mRNA_M-pyrifera_M_contig110801.2275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110801.2275.1
Unique NamemRNA_M-pyrifera_M_contig110801.2275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig110801.2275.1 vs. uniprot
Match: A0A5A8E5Z3_CAFRO (RECA_2 domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5Z3_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 1.880e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 LGPTWAHEVDHRIVLHFAPGGDVRIARLVKSATRPEGAAAFAITAGGVRRP 153
            LG +WAH   +R+ L++   G VR+ARL KS +RP GAAAFA+T+ GVRRP
Sbjct:  280 LGDSWAHACTNRLFLYWF--GKVRVARLAKSPSRPLGAAAFAVTSEGVRRP 328
[Close]
BLAST of mRNA_M-pyrifera_M_contig110801.2275.1 vs. uniprot
Match: A0A5A8E3R9_CAFRO (RECA_2 domain-containing protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E3R9_CAFRO)

HSP 1 Score: 55.8 bits (133), Expect = 1.970e-7
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 LGPTWAHEVDHRIVLHFAPGGDVRIARLVKSATRPEGAAAFAITAGGVRRP 153
            LG +WAH   +R+ L++   G VR+ARL KS +RP GAAAFA+T+ GVRRP
Sbjct:  397 LGDSWAHACTNRLFLYWF--GKVRVARLAKSPSRPLGAAAFAVTSEGVRRP 445
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110801.2275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8E5Z3_CAFRO1.880e-756.86RECA_2 domain-containing protein n=1 Tax=Cafeteria... [more]
A0A5A8E3R9_CAFRO1.970e-756.86RECA_2 domain-containing protein n=5 Tax=Cafeteria... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110801contigM-pyrifera_M_contig110801:375..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.1935873-CDS-M-pyrifera_M_contig110801:374..5781622815620.1935873-CDS-M-pyrifera_M_contig110801:374..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110801 375..578 -
1692277490.831994-CDS-M-pyrifera_M_contig110801:374..5781692277490.831994-CDS-M-pyrifera_M_contig110801:374..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110801 375..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110801.2275.1prot_M-pyrifera_M_contig110801.2275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110801 375..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110801.2275.1

>prot_M-pyrifera_M_contig110801.2275.1 ID=prot_M-pyrifera_M_contig110801.2275.1|Name=mRNA_M-pyrifera_M_contig110801.2275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
LGPTWAHEVDHRIVLHFAPGGDVRIARLVKSATRPEGAAAFAITAGGVRR
PTEIAASAAAVAAGGEL*
back to top

mRNA from alignment at M-pyrifera_M_contig110801:375..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110801.2275.1 ID=mRNA_M-pyrifera_M_contig110801.2275.1|Name=mRNA_M-pyrifera_M_contig110801.2275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig110801:375..578- (Macrocystis pyrifera P11B4 male)
TTGGGTCCAACTTGGGCTCACGAAGTGGACCATCGGATTGTCCTGCATTT
TGCACCTGGTGGAGATGTTCGAATTGCACGACTTGTCAAGTCAGCGACCC
GTCCAGAAGGAGCTGCTGCGTTTGCTATCACCGCTGGTGGCGTTCGTAGA
CCGACAGAAATTGCCGCATCAGCTGCAGCAGTTGCAGCGGGTGGTGAATT
GTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig110801:375..578-

>mRNA_M-pyrifera_M_contig110801.2275.1 ID=mRNA_M-pyrifera_M_contig110801.2275.1|Name=mRNA_M-pyrifera_M_contig110801.2275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig110801:375..578- (Macrocystis pyrifera P11B4 male)
TTGGGTCCAACTTGGGCTCACGAAGTGGACCATCGGATTGTCCTGCATTT
TGCACCTGGTGGAGATGTTCGAATTGCACGACTTGTCAAGTCAGCGACCC
GTCCAGAAGGAGCTGCTGCGTTTGCTATCACCGCTGGTGGCGTTCGTAGA
CCGACAGAAATTGCCGCATCAGCTGCAGCAGTTGCAGCGGGTGGTGAATT
GTGATTGGGTCCAACTTGGGCTCACGAAGTGGACCATCGGATTGTCCTGC
ATTTTGCACCTGGTGGAGATGTTCGAATTGCACGACTTGTCAAGTCAGCG
ACCCGTCCAGAAGGAGCTGCTGCGTTTGCTATCACCGCTGGTGGCGTTCG
TAGACCGACAGAAATTGCCGCATCAGCTGCAGCAGTTGCAGCGGGTGGTG
AATTGTGA
back to top