mRNA_M-pyrifera_M_contig11079.2269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11079.2269.1
Unique NamemRNA_M-pyrifera_M_contig11079.2269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11079.2269.1 vs. uniprot
Match: A0A6H5KUL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.220e-26
Identity = 80/173 (46.24%), Postives = 92/173 (53.18%), Query Frame = 1 
Query:    4 EGVALLPRMRRAGVRPDIKSFAASLACLRAGGKWERAVELLDEM---------------ESGKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXLRILQRRGAAGAAAW---AVEQSSVAGWDAERLAAEATGHAAKTSLSNA-GPNLVCYNAAMAACARAGEWAPALELLKEME 465
            EG ALLPRM   GVRPD+ S+   LACLRAGG+W+RAVE+LDEM               E    G                           LR LQR+G++ A      A  +   AGWDA  LAAEA G  A  S S A GPNLVCYNAA+ ACARA E + ALELL+EME
Sbjct:  620 EGTALLPRMLEVGVRPDVCSYGGHLACLRAGGQWQRAVEVLDEMTKAAAKAGTGIGGTGEEEAAGVSPDLGCYAAVISTLGEAGRWKQALDLLRFLQRKGSSAATCGEEPAAREERAAGWDA--LAAEARGGGAAISSSPAAGPNLVCYNAALTACARAREGSTALELLQEME 790
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BLAST of mRNA_M-pyrifera_M_contig11079.2269.1 vs. uniprot
Match: D8LMP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 4.030e-26
Identity = 80/175 (45.71%), Postives = 94/175 (53.71%), Query Frame = 1 
Query:    1 EEGVALLPRMRRAGVRPDIKSFAASLACLRAGGKWERAVELLDEM---------------ESGKHGXXXXXXXXXXXXXXXXXXXXXXXXXXXLRILQRRGAAGAAAW----AVEQSSVAGWDAERLAAEATGHAAKTSLSNA-GPNLVCYNAAMAACARAGEWAPALELLKEME 465
            +EG ALLPRM   GVRPD+ S+   LACLRAGG+W+RAVE+LDEM               E    G                           LR LQR+G++ AA W    A  +   A WDA  LAAEA G  A  S S A GPNLVCYNAA+ ACARA E + AL+LL+EME
Sbjct:  369 QEGTALLPRMLEVGVRPDVCSYGGHLACLRAGGQWQRAVEVLDEMTKAAAKAGTGIGGSGEEEAAGVSPDLGCYAAVISTLGEAGRWKQALDLLRFLQRKGSS-AATWGEEPAAREEPAAAWDA--LAAEARGGGAAISSSPAAGPNLVCYNAALTACARAKEGSTALDLLEEME 540
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11079.2269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUL4_9PHAE2.220e-2646.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMP8_ECTSI4.030e-2645.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11079contigM-pyrifera_M_contig11079:5683..6147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D8LMP8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size438
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.0016234-UTR-M-pyrifera_M_contig11079:5682..57091622815620.0016234-UTR-M-pyrifera_M_contig11079:5682..5709Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11079 5683..5709 +
1692277490.7407932-UTR-M-pyrifera_M_contig11079:5682..57091692277490.7407932-UTR-M-pyrifera_M_contig11079:5682..5709Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11079 5683..5709 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.0135314-CDS-M-pyrifera_M_contig11079:5709..61471622815620.0135314-CDS-M-pyrifera_M_contig11079:5709..6147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11079 5710..6147 +
1692277490.755002-CDS-M-pyrifera_M_contig11079:5709..61471692277490.755002-CDS-M-pyrifera_M_contig11079:5709..6147Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11079 5710..6147 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11079.2269.1prot_M-pyrifera_M_contig11079.2269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11079 5710..6147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11079.2269.1

>prot_M-pyrifera_M_contig11079.2269.1 ID=prot_M-pyrifera_M_contig11079.2269.1|Name=mRNA_M-pyrifera_M_contig11079.2269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=146bp
MRRAGVRPDIKSFAASLACLRAGGKWERAVELLDEMESGKHGLSPDLGCY
GAVMTTLGEAGQWERALDLLRILQRRGAAGAAAWAVEQSSVAGWDAERLA
AEATGHAAKTSLSNAGPNLVCYNAAMAACARAGEWAPALELLKEME
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mRNA from alignment at M-pyrifera_M_contig11079:5683..6147+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11079.2269.1 ID=mRNA_M-pyrifera_M_contig11079.2269.1|Name=mRNA_M-pyrifera_M_contig11079.2269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig11079:5683..6147+ (Macrocystis pyrifera P11B4 male)
GAAGAAGGGGTGGCGCTCCTACCGCGTATGCGCCGAGCGGGCGTCCGCCC
CGACATCAAAAGCTTCGCGGCGTCCTTGGCATGCCTGCGGGCGGGGGGGA
AGTGGGAACGCGCTGTGGAGCTCCTAGACGAGATGGAGTCGGGTAAGCAT
GGGCTCTCCCCCGACCTCGGGTGCTACGGTGCGGTCATGACTACCCTCGG
GGAGGCTGGGCAGTGGGAGCGCGCCCTCGACCTGTTGCGGATTTTACAGC
GACGAGGGGCCGCCGGGGCGGCTGCGTGGGCGGTGGAGCAGTCGTCGGTG
GCAGGTTGGGACGCGGAGAGGTTGGCGGCGGAGGCCACGGGACACGCCGC
GAAGACGTCGCTGTCGAACGCGGGACCAAACCTGGTGTGCTACAATGCCG
CCATGGCGGCCTGCGCGAGAGCTGGAGAGTGGGCGCCGGCTCTGGAGCTG
CTGAAGGAAATGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11079:5683..6147+

>mRNA_M-pyrifera_M_contig11079.2269.1 ID=mRNA_M-pyrifera_M_contig11079.2269.1|Name=mRNA_M-pyrifera_M_contig11079.2269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=876bp|location=Sequence derived from alignment at M-pyrifera_M_contig11079:5683..6147+ (Macrocystis pyrifera P11B4 male)
ATGCGCCGAGCGGGCGTCCGCCCCGACATCAAAAGCTTCGCGGCGTCCTT
GGCATGCCTGCGGGCGGGGGGGAAGTGGGAACGCGCTGTGGAGCTCCTAG
ACGAGATGGAGTCGGGTAAGCATGGGCTCTCCCCCGACCTCGGGTGCTAC
GGTGCGGTCATGACTACCCTCGGGGAGGCTGGGCAGTGGGAGCGCGCCCT
CGACCTGTTGCGGATTTTACAGCGACGAGGGGCCGCCGGGGCGGCTGCGT
GGGCGGTGGAGCAGTCGTCGGTGGCAGGTTGGGACGCGGAGAGGTTGGCG
GCGGAGGCCACGGGACACGCCGCGAAGACGTCGCTGTCGAACGCGGGACC
AAACCTGGTGTGCTACAATGCCGCCATGGCGGCCTGCGCGAGAGCTGGAG
AGTGGGCGCCGGCTCTGGAGCTGCTGAAGGAAATGGAGATGCGCCGAGCG
GGCGTCCGCCCCGACATCAAAAGCTTCGCGGCGTCCTTGGCATGCCTGCG
GGCGGGGGGGAAGTGGGAACGCGCTGTGGAGCTCCTAGACGAGATGGAGT
CGGGTAAGCATGGGCTCTCCCCCGACCTCGGGTGCTACGGTGCGGTCATG
ACTACCCTCGGGGAGGCTGGGCAGTGGGAGCGCGCCCTCGACCTGTTGCG
GATTTTACAGCGACGAGGGGCCGCCGGGGCGGCTGCGTGGGCGGTGGAGC
AGTCGTCGGTGGCAGGTTGGGACGCGGAGAGGTTGGCGGCGGAGGCCACG
GGACACGCCGCGAAGACGTCGCTGTCGAACGCGGGACCAAACCTGGTGTG
CTACAATGCCGCCATGGCGGCCTGCGCGAGAGCTGGAGAGTGGGCGCCGG
CTCTGGAGCTGCTGAAGGAAATGGAG
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