mRNA_M-pyrifera_M_contig110757.2257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig110757.2257.1
Unique NamemRNA_M-pyrifera_M_contig110757.2257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: V5GIX2_ANOGL (Putative serine protease K12H4.7 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GIX2_ANOGL)

HSP 1 Score: 69.7 bits (169), Expect = 9.160e-14
Identity = 30/47 (63.83%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            AQ++G+LL  LEHRFYGES+PF+   TENL+YLSS+QA+ D+ANF++
Sbjct:  105 AQKYGALLFQLEHRFYGESRPFSDLATENLRYLSSEQAVADSANFIK 151
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: A0A7R9M458_9ACAR (Hypothetical protein (Fragment) n=3 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9M458_9ACAR)

HSP 1 Score: 70.5 bits (171), Expect = 1.060e-13
Identity = 30/47 (63.83%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            A++F + L TLEHR+YGES+PFN+TT ENL+YLSS+QA+ DTA+F++
Sbjct:   86 AKQFDAFLATLEHRYYGESEPFNETTVENLKYLSSEQALADTADFIQ 132
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: V5GQY3_ANOGL (Putative serine protease K12H4.7 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GQY3_ANOGL)

HSP 1 Score: 69.7 bits (169), Expect = 4.880e-13
Identity = 30/47 (63.83%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            AQ++G+LL  LEHRFYGES+PF+   TENL+YLSS+QA+ D+ANF++
Sbjct:  105 AQKYGALLFQLEHRFYGESRPFSDLATENLRYLSSEQAVADSANFIK 151
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: A0A7R9M3I2_9ACAR (Hypothetical protein n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9M3I2_9ACAR)

HSP 1 Score: 68.6 bits (166), Expect = 5.540e-13
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            AQ+F + L TLEHR+YGESQPFN TT E+L+YLS++QA+ DTA F++
Sbjct:   97 AQQFNAFLATLEHRYYGESQPFNDTTVEHLKYLSTEQALADTAAFIQ 143
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: A0A7R9M2G8_9ACAR (Hypothetical protein (Fragment) n=1 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9M2G8_9ACAR)

HSP 1 Score: 69.3 bits (168), Expect = 1.560e-12
Identity = 29/46 (63.04%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFV 144
            A++F + + TLEHR+YGES+PFN+TT ENL+YLSS+QA+ DTA F+
Sbjct:   86 AKQFNAFMATLEHRYYGESEPFNETTVENLKYLSSEQALADTAQFI 131
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: UPI0008747FFC (putative serine protease F56F10.1 n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI0008747FFC)

HSP 1 Score: 68.9 bits (167), Expect = 2.140e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            AQ++G+LL  LEHRFYGESQPF+  +TENL+YLS+ QA+ D ANF++
Sbjct:  104 AQKYGALLFQLEHRFYGESQPFSDLSTENLRYLSTAQALADAANFIK 150
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: V5GUU1_ANOGL (Putative serine protease K12H4.7 n=2 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GUU1_ANOGL)

HSP 1 Score: 68.9 bits (167), Expect = 2.140e-12
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            AQ++G+LL  LEHRFYGESQPF+  +TENL+YLS+ QA+ D ANF++
Sbjct:  104 AQKYGALLFQLEHRFYGESQPFSDLSTENLRYLSTAQALADAANFIK 150
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BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: V7CD80_PHAVU (Uncharacterized protein (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7CD80_PHAVU)

HSP 1 Score: 63.5 bits (153), Expect = 2.630e-12
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANF 141
            A++FG+ L++LEHR+YG+S PFN   TENL+YLSSKQA+ D A F
Sbjct:    3 AKKFGAALVSLEHRYYGKSSPFNSLETENLKYLSSKQALSDLAAF 47
[Close]
BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: A0A7R9M093_9ACAR (Hypothetical protein (Fragment) n=2 Tax=Oppiella nova TaxID=334625 RepID=A0A7R9M093_9ACAR)

HSP 1 Score: 66.6 bits (161), Expect = 2.800e-12
Identity = 28/47 (59.57%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    7 AQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR 147
            A++F + + TLEHR+YGESQPFN T+ E+L+YLSS+QA+ DTA+F++
Sbjct:   90 AKQFNAFMATLEHRYYGESQPFNDTSIEHLKYLSSEQALADTADFIQ 136
[Close]
BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Match: V5GJH1_ANOGL (Putative serine protease F56F10.1 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GJH1_ANOGL)

HSP 1 Score: 67.4 bits (163), Expect = 3.000e-12
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 EYAQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFV 144
            E A+++G+LL  LEHRFYG S PF+  +TENL+YLSS+QA+EDTA F+
Sbjct:  107 EPAEKYGALLFELEHRFYGVSHPFDDLSTENLRYLSSRQALEDTATFI 154
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110757.2257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V5GIX2_ANOGL9.160e-1463.83Putative serine protease K12H4.7 (Fragment) n=1 Ta... [more]
A0A7R9M458_9ACAR1.060e-1363.83Hypothetical protein (Fragment) n=3 Tax=Oppiella n... [more]
V5GQY3_ANOGL4.880e-1363.83Putative serine protease K12H4.7 (Fragment) n=1 Ta... [more]
A0A7R9M3I2_9ACAR5.540e-1363.83Hypothetical protein n=1 Tax=Oppiella nova TaxID=3... [more]
A0A7R9M2G8_9ACAR1.560e-1263.04Hypothetical protein (Fragment) n=1 Tax=Oppiella n... [more]
UPI0008747FFC2.140e-1263.83putative serine protease F56F10.1 n=1 Tax=Anoploph... [more]
V5GUU1_ANOGL2.140e-1263.83Putative serine protease K12H4.7 n=2 Tax=Anoplopho... [more]
V7CD80_PHAVU2.630e-1262.22Uncharacterized protein (Fragment) n=1 Tax=Phaseol... [more]
A0A7R9M093_9ACAR2.800e-1259.57Hypothetical protein (Fragment) n=2 Tax=Oppiella n... [more]
V5GJH1_ANOGL3.000e-1262.50Putative serine protease F56F10.1 (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110757contigM-pyrifera_M_contig110757:136..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue1.6e-09
Seed eggNOG ortholog44689.DDB0237739
KEGG koko:K16603
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004177,GO:0006508,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008239,GO:0009553,GO:0009561,GO:0016787,GO:0019538,GO:0032501,GO:0032502,GO:0043170,GO:0044238,GO:0048229,GO:0048856,GO:0070011,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.Serine carboxypeptidase S28
EggNOG OGs3XGB8@554915,KOG2182@1,KOG2182@2759
COG Functional cat.O
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04812
Exons2
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815619.4000225-CDS-M-pyrifera_M_contig110757:135..1901622815619.4000225-CDS-M-pyrifera_M_contig110757:135..190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110757 136..190 +
1692277490.5096436-CDS-M-pyrifera_M_contig110757:135..1901692277490.5096436-CDS-M-pyrifera_M_contig110757:135..190Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110757 136..190 +
1622815619.4152393-CDS-M-pyrifera_M_contig110757:483..5751622815619.4152393-CDS-M-pyrifera_M_contig110757:483..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110757 484..575 +
1692277490.5204606-CDS-M-pyrifera_M_contig110757:483..5751692277490.5204606-CDS-M-pyrifera_M_contig110757:483..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig110757 484..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110757.2257.1prot_M-pyrifera_M_contig110757.2257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig110757 136..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig110757.2257.1

>prot_M-pyrifera_M_contig110757.2257.1 ID=prot_M-pyrifera_M_contig110757.2257.1|Name=mRNA_M-pyrifera_M_contig110757.2257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
EYAQEFGSLLITLEHRFYGESQPFNQTTTENLQYLSSKQAIEDTANFVR
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mRNA from alignment at M-pyrifera_M_contig110757:136..575+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig110757.2257.1 ID=mRNA_M-pyrifera_M_contig110757.2257.1|Name=mRNA_M-pyrifera_M_contig110757.2257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=440bp|location=Sequence derived from alignment at M-pyrifera_M_contig110757:136..575+ (Macrocystis pyrifera P11B4 male)
GAGTATGCACAGGAGTTTGGCTCTTTGCTCATCACCCTTGAGCACCGTTT
CTATGGTGCATCTCCTTCCATCGCAGCATTGTGAAGCGACCTTGGCCAAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAATGCGAGAGAGAGAGACGAGAGA
GAGAGAGAGATAGAGGAGAGAGGAGAGAGAGAGGTGACGGTATCGAGAGG
GGTACGTGACAGCGAGAGTAAGAGAGGGGAAGGTGTGAGAGTGTGCGGCG
AGCGACGACAGAGAGGGGCGGAGATTGTTTGTTGAGTTGGCACAGACGCC
CGTGAGAGAGGGCAAGAGGCACAGAGCTGACGGGAGGCGCGTGTGTAGGA
GAGAGCCAGCCATTCAACCAAACGACGACGGAGAATCTGCAGTACCTGAG
CTCGAAGCAGGCGATCGAGGACACTGCCAACTTCGTGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig110757:136..575+

>mRNA_M-pyrifera_M_contig110757.2257.1 ID=mRNA_M-pyrifera_M_contig110757.2257.1|Name=mRNA_M-pyrifera_M_contig110757.2257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig110757:136..575+ (Macrocystis pyrifera P11B4 male)
GAGTATGCACAGGAGTTTGGCTCTTTGCTCATCACCCTTGAGCACCGTTT
CTATGGAGTATGCACAGGAGTTTGGCTCTTTGCTCATCACCCTTGAGCAC
CGTTTCTATGGAGAGAGCCAGCCATTCAACCAAACGACGACGGAGAATCT
GCAGTACCTGAGCTCGAAGCAGGCGATCGAGGACACTGCCAACTTCGTGC
GCGAGAGAGCCAGCCATTCAACCAAACGACGACGGAGAATCTGCAGTACC
TGAGCTCGAAGCAGGCGATCGAGGACACTGCCAACTTCGTGCGC
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