mRNA_M-pyrifera_M_contig9918.22817.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig9918.22817.1
Unique NamemRNA_M-pyrifera_M_contig9918.22817.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig9918.22817.1 vs. uniprot
Match: D7FPS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS2_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.190e-37
Identity = 131/338 (38.76%), Postives = 156/338 (46.15%), Query Frame = 1 
Query:    1 MGPDEYRAGSLPLHVMVTVLQFAVPEIMLPGEARLVCRGTASALGSPSFWRGMTIILDRDEG--DPXXXXXXXXXXXXXXELRFQHASGTDAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTRSSPXPMAVGGGAADG-----DTPGSLRGXXXXXXXXXXXXXXXXXXXXXXXXVAFRRLTPPIADTETVEMPVPIFPTCIDACGCMVAVGTREGPVILFDVGTARGHERAAASKGPRGGETGPLAASSNGVKTQSGFLPSEALRASEQKGSSDGTRGGSGGDGDGTTTTAISVYGSLADGAGPISAVLLDRAKVIAAGCGSRRSGGGYVIRCASV 993
            M P    +  LPLHV+VTVLQFAVPE++   EARL+C+G +S+L SPSFWRGMT+ L RDEG   P              ++            XXXXXX                        SSP     GGGA  G             XXXXXXXXXX              VAFRRLTPP+  TET++ PVP++PTC+DAC                          AAA++ P    T                 P+ AL  S  +  S              T +   VYGSLADG GP +AVLLDRAKVIAAG GSRRSGGG+VIR  +V
Sbjct:    1 MDPGPSPSSRLPLHVVVTVLQFAVPEVVSLSEARLLCKGASSSLASPSFWRGMTVNLTRDEGYEPPLNSPRRPQHDESSSKVSAXXXXXXXXXXXXXXXXRATATRPRSNVDCLLGGIGVAGLASSPPAGCHGGGAISGAGTRKXXXXXXXXXXXXXXXXXXATAGRQFLRRYHHHVAFRRLTPPVTSTETIDTPVPLYPTCLDAC--------------------------AAAARVPGKAAT-----------------PTTALNRSSNRSES--------------TASVTRVYGSLADGTGPTTAVLLDRAKVIAAGRGSRRSGGGFVIRIYAV 281
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BLAST of mRNA_M-pyrifera_M_contig9918.22817.1 vs. uniprot
Match: A0A6H5L1B7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 9.100e-30
Identity = 80/168 (47.62%), Postives = 101/168 (60.12%), Query Frame = 1 
Query:  508 VAFRRLTPPIADTETVEMPVPIFPTCIDACGCMVAVGTREGPVILFDVGTARGHERAAASKGPRGGETG------PLAASSNGVKTQSGFLPSEALRASEQKGSSDGTRGGSGGDGDGTTTTAISVYGSLADGAGPISAVLLDRAKVIAAGCGSRRSGGGYVIRCASV 993
            VAFRRLTPP+ +TET++ PVP++PTC+D CG MVA+GTREGPV+LF   T  G              +G      PLA  +N    +S   P  A    +    +    G S  +  G+T +    YGSLADG GP +AVL+DRAKVIAAG GSRRSGGG+VIR  +V
Sbjct:  122 VAFRRLTPPVTNTETIDTPVPLYPTCLDTCGNMVALGTREGPVLLFH--TTNGSXXXXXXXXXXXXXSGSYRDGAPLALETNAAAGRSAMTPPAARAPGKAATPTTALAGSS--NRSGSTASVTRAYGSLADGTGPTTAVLVDRAKVIAAGRGSRRSGGGFVIRIYAV 285
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig9918.22817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPS2_ECTSI3.190e-3738.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1B7_9PHAE9.100e-3047.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig9918contigM-pyrifera_M_contig9918:7786..10723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size993
Cds size993
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig9918.22817.1prot_M-pyrifera_M_contig9918.22817.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig9918 7786..10723 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816908.7545705-CDS-M-pyrifera_M_contig9918:7785..78771622816908.7545705-CDS-M-pyrifera_M_contig9918:7785..7877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 7786..7877 +
1692278249.3254154-CDS-M-pyrifera_M_contig9918:7785..78771692278249.3254154-CDS-M-pyrifera_M_contig9918:7785..7877Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 7786..7877 +
1622816908.7677763-CDS-M-pyrifera_M_contig9918:8399..86891622816908.7677763-CDS-M-pyrifera_M_contig9918:8399..8689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 8400..8689 +
1692278249.3339257-CDS-M-pyrifera_M_contig9918:8399..86891692278249.3339257-CDS-M-pyrifera_M_contig9918:8399..8689Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 8400..8689 +
1622816908.7794511-CDS-M-pyrifera_M_contig9918:9211..93541622816908.7794511-CDS-M-pyrifera_M_contig9918:9211..9354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 9212..9354 +
1692278249.351015-CDS-M-pyrifera_M_contig9918:9211..93541692278249.351015-CDS-M-pyrifera_M_contig9918:9211..9354Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 9212..9354 +
1622816908.7907546-CDS-M-pyrifera_M_contig9918:10063..102661622816908.7907546-CDS-M-pyrifera_M_contig9918:10063..10266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 10064..10266 +
1692278249.3602371-CDS-M-pyrifera_M_contig9918:10063..102661692278249.3602371-CDS-M-pyrifera_M_contig9918:10063..10266Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 10064..10266 +
1622816908.8036761-CDS-M-pyrifera_M_contig9918:10458..107231622816908.8036761-CDS-M-pyrifera_M_contig9918:10458..10723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 10459..10723 +
1692278249.3700507-CDS-M-pyrifera_M_contig9918:10458..107231692278249.3700507-CDS-M-pyrifera_M_contig9918:10458..10723Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig9918 10459..10723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig9918.22817.1

>prot_M-pyrifera_M_contig9918.22817.1 ID=prot_M-pyrifera_M_contig9918.22817.1|Name=mRNA_M-pyrifera_M_contig9918.22817.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=331bp
MGPDEYRAGSLPLHVMVTVLQFAVPEIMLPGEARLVCRGTASALGSPSFW
RGMTIILDRDEGDPEPKPKPKPEPEPKPELRFQHASGTDAPAKPEPHFQH
ASETNTPAKPEPLAQHASDTTRSSPPPMAVGGGAADGDTPGSLRGGTTVG
GGREEAECARRFLRRYHHHVAFRRLTPPIADTETVEMPVPIFPTCIDACG
CMVAVGTREGPVILFDVGTARGHERAAASKGPRGGETGPLAASSNGVKTQ
SGFLPSEALRASEQKGSSDGTRGGSGGDGDGTTTTAISVYGSLADGAGPI
SAVLLDRAKVIAAGCGSRRSGGGYVIRCASV
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mRNA from alignment at M-pyrifera_M_contig9918:7786..10723+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig9918.22817.1 ID=mRNA_M-pyrifera_M_contig9918.22817.1|Name=mRNA_M-pyrifera_M_contig9918.22817.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2938bp|location=Sequence derived from alignment at M-pyrifera_M_contig9918:7786..10723+ (Macrocystis pyrifera P11B4 male)
ATGGGGCCTGACGAGTATCGAGCTGGCAGCCTTCCTCTCCACGTCATGGT
TACCGTGCTGCAGTTTGCGGTCCCTGAAATCATGTTGCCGGGGTAAGTTG
CAATATGCAGGCGAGAGATGAGGTAAAAGTTCCGCGGTACCTACGGCAGT
ACATACCTCTGCTGTGCTGTACCAGGTGCCTGGTATGCATCTGCACATAC
GAATACAACATCCCATGATAACAGTAAATTTCACAACAAGCAGTACACAG
CAGTAGCAGAAGTGGTGACACGAAGGCAACGCAGATGCCCTCGAGCACCC
TCAAAACCATGCCACGTAGGATGGGCGGACGGAACCGAGAGCGAAAATAA
GGTGTTGCACTCTCGAAAGCGAAGTAAGGTGAGATTCCCAACGACGACAG
CCGCCCGCCCCCCCCTCTCTCCCCTCCCCTCCCCTCTCTCGCCTTGCTTA
TCCTCCCCTCACCCCTCCCTATAACGCCCCACGATCCACGATCCACGATT
CGTTTTTCTCTGCCAATATGGACTCGAACTGCTGTTGTCTCTTGATGTGG
ATGGTGACGATGACTTTTAGGTGGCTACTGACTGTCATCTGTATTCTCTC
CCGTTTGACACCAGCGAGGCCCGACTCGTCTGCAGGGGTACAGCCTCGGC
TCTCGGCTCCCCTTCCTTCTGGCGCGGCATGACCATCATCCTCGACCGAG
ATGAGGGAGACCCTGAACCCAAACCCAAACCCAAACCGGAGCCCGAGCCC
AAGCCCGAACTCCGCTTTCAACACGCCTCTGGAACGGATGCACCCGCCAA
GCCCGAACCCCACTTTCAACATGCCTCTGAAACAAATACACCCGCCAAAC
CCGAACCCCTGGCTCAACACGCCTCCGATACGACGAGAAGTTCCCCGCCG
CCCAGTGCAGCAACGGGAATGAGCGGCAGGAGCAACGCAGATAGCCTTCT
CCTCCTCGGTGATGGTGGCGACGGTAGCAGACCCAACGGCCCGGAGGCTC
CGCCAAGGAGAAATCATCGTGGTGAAAGCAGACCCGTCGGCCCGGAGCTT
CCACCAATGAGAGACCATAGCGGCGGTATCAGACCCATCGACCCGGCTAT
TCCACCAATGAGAGATCATCGCGGTATCAGACCCACCGGTCCGGACTTTC
CACCAATGAGATATCACCGCGATGGTAGCAGGCCGATCGTCCCGGACATC
CCTCCAACGAGAGATCATCGCGGCGGTAGCAGACCCATCGGTCTTGACCC
TCCGGACTGCAACGGTGGTGGTGGACGCGCCGCCCGTAGTGGAGCCGGCG
TTGATGTAAGCTGTAGGGGCGGTGGCGGCGGCAACGACGACGGCAGCCGT
GGTGGTGGTGGCGGCGTCGGTGGCGTCGGCAAGATGGGGGCGGGGGCGGG
AGCGGGGGCGGGGAAGAGGATTCGAGTGGCTGTCGGGGGCGGTGCCGCCG
ACGGTGACACCCCGGGAAGTTTGAGAGGAGGGACGACGGTGGGGGGTGGG
CGAGAGGAGGCGGAGTGTGCGAGGCGGTTCCTTCGGCGGTACCACCACCA
CGTCGCGTTTCGGCGGCTGGTGAGAGTTTGAAGGGCGCTCATTTCAACAG
TTAACGTTTAATCCTCTTTAGGGCTTCAGAGGGGGGAAAGTAATCACAAC
ATTCGACGACTACAGTAGCATCAGCCACATCATAGCGCACCCGGGCTGCT
GGGTAACGGCACAATACATGTGTTACCCGTATTGCCACAAGTACTGGTGC
GCACAATACATTGGAGTTTTGATACAACATGTGCGCAGCATTTGTTGGTG
TCAATGATGATGCTGCGCGGTCGCACTTAACTGGTGGTAAGGCCGCATGC
CTCATTTTTTTTTCGGCCGCTATAATCAGGGTCCCAAAATGATTCGCAAG
GTCGTCTCGTGAAGTGGATGGAGAAGGACCGCTGCAACCAAGGCACTGGT
GGCATCTCGTTTTTCCAGGAGATTGTAGTTTGTACCTGGTATCCCCTTGC
CGACTACACTGGTACACGATTGTGGCGACAAACAACTTGGAGTTAAAGAA
GGATCACGTTTGCAGCACATCAGCAGTAAAAACAGTTATTAAAGACGTCT
TCCCTGTCCCCCAATCTCAAAGAATCGTTGCCGCCCGCCCTTGGGTCTGT
CGAAGGTTATCACTTATATCCGCATTCGCCACCTCCCATGTCCCTAACCC
TTCCCCCCCGGCCCCTTACTTCGCGTCCCCGTTCGACTCTTTCGGAACCC
TTCCTTTTGTTCTGCGTTTGGTGTCAAGACGCCACCTATTGCGGACACCG
AGACGGTGGAGATGCCCGTCCCGATTTTCCCCACGTGCATCGACGCCTGC
GGTTGCATGGTTGCTGTCGGCACGCGGGAAGGTCCCGTTATTTTGTTTGA
CGTCGGCACCGCCCGCGGGCACGAACGCGCGGCGGCTTCTAAAGGACCGC
GAGGCGGAGAGACCGGGCCTTTGGCAGCCAGGTCTACTGCGCGCAGCAGT
AGCAGCAGTAGCAACAGCAGAAACAATAGCAGTAGCATTGGTGGCAACAG
CATGAGCAATACTAGAGGCAGGGTCAATGGCGAAAGCAGCAAAGGCAATA
CAACTAGAACCAGCAGTGGCGTGAGCAACAGAAGCAGCAGCAGCAGCATG
GCCAACAACAGCAACAGCAGCAGCAGTAACGGCGTCAAAACTCAATCGGG
TTTCTTACCCTCGGAGGCTCTACGGGCGTCCGAACAGAAGGGCAGTAGCG
ACGGTACCCGCGGTGGAAGCGGCGGCGACGGCGACGGTACGACGACGACT
GCGATAAGCGTGTACGGTTCCCTTGCAGACGGGGCGGGGCCTATCTCCGC
CGTCTTGCTCGACAGAGCCAAGGTTATTGCCGCGGGATGCGGCTCGCGGA
GAAGTGGAGGCGGGTACGTCATCAGGTGCGCCAGTGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig9918:7786..10723+

>mRNA_M-pyrifera_M_contig9918.22817.1 ID=mRNA_M-pyrifera_M_contig9918.22817.1|Name=mRNA_M-pyrifera_M_contig9918.22817.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1986bp|location=Sequence derived from alignment at M-pyrifera_M_contig9918:7786..10723+ (Macrocystis pyrifera P11B4 male)
ATGGGGCCTGACGAGTATCGAGCTGGCAGCCTTCCTCTCCACGTCATGGT
TACCGTGCTGCAGTTTGCGGTCCCTGAAATCATGTTGCCGGGATGGGGCC
TGACGAGTATCGAGCTGGCAGCCTTCCTCTCCACGTCATGGTTACCGTGC
TGCAGTTTGCGGTCCCTGAAATCATGTTGCCGGGCGAGGCCCGACTCGTC
TGCAGGGGTACAGCCTCGGCTCTCGGCTCCCCTTCCTTCTGGCGCGGCAT
GACCATCATCCTCGACCGAGATGAGGGAGACCCTGAACCCAAACCCAAAC
CCAAACCGGAGCCCGAGCCCAAGCCCGAACTCCGCTTTCAACACGCCTCT
GGAACGGATGCACCCGCCAAGCCCGAACCCCACTTTCAACATGCCTCTGA
AACAAATACACCCGCCAAACCCGAACCCCTGGCTCAACACGCCTCCGATA
CGACGAGAAGTTCCCCGCCGCCCACGAGGCCCGACTCGTCTGCAGGGGTA
CAGCCTCGGCTCTCGGCTCCCCTTCCTTCTGGCGCGGCATGACCATCATC
CTCGACCGAGATGAGGGAGACCCTGAACCCAAACCCAAACCCAAACCGGA
GCCCGAGCCCAAGCCCGAACTCCGCTTTCAACACGCCTCTGGAACGGATG
CACCCGCCAAGCCCGAACCCCACTTTCAACATGCCTCTGAAACAAATACA
CCCGCCAAACCCGAACCCCTGGCTCAACACGCCTCCGATACGACGAGAAG
TTCCCCGCCGCCCATGGCTGTCGGGGGCGGTGCCGCCGACGGTGACACCC
CGGGAAGTTTGAGAGGAGGGACGACGGTGGGGGGTGGGCGAGAGGAGGCG
GAGTGTGCGAGGCGGTTCCTTCGGCGGTACCACCACCACGTCGCGTTTCG
GCGGCTGTGGCTGTCGGGGGCGGTGCCGCCGACGGTGACACCCCGGGAAG
TTTGAGAGGAGGGACGACGGTGGGGGGTGGGCGAGAGGAGGCGGAGTGTG
CGAGGCGGTTCCTTCGGCGGTACCACCACCACGTCGCGTTTCGGCGGCTG
ACGCCACCTATTGCGGACACCGAGACGGTGGAGATGCCCGTCCCGATTTT
CCCCACGTGCATCGACGCCTGCGGTTGCATGGTTGCTGTCGGCACGCGGG
AAGGTCCCGTTATTTTGTTTGACGTCGGCACCGCCCGCGGGCACGAACGC
GCGGCGGCTTCTAAAGGACCGCGAGGCGGAGAGACCGGGCCTTTGGCAGC
CAGACGCCACCTATTGCGGACACCGAGACGGTGGAGATGCCCGTCCCGAT
TTTCCCCACGTGCATCGACGCCTGCGGTTGCATGGTTGCTGTCGGCACGC
GGGAAGGTCCCGTTATTTTGTTTGACGTCGGCACCGCCCGCGGGCACGAA
CGCGCGGCGGCTTCTAAAGGACCGCGAGGCGGAGAGACCGGGCCTTTGGC
AGCCAGCAGTAACGGCGTCAAAACTCAATCGGGTTTCTTACCCTCGGAGG
CTCTACGGGCGTCCGAACAGAAGGGCAGTAGCGACGGTACCCGCGGTGGA
AGCGGCGGCGACGGCGACGGTACGACGACGACTGCGATAAGCGTGTACGG
TTCCCTTGCAGACGGGGCGGGGCCTATCTCCGCCGTCTTGCTCGACAGAG
CCAAGGTTATTGCCGCGGGATGCGGCTCGCGGAGAAGTGGAGGCGGGTAC
GTCATCAGGTGCGCCAGTGTACAGTAACGGCGTCAAAACTCAATCGGGTT
TCTTACCCTCGGAGGCTCTACGGGCGTCCGAACAGAAGGGCAGTAGCGAC
GGTACCCGCGGTGGAAGCGGCGGCGACGGCGACGGTACGACGACGACTGC
GATAAGCGTGTACGGTTCCCTTGCAGACGGGGCGGGGCCTATCTCCGCCG
TCTTGCTCGACAGAGCCAAGGTTATTGCCGCGGGATGCGGCTCGCGGAGA
AGTGGAGGCGGGTACGTCATCAGGTGCGCCAGTGTA
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