYPEYSVSG 49          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A151E1N0_9ARCH (Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon SG8-52-2 TaxID=1803817 RepID=A0A151E1N0_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.350e-6
Identity = 21/53 (39.62%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            MN+ ++ +  YK+Q++KG +S  Y+GLM++I DL+  +K   P + +SG I+Y
Sbjct:    1 MNSFHEKMNEYKEQMKKGVISEAYRGLMDYIMDLRTYLKKKYPNYIVSGSIYY 53          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A0S7B693_9CHLR (Uncharacterized protein n=1 Tax=Longilinea arvoryzae TaxID=360412 RepID=A0A0S7B693_9CHLR)

HSP 1 Score: 50.4 bits (119), Expect = 3.960e-6
Identity = 21/53 (39.62%), Postives = 37/53 (69.81%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            M + ++++  Y+KQLEKG +S  YKGLME+I +L+   +N +P  ++ G I++
Sbjct:    1 MESFHESMNEYRKQLEKGVISKAYKGLMEYILELRTHFQNSHPDFSVPGSIYF 53          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: D1YX32_METPS (Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) TaxID=304371 RepID=D1YX32_METPS)

HSP 1 Score: 50.4 bits (119), Expect = 4.010e-6
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 1
Query:   34 YKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            Y+KQ+ KGD+   Y+GLME+I DL++  +N  P + +SG+I+Y
Sbjct:   17 YRKQVAKGDIKEAYRGLMEYIMDLRSHFQNKYPDYFVSGNIYY 59          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A1F8QC94_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium RBG_16_54_18 TaxID=1797648 RepID=A0A1F8QC94_9CHLR)

HSP 1 Score: 49.3 bits (116), Expect = 1.050e-5
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGHIHY 162
            M +  + I  Y+ QLEKG +   YKGLME+I DL+   +N  P + +SG I+Y
Sbjct:    1 MESFQEYINEYRTQLEKGAIQKAYKGLMEYIMDLRAYFRNKYPGYFVSGSIYY 53          
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Match: A0A150IM16_9EURY (Uncharacterized protein n=1 Tax=Candidatus Methanofastidiosum methylthiophilus TaxID=1705564 RepID=A0A150IM16_9EURY)

HSP 1 Score: 48.5 bits (114), Expect = 1.980e-5
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1
Query:    4 MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSG 150
            M + NQ +  Y+K+++KG +   YKGLME+I DL+   KN  P++ +SG
Sbjct:    1 MESFNQYMDYYRKEMKKGTVRNAYKGLMEYIMDLRTHFKNKYPSYFVSG 49          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99197.22826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A554VRS6_9FLAO2.920e-949.06Uncharacterized protein n=2 Tax=Aquimarina TaxID=2... [more]
UPI000836641C4.040e-949.06hypothetical protein n=1 Tax=Abyssisolibacter ferm... [more]
A0A7J4IFS1_9ARCH9.600e-747.83Uncharacterized protein n=2 Tax=Thermoplasmata arc... [more]
A0A1G2YVE5_9BACT1.030e-642.59Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
A0A2I0PLK5_9EURY1.330e-644.90Uncharacterized protein n=1 Tax=Methanobacteriales... [more]
A0A151E1N0_9ARCH1.350e-639.62Uncharacterized protein n=1 Tax=Thermoplasmatales ... [more]
A0A0S7B693_9CHLR3.960e-639.62Uncharacterized protein n=1 Tax=Longilinea arvoryz... [more]
D1YX32_METPS4.010e-646.51Uncharacterized protein n=1 Tax=Methanocella palud... [more]
A0A1F8QC94_9CHLR1.050e-543.40Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A150IM16_9EURY1.980e-542.86Uncharacterized protein n=1 Tax=Candidatus Methano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99197contigM-pyrifera_M_contig99197:530..691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.149229-UTR-M-pyrifera_M_contig99197:529..5321622816909.149229-UTR-M-pyrifera_M_contig99197:529..532Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99197 530..532 +
1692278249.518498-UTR-M-pyrifera_M_contig99197:529..5321692278249.518498-UTR-M-pyrifera_M_contig99197:529..532Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig99197 530..532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816909.1600182-CDS-M-pyrifera_M_contig99197:532..6911622816909.1600182-CDS-M-pyrifera_M_contig99197:532..691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99197 533..691 +
1692278249.5288684-CDS-M-pyrifera_M_contig99197:532..6911692278249.5288684-CDS-M-pyrifera_M_contig99197:532..691Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99197 533..691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99197.22826.1prot_M-pyrifera_M_contig99197.22826.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99197 533..691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99197.22826.1

>prot_M-pyrifera_M_contig99197.22826.1 ID=prot_M-pyrifera_M_contig99197.22826.1|Name=mRNA_M-pyrifera_M_contig99197.22826.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MNTLNQNIQAYKKQLEKGDLSAGYKGLMEFIGDLKNQIKNDNPTHAMSGH
IHY
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mRNA from alignment at M-pyrifera_M_contig99197:530..691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99197.22826.1 ID=mRNA_M-pyrifera_M_contig99197.22826.1|Name=mRNA_M-pyrifera_M_contig99197.22826.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig99197:530..691+ (Macrocystis pyrifera P11B4 male)
TCAATGAACACACTTAACCAAAATATCCAGGCTTACAAAAAGCAACTAGA AAAGGGAGACCTCAGCGCAGGGTACAAGGGCCTGATGGAGTTTATCGGTG ATTTGAAAAATCAAATCAAAAATGATAATCCTACCCATGCGATGTCCGGC CATATCCACTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99197:530..691+

>mRNA_M-pyrifera_M_contig99197.22826.1 ID=mRNA_M-pyrifera_M_contig99197.22826.1|Name=mRNA_M-pyrifera_M_contig99197.22826.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig99197:530..691+ (Macrocystis pyrifera P11B4 male)
ATGAACACACTTAACCAAAATATCCAGGCTTACAAAAAGCAACTAGAAAA
GGGAGACCTCAGCGCAGGGTACAAGGGCCTGATGGAGTTTATCGGTGATT
TGAAAAATCAAATCAAAAATGATAATCCTACCCATGCGATGTCCGGCCAT
ATCCACTACATGAACACACTTAACCAAAATATCCAGGCTTACAAAAAGCA
ACTAGAAAAGGGAGACCTCAGCGCAGGGTACAAGGGCCTGATGGAGTTTA
TCGGTGATTTGAAAAATCAAATCAAAAATGATAATCCTACCCATGCGATG
TCCGGCCATATCCACTAC
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