prot_M-pyrifera_M_contig110746.2254.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig110746.2254.1
Unique Nameprot_M-pyrifera_M_contig110746.2254.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length121
Homology
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BLAST of mRNA_M-pyrifera_M_contig110746.2254.1 vs. uniprot
Match: A0A2R5G3D4_9STRA (Leucine-rich repeat-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3D4_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.080e-8
Identity = 24/51 (47.06%), Postives = 40/51 (78.43%), Query Frame = 0 
Query:    1 MTNLREIFLRRNKVSSLPRELSRLKQLECVYLEDNQLTDDGIPSSLTALQA 51
            +  L E++LR+NKVS+LP ++ +LK+L+ +YLEDN++T+ G P+S  +L A
Sbjct:   68 LVKLTELYLRKNKVSALPEDIGQLKELDTIYLEDNEMTEAGFPASFGSLSA 118
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BLAST of mRNA_M-pyrifera_M_contig110746.2254.1 vs. uniprot
Match: A0A8C4RSR5_ERPCA (Proline and arginine rich end leucine rich repeat protein n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4RSR5_ERPCA)

HSP 1 Score: 50.4 bits (119), Expect = 9.690e-5
Identity = 26/84 (30.95%), Postives = 50/84 (59.52%), Query Frame = 0 
Query:    3 NLREIFLRRNKVSSLPRELSR-LKQLECVYLEDNQLTDDGIPSSLTALQAMTGITLQRNRLTRVPDPILFWRQLEELHVDGNNI 85
            N+ ++FL RN +  +P +  + L +L  + L +N LTD G+P ++  + ++  + L  N+L  VP   +F  +LE L+++ N+I
Sbjct:  232 NINQLFLDRNNIEDIPSDYFKSLSKLAFLRLNNNLLTDKGVPKNIFNISSLLDLHLAHNKLHNVP---IFSHKLEHLYINHNSI 312
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig110746.2254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2R5G3D4_9STRA9.080e-847.06Leucine-rich repeat-containing protein 1 n=1 Tax=H... [more]
A0A8C4RSR5_ERPCA9.690e-530.95Proline and arginine rich end leucine rich repeat ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 95..118
e-value: 0.014
score: 24.6
coord: 49..73
e-value: 100.0
score: 5.1
coord: 1..24
e-value: 0.21
score: 20.6
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 95..114
e-value: 13.0
score: 12.8
coord: 74..91
e-value: 41.0
score: 9.0
coord: 43..68
e-value: 84.0
score: 6.7
NoneNo IPR availablePANTHERPTHR16083:SF18coord: 1..119
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 1..119
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..119
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..121
e-value: 6.2E-27
score: 95.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 55..108
e-value: 1.9E-8
score: 34.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig110746contigM-pyrifera_M_contig110746:230..592 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig110746.2254.1mRNA_M-pyrifera_M_contig110746.2254.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig110746 221..592 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig110746.2254.1 ID=prot_M-pyrifera_M_contig110746.2254.1|Name=mRNA_M-pyrifera_M_contig110746.2254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MTNLREIFLRRNKVSSLPRELSRLKQLECVYLEDNQLTDDGIPSSLTALQ
AMTGITLQRNRLTRVPDPILFWRQLEELHVDGNNIELLPDAVCDLVQLRE
LGISNNRIRRLPRELGRLVDL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt