mRNA_M-pyrifera_M_contig110818.2279.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110818.2279.1
Unique NamemRNA_M-pyrifera_M_contig110818.2279.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A7X6AP43_9ACTN (AMP-binding protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AP43_9ACTN)

HSP 1 Score: 244 bits (622), Expect = 2.350e-76
Identity = 121/142 (85.21%), Postives = 128/142 (90.14%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREKY 426
            KGYTD SLEAEAFD+QGRFRTGDLG+ R DGHV LTGRVKDIIIRKGENISA+EVEDVLY LPQV NAAVIGLPD  RGE VCAVIETA GQ DLTF++MV AC DAGLMRQKTPE+LEIHDGPLPRNATMKILKYELR+ Y
Sbjct:  351 KGYTDPSLEAEAFDDQGRFRTGDLGVQREDGHVTLTGRVKDIIIRKGENISAKEVEDVLYTLPQVENAAVIGLPDPARGERVCAVIETAAGQADLTFEEMVKACEDAGLMRQKTPEQLEIHDGPLPRNATMKILKYELRDLY 492          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A381R426_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381R426_9ZZZZ)

HSP 1 Score: 219 bits (558), Expect = 3.010e-70
Identity = 106/140 (75.71%), Postives = 121/140 (86.43%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELRE 420
            KGY D +L+AEAFDE GRFR+GDL +MR DGHV LTGRVKDIIIRKGENI+A+E+EDVLYA P+V   AVIGLPD DRGE VCAV+ETAEG   LT+D+MVAAC DA LMRQK PE+L +HDGPLPRNATMKILKYEL++
Sbjct:   67 KGYRDPTLDAEAFDEAGRFRSGDLAVMRGDGHVTLTGRVKDIIIRKGENIAAKEIEDVLYAHPKVEAVAVIGLPDPDRGERVCAVVETAEGAEPLTYDEMVAACTDATLMRQKVPEQLVVHDGPLPRNATMKILKYELKD 206          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A7K1ZCC2_9ACTN (Cyclohexanecarboxylate-CoA ligase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZCC2_9ACTN)

HSP 1 Score: 228 bits (580), Expect = 9.830e-70
Identity = 112/141 (79.43%), Postives = 124/141 (87.94%), Query Frame = 1
Query:    4 GYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREKY 426
            GYTD  L AEAFD+QGRF TGDLG+  ADGHV LTGRVKDIIIRKGENISA+EVEDVLY+LP V NAAVIGLPD +RGE VCAVIETA G  DLTF++M AAC D+GLM QKTPE+LEI+DGPLPRNATMKILKYELR++Y
Sbjct:  370 GYTDPDLNAEAFDDQGRFCTGDLGVKHADGHVTLTGRVKDIIIRKGENISAKEVEDVLYSLPSVENAAVIGLPDPERGERVCAVIETAAGHSDLTFEEMSAACRDSGLMLQKTPEQLEIYDGPLPRNATMKILKYELRDQY 510          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A2E2F4D6_9RHOB (Cyclohexanecarboxylate-CoA ligase n=1 Tax=Nioella sp. TaxID=1912091 RepID=A0A2E2F4D6_9RHOB)

HSP 1 Score: 219 bits (558), Expect = 1.000e-67
Identity = 106/140 (75.71%), Postives = 121/140 (86.43%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELRE 420
            KGY D +L+AEAFDE GRFR+GDL +MR DGHV LTGRVKDIIIRKGENI+A+E+EDVLYA P+V   AVIGLPD DRGE VCAV+ETAEG   LT+D+MVAAC DA LMRQK PE+L +HDGPLPRNATMKILKYEL++
Sbjct:  264 KGYRDPTLDAEAFDEAGRFRSGDLAVMRGDGHVTLTGRVKDIIIRKGENIAAKEIEDVLYAHPKVEAVAVIGLPDPDRGERVCAVVETAEGAEPLTYDEMVAACTDATLMRQKVPEQLVVHDGPLPRNATMKILKYELKD 403          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A3M2FVN0_ACTSX (Cyclohexanecarboxylate-CoA ligase n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2FVN0_ACTSX)

HSP 1 Score: 220 bits (561), Expect = 4.300e-67
Identity = 106/142 (74.65%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREKY 426
            KGYTD  L A AFDE+GRFRTGDL +MR DGH+ LTGRVKDIIIRKGENISA+E+EDVL+ALPQV   AVIGLPD +RGE VCAV+ETAEG   LTFD+MV AC +AGLMRQK PE+L +HDGPLPRNAT KILK+ LR++Y
Sbjct:  368 KGYTDPDLTAAAFDEEGRFRTGDLAIMRPDGHITLTGRVKDIIIRKGENISAKEIEDVLFALPQVGAVAVIGLPDPERGERVCAVVETAEGAEPLTFDEMVRACEEAGLMRQKIPEQLIVHDGPLPRNATFKILKHVLRDRY 509          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A2E8L8Z1_9ACTN (Cyclohexanecarboxylate-CoA ligase n=8 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L8Z1_9ACTN)

HSP 1 Score: 219 bits (557), Expect = 1.890e-66
Identity = 109/142 (76.76%), Postives = 120/142 (84.51%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREKY 426
            KGYTD SLEA AFDEQGRFRTGDLG+M  DGHV LTGR+KDIIIRKGENISA E+E+VLY LPQV NAAVIGLPD DRGE VCAV+ETA  QPDLTFD++V AC  AGLM QK PE+L I    LPRNATMKILK+ELR++Y
Sbjct:  373 KGYTDPSLEAGAFDEQGRFRTGDLGVMHDDGHVTLTGRLKDIIIRKGENISAAEIENVLYELPQVGNAAVIGLPDPDRGERVCAVVETAPDQPDLTFDELVTACKAAGLMTQKIPEQLVIRGEALPRNATMKILKFELRDQY 514          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A2E5P223_9ACTN (Cyclohexanecarboxylate-CoA ligase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5P223_9ACTN)

HSP 1 Score: 216 bits (551), Expect = 1.580e-65
Identity = 105/140 (75.00%), Postives = 120/140 (85.71%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELRE 420
            KGY D +L+AEAFDE GRFR+GDL +MR DGHV LTGRVKDIIIRKGENI+A+E+EDVLYA P+V   AVIGLPD +RGE VCAV+ETAEG   LT+D+MV  CADA LMRQK PE+L IHDGPLPRNATMKILKYEL++
Sbjct:  374 KGYRDPTLDAEAFDEMGRFRSGDLAVMREDGHVTLTGRVKDIIIRKGENIAAKEIEDVLYAHPKVEAVAVIGLPDLNRGERVCAVVETAEGAEPLTYDEMVTVCADAALMRQKVPEQLVIHDGPLPRNATMKILKYELKD 513          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A2E5ZGV8_9ACTN (Cyclohexanecarboxylate-CoA ligase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5ZGV8_9ACTN)

HSP 1 Score: 215 bits (547), Expect = 7.370e-65
Identity = 103/141 (73.05%), Postives = 121/141 (85.82%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREK 423
            KGY D SL AEAFD+QGRFR+GDL +MR DGHV LTGR+KD+IIRKGENI+A+E+EDVLYA P V+  AVIGLPD DRGE VCAV+ETAEG   L FD+MVAAC +AGLMRQK PE+L  +DGPLPRNAT+KILKYEL+++
Sbjct:  384 KGYRDESLNAEAFDDQGRFRSGDLAVMRDDGHVTLTGRLKDVIIRKGENIAAKEIEDVLYAHPSVSAVAVIGLPDADRGERVCAVVETAEGAEPLAFDEMVAACTEAGLMRQKVPEQLVAYDGPLPRNATLKILKYELKDE 524          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A2E6UL87_9ACTN (Cyclohexanecarboxylate-CoA ligase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E6UL87_9ACTN)

HSP 1 Score: 214 bits (546), Expect = 7.820e-65
Identity = 103/141 (73.05%), Postives = 122/141 (86.52%), Query Frame = 1
Query:    1 KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREK 423
            KGY DASL+AEAFDE+GRFR+GDLG+M ADGHV LTGRVKDIIIRKGEN+SA+EVEDVL+A P V   AV+GLPD++RGE VCAV+ET EG   L+F++MV AC  AGLMRQK PE+L + DGPLPRNAT+KILKYELR++
Sbjct:  371 KGYRDASLDAEAFDERGRFRSGDLGVMHADGHVTLTGRVKDIIIRKGENVSAKEVEDVLFAHPSVNAVAVVGLPDRERGERVCAVVETTEGATPLSFEEMVGACEKAGLMRQKVPEQLVVWDGPLPRNATLKILKYELRDE 511          
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Match: A0A6B1EJ94_9ACTN (AMP-binding protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EJ94_9ACTN)

HSP 1 Score: 213 bits (541), Expect = 7.060e-64
Identity = 104/141 (73.76%), Postives = 121/141 (85.82%), Query Frame = 1
Query:    4 GYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENISAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDMVAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREKY 426
            GYTD+SL+ +AFD +GRFRTGDLG++R DGH+ LTGRVKDIIIRKGENISA+E+EDVLYA  +VA AAVIGL D +RGE VCAV+ETA G  DLTFD+MV AC DAGL RQK PE+LEIH  PLPRNAT+KILK++LRE Y
Sbjct:  380 GYTDSSLDEQAFDTRGRFRTGDLGVLRPDGHLILTGRVKDIIIRKGENISAKEIEDVLYAHDKVAAAAVIGLSDPERGERVCAVVETAPGSEDLTFDEMVEACVDAGLARQKVPEQLEIHPAPLPRNATLKILKHKLREIY 520          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110818.2279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6AP43_9ACTN2.350e-7685.21AMP-binding protein n=1 Tax=Actinomycetia bacteriu... [more]
A0A381R426_9ZZZZ3.010e-7075.71Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7K1ZCC2_9ACTN9.830e-7079.43Cyclohexanecarboxylate-CoA ligase n=2 Tax=Acidimic... [more]
A0A2E2F4D6_9RHOB1.000e-6775.71Cyclohexanecarboxylate-CoA ligase n=1 Tax=Nioella ... [more]
A0A3M2FVN0_ACTSX4.300e-6774.65Cyclohexanecarboxylate-CoA ligase n=1 Tax=Actinomy... [more]
A0A2E8L8Z1_9ACTN1.890e-6676.76Cyclohexanecarboxylate-CoA ligase n=8 Tax=Acidimic... [more]
A0A2E5P223_9ACTN1.580e-6575.00Cyclohexanecarboxylate-CoA ligase n=1 Tax=Acidimic... [more]
A0A2E5ZGV8_9ACTN7.370e-6573.05Cyclohexanecarboxylate-CoA ligase n=2 Tax=Acidimic... [more]
A0A2E6UL87_9ACTN7.820e-6573.05Cyclohexanecarboxylate-CoA ligase n=1 Tax=Acidimic... [more]
A0A6B1EJ94_9ACTN7.060e-6473.76AMP-binding protein n=2 Tax=Acidimicrobiaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110818contigM-pyrifera_M_contig110818:3..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score186.8
Seed ortholog evalue7.1e-45
Seed eggNOG ortholog298654.FraEuI1c_1887
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Acyl-CoA synthetase (AMP-forming) AMP-acid ligase II
EggNOG OGs2GMVB@201174,4ESDV@85013,COG0318@1,COG0318@2
COG Functional cat.IQ
Best tax levelFrankiales
Best eggNOG OGNA|NA|NA
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.36269-CDS-M-pyrifera_M_contig110818:2..4341622815620.36269-CDS-M-pyrifera_M_contig110818:2..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110818 3..434 +
1692277490.8902068-CDS-M-pyrifera_M_contig110818:2..4341692277490.8902068-CDS-M-pyrifera_M_contig110818:2..434Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110818 3..434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110818.2279.1prot_M-pyrifera_M_contig110818.2279.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110818 3..434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110818.2279.1

>prot_M-pyrifera_M_contig110818.2279.1 ID=prot_M-pyrifera_M_contig110818.2279.1|Name=mRNA_M-pyrifera_M_contig110818.2279.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=144bp
KGYTDASLEAEAFDEQGRFRTGDLGLMRADGHVALTGRVKDIIIRKGENI
SAQEVEDVLYALPQVANAAVIGLPDKDRGEMVCAVIETAEGQPDLTFDDM
VAACADAGLMRQKTPERLEIHDGPLPRNATMKILKYELREKYT*
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mRNA from alignment at M-pyrifera_M_contig110818:3..434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110818.2279.1 ID=mRNA_M-pyrifera_M_contig110818.2279.1|Name=mRNA_M-pyrifera_M_contig110818.2279.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig110818:3..434+ (Macrocystis pyrifera P11B4 male)
AAGGGCTACACCGACGCGTCGCTCGAGGCGGAGGCCTTCGACGAGCAGGG GCGGTTCAGGACCGGCGATCTGGGTCTGATGCGGGCCGACGGCCATGTGG CGCTGACCGGCCGGGTCAAGGACATCATCATTCGCAAGGGCGAGAACATC TCGGCCCAGGAGGTCGAGGATGTGCTCTACGCCCTTCCCCAGGTCGCCAA CGCCGCGGTGATCGGTCTGCCCGACAAGGACCGGGGCGAGATGGTGTGCG CCGTGATCGAAACGGCCGAGGGGCAACCGGATCTGACCTTCGACGACATG GTCGCCGCGTGCGCCGATGCGGGCCTCATGCGACAGAAGACGCCGGAGCG GCTGGAGATCCACGATGGACCGCTGCCCCGCAATGCCACTATGAAGATCC TCAAGTACGAACTCAGGGAGAAGTACACGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110818:3..434+

>mRNA_M-pyrifera_M_contig110818.2279.1 ID=mRNA_M-pyrifera_M_contig110818.2279.1|Name=mRNA_M-pyrifera_M_contig110818.2279.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=864bp|location=Sequence derived from alignment at M-pyrifera_M_contig110818:3..434+ (Macrocystis pyrifera P11B4 male)
AAGGGCTACACCGACGCGTCGCTCGAGGCGGAGGCCTTCGACGAGCAGGG
GCGGTTCAGGACCGGCGATCTGGGTCTGATGCGGGCCGACGGCCATGTGG
CGCTGACCGGCCGGGTCAAGGACATCATCATTCGCAAGGGCGAGAACATC
TCGGCCCAGGAGGTCGAGGATGTGCTCTACGCCCTTCCCCAGGTCGCCAA
CGCCGCGGTGATCGGTCTGCCCGACAAGGACCGGGGCGAGATGGTGTGCG
CCGTGATCGAAACGGCCGAGGGGCAACCGGATCTGACCTTCGACGACATG
GTCGCCGCGTGCGCCGATGCGGGCCTCATGCGACAGAAGACGCCGGAGCG
GCTGGAGATCCACGATGGACCGCTGCCCCGCAATGCCACTATGAAGATCC
TCAAGTACGAACTCAGGGAGAAGTACACGTGAAAGGGCTACACCGACGCG
TCGCTCGAGGCGGAGGCCTTCGACGAGCAGGGGCGGTTCAGGACCGGCGA
TCTGGGTCTGATGCGGGCCGACGGCCATGTGGCGCTGACCGGCCGGGTCA
AGGACATCATCATTCGCAAGGGCGAGAACATCTCGGCCCAGGAGGTCGAG
GATGTGCTCTACGCCCTTCCCCAGGTCGCCAACGCCGCGGTGATCGGTCT
GCCCGACAAGGACCGGGGCGAGATGGTGTGCGCCGTGATCGAAACGGCCG
AGGGGCAACCGGATCTGACCTTCGACGACATGGTCGCCGCGTGCGCCGAT
GCGGGCCTCATGCGACAGAAGACGCCGGAGCGGCTGGAGATCCACGATGG
ACCGCTGCCCCGCAATGCCACTATGAAGATCCTCAAGTACGAACTCAGGG
AGAAGTACACGTGA
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